Rmu_sc0022816.1_g000001

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022816.1
OG0000255
Physical Location & Seq
Forward (+)
1329 .. 2691
1363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022816.1_g000001.1.cds

Sequence Viewer

Length: 747 bp
atgcaggaggcatacaactacccagaccaactttccataaaaattaggtggcggaggtggcgcgggggggttaggcagaggagatcacatccacagctcaaccgcaacccgaacccgcttccgccgaacccttcatcaattccatggtcgcctatttcaacaacctcaacaagccaacttgaaacccccgacctctcctccgaaaacctttgcctcgatctcttcttccatgtcgtaccgaacattccagcatcctatctccaccagcagctccctcttgcttgggcccatgatgccttaaccaccctcaagctcatctgcaacctccgcggcgtgcacagcactggaaagcccgacaaagaaggattctacacggcgttgcggttaagtaactgcgcctgtcggttagtggccaaatttaggctcggtgcaggtggactttggtccacagaagactcatcgatcatacactttcccaaggagagcaccaacctcatcacaaggttcttttctatgcctttcggaaaaagacttcttgcctttcgggtaagggctttggttgtgatctctttgcgtcaccgaatcgatactcaacgttggcgttacccttgctttgttggtagtatcggtggcattagcactgatagtcggctcttggagagactaggactggaagtacggttgccgggtttcaacaaggttgaaggtttgctccggggaggcttgataatccgagggattgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

248

Amino Acids

28.14

Weight (kDa)

10.31

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 422
AccII CGCG 2 cut(s) 63, 330
AciI CCGC 8 cut(s) 52, 63, 103, 116, 122, 328, 330, 382
AclI AACGTT 1 cut(s) 595
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 1 cut(s) 416
AfaI GTAC 2 cut(s) 237, 678
AfiI CCNNNNNNNGG 1 cut(s) 420
AgsI TTSAA 4 cut(s) 159, 182, 694, 704
AluBI AGCT 3 cut(s) 97, 271, 313
AluI AGCT 3 cut(s) 97, 271, 313
Alw21I GWGCWC 2 cut(s) 339, 488
Alw26I GTCTC 1 cut(s) 655
Alw44I GTGCAC 1 cut(s) 335
AoxI GGCC 2 cut(s) 285, 411
ApaI GGGCCC 1 cut(s) 289
ApaLI GTGCAC 1 cut(s) 335
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 416
AspLEI GCGC 2 cut(s) 63, 398
AspS9I GGNCC 3 cut(s) 285, 286, 444
AsuC2I CCSGG 2 cut(s) 687, 716
AsuHPI GGTGA 1 cut(s) 569
AvaII GGWCC 1 cut(s) 444
BaeGI GKGCMC 2 cut(s) 289, 339
BalI TGGCCA 1 cut(s) 413
BanII GRGCYC 1 cut(s) 289
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 2 cut(s) 339, 488
BbvI GCAGC 1 cut(s) 280
BceAI ACGGC 1 cut(s) 390
BcnI CCSGG 2 cut(s) 687, 716
BcoDI GTCTC 1 cut(s) 655
BfaI CTAG 1 cut(s) 665
BfuAI ACCTGC 1 cut(s) 422
BisI GCNGC 2 cut(s) 269, 331
BlsI GCNGC 2 cut(s) 270, 332
Bme1390I CCNGG 2 cut(s) 687, 716
Bme18I GGWCC 1 cut(s) 444
BmgT120I GGNCC 3 cut(s) 285, 286, 444
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 2 cut(s) 687, 716
BmsI GCATC 2 cut(s) 260, 283
BoxI GACNNNNGTC 1 cut(s) 442
BpiI GAAGAC 1 cut(s) 459
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 2 cut(s) 687, 716
Bsa29I ATCGAT 2 cut(s) 461, 585
BsaJI CCNNGG 5 cut(s) 143, 328, 477, 715, 733
BsaXI ACNNNNNCTCC 2 cut(s) 182, 212
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse1I ACTGG 2 cut(s) 349, 675
BseCI ATCGAT 2 cut(s) 461, 585
BseDI CCNNGG 5 cut(s) 143, 328, 477, 715, 733
BseGI GGATG 2 cut(s) 88, 251
BseLI CCNNNNNNNGG 1 cut(s) 420
BseNI ACTGG 2 cut(s) 349, 675
BseRI GAGGAG 2 cut(s) 94, 187
BseSI GKGCMC 2 cut(s) 289, 339
BseXI GCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 2 cut(s) 63, 330
BshFI GGCC 2 cut(s) 287, 413
BshVI ATCGAT 2 cut(s) 461, 585
BsiHKAI GWGCWC 2 cut(s) 339, 488
BsiSI CCGG 2 cut(s) 686, 715
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 1 cut(s) 655
BsnI GGCC 2 cut(s) 287, 413
Bsp120I GGGCCC 1 cut(s) 285
Bsp1286I GDGCHC 3 cut(s) 289, 339, 488
Bsp143I GATC 4 cut(s) 83, 217, 462, 564
Bsp19I CCATGG 1 cut(s) 143
BspACI CCGC 8 cut(s) 52, 63, 103, 116, 122, 328, 330, 382
BspANI GGCC 2 cut(s) 287, 413
BspDI ATCGAT 2 cut(s) 461, 585
BspFNI CGCG 2 cut(s) 63, 330
BspLI GGNNCC 1 cut(s) 287
BspMI ACCTGC 1 cut(s) 422
BsrI ACTGG 2 cut(s) 349, 675
BssECI CCNNGG 5 cut(s) 143, 328, 477, 715, 733
BssMI GATC 4 cut(s) 83, 217, 462, 564
BssT1I CCWWGG 2 cut(s) 143, 477
Bst4CI ACNGT 1 cut(s) 681
Bst6I CTCTTC 1 cut(s) 227
BstC8I GCNNGC 1 cut(s) 335
BstDSI CCRYGG 2 cut(s) 143, 328
BstF5I GGATG 2 cut(s) 88, 251
BstFNI CGCG 2 cut(s) 63, 330
BstHHI GCGC 2 cut(s) 63, 398
BstKTI GATC 4 cut(s) 86, 220, 465, 567
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 4 cut(s) 83, 217, 462, 564
BstMWI GCNNNNNNNGC 4 cut(s) 58, 293, 327, 339
BstPAI GACNNNNGTC 1 cut(s) 442
BstSCI CCNGG 2 cut(s) 685, 714
BstSLI GKGCMC 2 cut(s) 289, 339
BstUI CGCG 2 cut(s) 63, 330
BstV1I GCAGC 1 cut(s) 280
BstV2I GAAGAC 1 cut(s) 459
Bsu15I ATCGAT 2 cut(s) 461, 585
BsuRI GGCC 2 cut(s) 287, 413
BsuTUI ATCGAT 2 cut(s) 461, 585
BtgI CCRYGG 2 cut(s) 143, 328
BtsCI GGATG 2 cut(s) 88, 251
BtsIMutI CAGTG 2 cut(s) 342, 639
BveI ACCTGC 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 335
CfoI GCGC 2 cut(s) 63, 398
Cfr13I GGNCC 3 cut(s) 285, 286, 444
Cfr42I CCGCGG 1 cut(s) 331
ClaI ATCGAT 2 cut(s) 461, 585
CseI GACGC 1 cut(s) 563
Csp6I GTAC 2 cut(s) 236, 677
CviAII CATG 3 cut(s) 144, 230, 290
CviQI GTAC 2 cut(s) 236, 677
DpnI GATC 4 cut(s) 85, 219, 464, 566
DpnII GATC 4 cut(s) 83, 217, 462, 564
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 2 cut(s) 67, 111
Eco130I CCWWGG 2 cut(s) 143, 477
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 444
EcoT14I CCWWGG 2 cut(s) 143, 477
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 2 cut(s) 143, 477
FaeI CATG 3 cut(s) 147, 233, 293
FaiI YATR 7 cut(s) 13, 38, 145, 231, 291, 467, 515
FatI CATG 3 cut(s) 143, 229, 289
FauI CCCGC 2 cut(s) 56, 123
Fnu4HI GCNGC 2 cut(s) 269, 331
FokI GGATG 2 cut(s) 75, 238
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 2 cut(s) 269, 331
FspBI CTAG 1 cut(s) 665
GlaI GCGC 2 cut(s) 62, 397
GluI GCNGC 2 cut(s) 269, 331
HaeIII GGCC 2 cut(s) 287, 413
HapII CCGG 2 cut(s) 686, 715
HgaI GACGC 1 cut(s) 563
HhaI GCGC 2 cut(s) 63, 398
Hin1II CATG 3 cut(s) 147, 233, 293
Hin6I GCGC 2 cut(s) 61, 396
HinP1I GCGC 2 cut(s) 61, 396
HinfI GANTC 3 cut(s) 366, 455, 582
HpaII CCGG 2 cut(s) 686, 715
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 3 cut(s) 337, 437, 447
Hpy188I TCNGA 3 cut(s) 202, 524, 734
Hpy8I GTNNAC 3 cut(s) 337, 437, 447
HpyAV CCTTC 3 cut(s) 141, 356, 698
HpyCH4III ACNGT 1 cut(s) 681
HpyCH4IV ACGT 1 cut(s) 595
HpyCH4V TGCA 4 cut(s) 4, 321, 337, 431
HpyF10VI GCNNNNNNNGC 4 cut(s) 58, 293, 327, 339
HpySE526I ACGT 1 cut(s) 595
Hsp92II CATG 3 cut(s) 147, 233, 293
HspAI GCGC 2 cut(s) 61, 396
KspI CCGCGG 1 cut(s) 331
Kzo9I GATC 4 cut(s) 83, 217, 462, 564
LmnI GCTCC 2 cut(s) 276, 717
LpnPI CCDG 9 cut(s) 36, 261, 278, 330, 412, 417, 656, 699, 728
Lsp1109I GCAGC 1 cut(s) 280
LweI GCATC 2 cut(s) 260, 283
MaeI CTAG 1 cut(s) 665
MaeII ACGT 1 cut(s) 595
MaeIII GTNAC 3 cut(s) 389, 575, 602
MalI GATC 4 cut(s) 85, 219, 464, 566
MboI GATC 4 cut(s) 83, 217, 462, 564
MboII GAAGA 3 cut(s) 214, 217, 464
MhlI GDGCHC 3 cut(s) 289, 339, 488
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 3 cut(s) 42, 138, 416
MluNI TGGCCA 1 cut(s) 413
MlyI GAGTC 1 cut(s) 449
Mox20I TGGCCA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 413
MseI TTAA 2 cut(s) 299, 386
Msp20I TGGCCA 1 cut(s) 413
MspA1I CMGCKG 1 cut(s) 330
MspI CCGG 2 cut(s) 686, 715
MspR9I CCNGG 2 cut(s) 687, 716
MvnI CGCG 2 cut(s) 63, 330
MwoI GCNNNNNNNGC 4 cut(s) 58, 293, 327, 339
NciI CCSGG 2 cut(s) 687, 716
NcoI CCATGG 1 cut(s) 143
NdeII GATC 4 cut(s) 83, 217, 462, 564
NlaIII CATG 3 cut(s) 147, 233, 293
NlaIV GGNNCC 1 cut(s) 287
NmuCI GTSAC 1 cut(s) 575
PaqCI CACCTGC 1 cut(s) 422
PfeI GAWTC 2 cut(s) 366, 582
PkrI GCNGC 2 cut(s) 270, 332
PleI GAGTC 1 cut(s) 449
PpsI GAGTC 1 cut(s) 449
PshAI GACNNNNGTC 1 cut(s) 442
Psp1406I AACGTT 1 cut(s) 595
PspN4I GGNNCC 1 cut(s) 287
PspOMI GGGCCC 1 cut(s) 285
PspPI GGNCC 3 cut(s) 285, 286, 444
RsaI GTAC 2 cut(s) 237, 678
RsaNI GTAC 2 cut(s) 236, 677
SacII CCGCGG 1 cut(s) 331
SaqAI TTAA 2 cut(s) 299, 386
SatI GCNGC 2 cut(s) 269, 331
Sau3AI GATC 4 cut(s) 83, 217, 462, 564
Sau96I GGNCC 3 cut(s) 285, 286, 444
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 2 cut(s) 687, 716
SduI GDGCHC 3 cut(s) 289, 339, 488
SfaNI GCATC 2 cut(s) 260, 283
Sfr303I CCGCGG 1 cut(s) 331
SgrBI CCGCGG 1 cut(s) 331
SinI GGWCC 1 cut(s) 444
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 3 cut(s) 42, 138, 416
SsiI CCGC 8 cut(s) 52, 63, 103, 116, 122, 328, 330, 382
SspMI CTAG 1 cut(s) 665
StyD4I CCNGG 2 cut(s) 685, 714
StyI CCWWGG 2 cut(s) 143, 477
TaaI ACNGT 1 cut(s) 681
TaiI ACGT 1 cut(s) 598
TaqI TCGA 3 cut(s) 216, 461, 585
TasI AATT 3 cut(s) 42, 138, 416
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 2 cut(s) 366, 582
Tru1I TTAA 2 cut(s) 299, 386
Tru9I TTAA 2 cut(s) 299, 386
TscAI CASTG 2 cut(s) 349, 646
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 2 cut(s) 349, 646
VneI GTGCAC 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 444
XapI RAATTY 1 cut(s) 416
XspI CTAG 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.