MD06G1212700.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000255
Physical Location & Seq
Forward (+)
34529637 .. 34531568
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1212700.v1.1.491

Sequence Viewer

Length: 1881 bp
ATGGTCAACAATTTCAACGACACTGTAATCACGCTAAACTCTCTTCCTTTGGGAAGGACAGAGAACAATTCGCCCACCTATCTCTCCTCCGGCAATCCCTGCCTCGATTTCTTCTTCCACGTCGTACCCGACACCCCAGCCTCGTACATCTGCCAACAGCTTCCCATGGCTTGGTCCCACGATCCCCTAACAACCCTCAAGCTCATTTGCAACCTCCGTGGGGTCCGCGGCACAGGGAAGTCCGATAGGGAAGGTTTCTACACGGCAGCCTATTGGCTCTTCCACAACCACCCAAAAACCCTAGGTTGTAACGTTGCATCCTTTGCCGAGTTCGGGTATTTCAAAGACGTCCTCGAGATTATGTACAGGGTTTTGGAAGGCCCCGACGTGAGGGAGGTCCAAAAGGCCAAGTGGTTGCGGTGGAAAGAGCGGTCGGAGTTGCAGCCGCATCGGCAGCGGCGCGGTTGGAATACTAGGACTAATTACACGATGACATCAGCTCCCTCTCCCGCTCAATCAGAAATGGAAATGATTGCAATGGAGAGAGAGAAATTGAGAAAGGAAAAAGCAAAAGAGAAGACCGTCGCCATGGCGAAGAAGGCTATCGAGACTTACGAGCGAGACCCAGAGTTTCAGTTCCTACACGAGCGGGTTTCAGATCTCTTTGTGGAGTGCTTGAAGACTGATATTGATTCCCTGAAAGATACGTCATCCCCTTCAAAGTACAAGGAGATAACCCTAGCGGCGAAGTGGTGCCCTTCCCTCAACGCTTCCTTCGACCGCTCCACGCTGCTCTGTGAGAGCATTGCAAGGAAGCTTTTCCCGAGAGAATCATACCCTGAATACCAAGGAATGGAGGAGGAAGAGTACTTGCACAAAGTCAGGCACCGGCTGAGGAAGGAGATTTTGGTGCTTTTGAGGAAGGCCATGGATTTTCCCAAGATTTACATAGCTGCCAAACAGTGGGACTCAATTCCTTACAACCGAGTGGCATCCGTGGCCATGAAGCGTTACAAGGGTAAGTTTTTGGAACATGACGGAGAGCGGTTCAGGAAGTATTTAGAGGACGTGAAAGCCGGCAAGGCCAAGATTGCCGCGGGTGCATTGCTGCCTCATGAGATCATAGCCCAGCTCAATATTGGCAACTATTATGGTCAAGCTTGTGCGGAAGAGGATTATGAAGTGGCTTCACTTCAATGGCAGAGAATGGTTGATGATTTGCTAAAGCAGGGCAAGATGAAGAACTGCTTAGCTGTGTGTGACGTGTCTGGAAGTATGCTTGGATGGTCTGGAAGTATGGGTGGATGGTCCGGAACCGGAAGTACGTATGGGATCTTGACCCATCTAGACACATCCCGTGACAATGTGAGTCCGATAGACGTGTCGGTGGCGCTGGGACTTTTGGTGTCTGAATTGAACGAGGAGCCATGGAAAGGAAAGGTTATCACTTTCAGTCGGTTTATTAAGGAGATGGAATGGGGCGCGAACACGGATTTCCAGAAGGTGTTTGATTTGATTCTTCAAGTGGCTGTGAATGGGAGATTGAAGCCAGAGCATATGATCAAAAGGATCTTCGTGTTCAGCGACATGGAGTTCGATCAGGCTTCGAGTAATAACTGGGAAACTGATTATGAGGCAATACAAAGAAAGTTTAAGGAAAAAGGGTACGAGGATGCGGTGCCACAGATTGTGTTTTGGAATCTGAGGCACTCGAGTTCTACACCGGTGTCTAATACACAACGAGGGGTGGCTTTGTTGAGTGGCTACTCCAAGAATTTGATGAAGCTGTTCTTGAATTACGAGGGGGAAGTTCACCCGGAGCTTATCATGGAACTAGCCATCTCCGGCGAAGAGTATCAGAGTCTGACTGTGGTAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

627

Amino Acids

71.84

Weight (kDa)

6.73

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 20 - 413 2.2e-133 Domain of unknown function (DUF2828)
DUF7788 PF25043 415 - 486 1.2e-11 Domain of unknown function (DUF7788)
DUF7788 PF25043 487 - 605 1.4e-52 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 351
AccB1I GGYRCC 3 cut(s) 753, 885, 1678
AccB7I CCANNNNNTGG 3 cut(s) 171, 853, 963
AccBSI CCGCTC 5 cut(s) 430, 512, 649, 783, 1045
AccII CGCG 4 cut(s) 228, 462, 1097, 1484
AccIII TCCGGA 1 cut(s) 1310
AclI AACGTT 1 cut(s) 312
AclWI GGATC 3 cut(s) 176, 1340, 1577
AcoI YGGCCR 1 cut(s) 999
AcsI RAATTY 1 cut(s) 1774
AcyI GRCGYC 1 cut(s) 348
AfaI GTAC 7 cut(s) 126, 146, 365, 725, 869, 1324, 1667
AfiI CCNNNNNNNGG 7 cut(s) 171, 220, 333, 390, 853, 963, 1433
AflIII ACRYGT 2 cut(s) 1263, 1380
AgeI ACCGGT 1 cut(s) 1723
AgsI TTSAA 9 cut(s) 16, 343, 679, 720, 1196, 1417, 1523, 1546, 1795
AjiI CACGTC 5 cut(s) 121, 388, 1069, 1264, 1381
AjuI GAANNNNNNNTTGG 2 cut(s) 890, 922
Alw26I GTCTC 2 cut(s) 602, 615
AlwI GGATC 3 cut(s) 176, 1340, 1577
AlwNI CAGNNNCTG 1 cut(s) 1864
Ama87I CYCGRG 3 cut(s) 353, 823, 1711
Aor13HI TCCGGA 1 cut(s) 1310
AoxI GGCC 5 cut(s) 379, 405, 924, 999, 1083
ApeKI GCWGC 6 cut(s) 266, 442, 454, 790, 953, 1108
ApoI RAATTY 1 cut(s) 1774
ArsI GACNNNNNNTTYG 2 cut(s) 1577, 1609
AsiGI ACCGGT 1 cut(s) 1723
Asp700I GAANNNNTTC 2 cut(s) 818, 1787
AspA2I CCTAGG 1 cut(s) 301
AspLEI GCGC 3 cut(s) 462, 1393, 1484
AspS9I GGNCC 5 cut(s) 174, 223, 380, 397, 1308
AsuC2I CCSGG 1 cut(s) 1817
AsuHPI GGTGA 1 cut(s) 1805
AvaI CYCGRG 3 cut(s) 353, 823, 1711
AvaII GGWCC 4 cut(s) 174, 223, 397, 1308
AvrII CCTAGG 1 cut(s) 301
BaeGI GKGCMC 1 cut(s) 758
BalI TGGCCA 1 cut(s) 1001
BanI GGYRCC 3 cut(s) 753, 885, 1678
BauI CACGAG 1 cut(s) 644
BbsI GAAGAC 2 cut(s) 584, 686
BbvCI CCTCAGC 1 cut(s) 893
BbvI GCAGC 6 cut(s) 278, 454, 466, 777, 940, 1095
BccI CCATC 5 cut(s) 1278, 1299, 1350, 1465, 1847
BceAI ACGGC 1 cut(s) 279
BcgI CGANNNNNNTGC 2 cut(s) 431, 465
BclI TGATCA 1 cut(s) 1560
BcnI CCSGG 1 cut(s) 1817
BcoDI GTCTC 2 cut(s) 602, 615
BfaI CTAG 5 cut(s) 302, 474, 740, 1346, 1835
BfoI RGCGCY 1 cut(s) 1394
BglI GCCNNNNNGGC 2 cut(s) 451, 1082
BglII AGATCT 1 cut(s) 658
BlnI CCTAGG 1 cut(s) 301
BlpI GCTNAGC 1 cut(s) 1249
BmcAI AGTACT 1 cut(s) 869
Bme1390I CCNGG 1 cut(s) 1817
Bme18I GGWCC 4 cut(s) 174, 223, 397, 1308
BmeT110I CYCGRG 3 cut(s) 353, 823, 1711
BmgBI CACGTC 5 cut(s) 121, 388, 1069, 1264, 1381
BmgT120I GGNCC 5 cut(s) 174, 223, 380, 397, 1308
BmiI GGNNCC 8 cut(s) 176, 224, 382, 755, 887, 1315, 1425, 1680
BmrFI CCNGG 1 cut(s) 1817
BmrI ACTGGG 1 cut(s) 1627
BmsI GCATC 4 cut(s) 326, 457, 1001, 1663
BmuI ACTGGG 1 cut(s) 1627
BpiI GAAGAC 2 cut(s) 584, 686
Bpu10I CCTNAGC 1 cut(s) 893
Bpu1102I GCTNAGC 1 cut(s) 1249
BpuEI CTTGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 1817
BsaAI YACGTR 1 cut(s) 1326
BsaHI GRCGYC 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 615
BsaWI WCCGGW 3 cut(s) 1310, 1316, 1723
BsaXI ACNNNNNCTCC 4 cut(s) 484, 514, 851, 881
Bsc4I CCNNNNNNNGG 7 cut(s) 171, 220, 333, 390, 853, 963, 1433
Bse118I RCCGGY 3 cut(s) 888, 1076, 1723
Bse1I ACTGG 1 cut(s) 1622
Bse3DI GCAATG 3 cut(s) 543, 804, 1103
BseAI TCCGGA 1 cut(s) 1310
BseGI GGATG 7 cut(s) 317, 710, 992, 1289, 1310, 1352, 1678
BseLI CCNNNNNNNGG 7 cut(s) 171, 220, 333, 390, 853, 963, 1433
BseMI GCAATG 3 cut(s) 543, 804, 1103
BseMII CTCAG 2 cut(s) 884, 1694
BseNI ACTGG 1 cut(s) 1622
BseRI GAGGAG 3 cut(s) 76, 872, 1436
BseSI GKGCMC 1 cut(s) 758
BseXI GCAGC 6 cut(s) 278, 454, 466, 777, 940, 1095
BseYI CCCAGC 3 cut(s) 136, 1128, 1393
Bsh1236I CGCG 4 cut(s) 228, 462, 1097, 1484
Bsh1285I CGRYCG 2 cut(s) 434, 781
BshFI GGCC 5 cut(s) 381, 407, 926, 1001, 1085
BshNI GGYRCC 3 cut(s) 753, 885, 1678
BshTI ACCGGT 1 cut(s) 1723
BsiEI CGRYCG 2 cut(s) 434, 781
BsiHKCI CYCGRG 3 cut(s) 353, 823, 1711
BsiSI CCGG 8 cut(s) 90, 889, 1077, 1311, 1317, 1724, 1817, 1845
BslFI GGGAC 3 cut(s) 160, 980, 1410
BslI CCNNNNNNNGG 7 cut(s) 171, 220, 333, 390, 853, 963, 1433
BsmAI GTCTC 2 cut(s) 602, 615
BsmFI GGGAC 3 cut(s) 160, 980, 1410
BsnI GGCC 5 cut(s) 381, 407, 926, 1001, 1085
Bso31I GGTCTC 1 cut(s) 615
BsoBI CYCGRG 3 cut(s) 353, 823, 1711
Bsp1286I GDGCHC 1 cut(s) 758
Bsp13I TCCGGA 1 cut(s) 1310
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 7 cut(s) 181, 658, 1119, 1332, 1560, 1569, 1597
Bsp1720I GCTNAGC 1 cut(s) 1249
Bsp19I CCATGG 4 cut(s) 165, 588, 927, 1427
BspANI GGCC 5 cut(s) 381, 407, 926, 1001, 1085
BspCNI CTCAG 2 cut(s) 885, 1695
BspEI TCCGGA 1 cut(s) 1310
BspFNI CGCG 4 cut(s) 228, 462, 1097, 1484
BspHI TCATGA 1 cut(s) 1114
BspLI GGNNCC 8 cut(s) 176, 224, 382, 755, 887, 1315, 1425, 1680
BspPI GGATC 3 cut(s) 176, 1340, 1577
BspQI GCTCTTC 1 cut(s) 284
BspT107I GGYRCC 3 cut(s) 753, 885, 1678
BspTNI GGTCTC 1 cut(s) 615
BsrBI CCGCTC 5 cut(s) 430, 512, 649, 783, 1045
BsrDI GCAATG 3 cut(s) 543, 804, 1103
BsrFI RCCGGY 3 cut(s) 888, 1076, 1723
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 1 cut(s) 1622
BssAI RCCGGY 3 cut(s) 888, 1076, 1723
BssMI GATC 7 cut(s) 181, 658, 1119, 1332, 1560, 1569, 1597
BssNI GRCGYC 1 cut(s) 348
BssSI CACGAG 1 cut(s) 644
BssT1I CCWWGG 6 cut(s) 165, 301, 588, 847, 927, 1427
Bst2BI CACGAG 1 cut(s) 644
Bst4CI ACNGT 4 cut(s) 25, 583, 963, 1870
Bst6I CTCTTC 5 cut(s) 48, 284, 858, 1164, 1845
BstACI GRCGYC 1 cut(s) 348
BstAPI GCANNNNNTGC 2 cut(s) 99, 323
BstAUI TGTACA 1 cut(s) 363
BstBAI YACGTR 1 cut(s) 1326
BstC8I GCNNGC 1 cut(s) 1078
BstDEI CTNAG 3 cut(s) 893, 1249, 1703
BstDSI CCRYGG 8 cut(s) 165, 217, 226, 588, 927, 996, 1095, 1427
BstF5I GGATG 7 cut(s) 317, 710, 992, 1289, 1310, 1352, 1678
BstFNI CGCG 4 cut(s) 228, 462, 1097, 1484
BstH2I RGCGCY 1 cut(s) 1394
BstHHI GCGC 3 cut(s) 462, 1393, 1484
BstKTI GATC 7 cut(s) 184, 661, 1122, 1335, 1563, 1572, 1600
BstMAI GTCTC 2 cut(s) 602, 615
BstMBI GATC 7 cut(s) 181, 658, 1119, 1332, 1560, 1569, 1597
BstMCI CGRYCG 2 cut(s) 434, 781
BstMWI GCNNNNNNNGC 9 cut(s) 99, 323, 451, 454, 599, 998, 1082, 1091, 1100
BstSCI CCNGG 1 cut(s) 1815
BstSLI GKGCMC 1 cut(s) 758
BstSNI TACGTA 1 cut(s) 1326
BstUI CGCG 4 cut(s) 228, 462, 1097, 1484
BstV1I GCAGC 6 cut(s) 278, 454, 466, 777, 940, 1095
BstV2I GAAGAC 2 cut(s) 584, 686
BstX2I RGATCY 3 cut(s) 658, 1332, 1569
BstYI RGATCY 3 cut(s) 658, 1332, 1569
BsuRI GGCC 5 cut(s) 381, 407, 926, 1001, 1085
BtgI CCRYGG 8 cut(s) 165, 217, 226, 588, 927, 996, 1095, 1427
BtrI CACGTC 5 cut(s) 121, 388, 1069, 1264, 1381
BtsCI GGATG 7 cut(s) 317, 710, 992, 1289, 1310, 1352, 1678
BtsIMutI CAGTG 2 cut(s) 21, 968
Cac8I GCNNGC 1 cut(s) 1078
CaiI CAGNNNCTG 1 cut(s) 1864
CciI TCATGA 1 cut(s) 1114
CfoI GCGC 3 cut(s) 462, 1393, 1484
Cfr10I RCCGGY 3 cut(s) 888, 1076, 1723
Cfr13I GGNCC 5 cut(s) 174, 223, 380, 397, 1308
Cfr42I CCGCGG 2 cut(s) 229, 1098
Csp6I GTAC 7 cut(s) 125, 145, 364, 724, 868, 1323, 1666
CspAI ACCGGT 1 cut(s) 1723
CspCI CAANNNNNGTGG 2 cut(s) 199, 234
CviAII CATG 9 cut(s) 166, 589, 928, 1003, 1034, 1115, 1428, 1588, 1828
CviQI GTAC 7 cut(s) 125, 145, 364, 724, 868, 1323, 1666
DdeI CTNAG 3 cut(s) 893, 1249, 1703
DpnI GATC 7 cut(s) 183, 660, 1121, 1334, 1562, 1571, 1599
DpnII GATC 7 cut(s) 181, 658, 1119, 1332, 1560, 1569, 1597
EaeI YGGCCR 1 cut(s) 999
Eam1104I CTCTTC 5 cut(s) 48, 284, 858, 1164, 1845
EarI CTCTTC 5 cut(s) 48, 284, 858, 1164, 1845
Eco105I TACGTA 1 cut(s) 1326
Eco130I CCWWGG 6 cut(s) 165, 301, 588, 847, 927, 1427
Eco31I GGTCTC 1 cut(s) 615
Eco47I GGWCC 4 cut(s) 174, 223, 397, 1308
Eco88I CYCGRG 3 cut(s) 353, 823, 1711
EcoO109I RGGNCCY 1 cut(s) 380
EcoT14I CCWWGG 6 cut(s) 165, 301, 588, 847, 927, 1427
ErhI CCWWGG 6 cut(s) 165, 301, 588, 847, 927, 1427
FaeI CATG 9 cut(s) 169, 592, 931, 1006, 1037, 1118, 1431, 1591, 1831
FalI AAGNNNNNCTT 4 cut(s) 1232, 1264, 1775, 1807
FaqI GGGAC 3 cut(s) 160, 980, 1410
FatI CATG 9 cut(s) 165, 588, 927, 1002, 1033, 1114, 1427, 1587, 1827
FauI CCCGC 3 cut(s) 517, 642, 1090
FauNDI CATATG 1 cut(s) 1557
FbaI TGATCA 1 cut(s) 1560
FokI GGATG 7 cut(s) 304, 697, 979, 1296, 1317, 1339, 1685
FspBI CTAG 5 cut(s) 302, 474, 740, 1346, 1835
GlaI GCGC 3 cut(s) 461, 1392, 1483
GsaI CCCAGC 3 cut(s) 140, 1132, 1397
HaeII RGCGCY 1 cut(s) 1394
HaeIII GGCC 5 cut(s) 381, 407, 926, 1001, 1085
HapII CCGG 8 cut(s) 90, 889, 1077, 1311, 1317, 1724, 1817, 1845
HhaI GCGC 3 cut(s) 462, 1393, 1484
Hin1I GRCGYC 1 cut(s) 348
Hin1II CATG 9 cut(s) 169, 592, 931, 1006, 1037, 1118, 1431, 1591, 1831
Hin6I GCGC 3 cut(s) 460, 1391, 1482
HinP1I GCGC 3 cut(s) 460, 1391, 1482
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 2 cut(s) 815, 1158
HinfI GANTC 7 cut(s) 692, 830, 968, 1369, 1516, 1699, 1861
HpaII CCGG 8 cut(s) 90, 889, 1077, 1311, 1317, 1724, 1817, 1845
HphI GGTGA 1 cut(s) 1805
Hpy166II GTNNAC 2 cut(s) 7, 1813
Hpy188I TCNGA 9 cut(s) 244, 436, 520, 658, 1374, 1411, 1704, 1860, 1866
Hpy8I GTNNAC 2 cut(s) 7, 1813
Hpy99I CGWCG 3 cut(s) 125, 389, 587
HpyCH4III ACNGT 4 cut(s) 25, 583, 963, 1870
HpyCH4IV ACGT 9 cut(s) 120, 312, 348, 387, 707, 1068, 1263, 1325, 1380
HpyCH4V TGCA 7 cut(s) 210, 317, 442, 536, 809, 874, 1103
HpyF10VI GCNNNNNNNGC 9 cut(s) 99, 323, 451, 454, 599, 998, 1082, 1091, 1100
HpyF3I CTNAG 3 cut(s) 893, 1249, 1703
HpySE526I ACGT 9 cut(s) 120, 312, 348, 387, 707, 1068, 1263, 1325, 1380
Hsp92I GRCGYC 1 cut(s) 348
Hsp92II CATG 9 cut(s) 169, 592, 931, 1006, 1037, 1118, 1431, 1591, 1831
HspAI GCGC 3 cut(s) 460, 1391, 1482
Kpn2I TCCGGA 1 cut(s) 1310
KroI GCCGGC 1 cut(s) 1076
KroNI GCCGGC 1 cut(s) 1078
Ksp22I TGATCA 1 cut(s) 1560
KspI CCGCGG 2 cut(s) 229, 1098
Kzo9I GATC 7 cut(s) 181, 658, 1119, 1332, 1560, 1569, 1597
LguI GCTCTTC 1 cut(s) 284
LmnI GCTCC 4 cut(s) 505, 788, 1423, 1819
Lsp1109I GCAGC 6 cut(s) 278, 454, 466, 777, 940, 1095
LweI GCATC 4 cut(s) 326, 457, 1001, 1663
MaeI CTAG 5 cut(s) 302, 474, 740, 1346, 1835
MaeII ACGT 9 cut(s) 120, 312, 348, 387, 707, 1068, 1263, 1325, 1380
MaeIII GTNAC 4 cut(s) 308, 1010, 1259, 1358
MalI GATC 7 cut(s) 183, 660, 1121, 1334, 1562, 1571, 1599
MbiI CCGCTC 5 cut(s) 430, 512, 649, 783, 1045
MboI GATC 7 cut(s) 181, 658, 1119, 1332, 1560, 1569, 1597
MflI RGATCY 3 cut(s) 658, 1332, 1569
MhlI GDGCHC 1 cut(s) 758
MlsI TGGCCA 1 cut(s) 1001
MluCI AATT 8 cut(s) 10, 67, 481, 551, 972, 1412, 1774, 1795
MluNI TGGCCA 1 cut(s) 1001
MlyI GAGTC 3 cut(s) 962, 1378, 1870
MmeI TCCRAC 2 cut(s) 414, 446
Mox20I TGGCCA 1 cut(s) 1001
MroI TCCGGA 1 cut(s) 1310
MroNI GCCGGC 1 cut(s) 1076
MroXI GAANNNNTTC 2 cut(s) 818, 1787
MscI TGGCCA 1 cut(s) 1001
MseI TTAA 2 cut(s) 1464, 1653
MslI CAYNNNNRTG 1 cut(s) 1195
Msp20I TGGCCA 1 cut(s) 1001
MspA1I CMGCKG 3 cut(s) 228, 457, 1097
MspI CCGG 8 cut(s) 90, 889, 1077, 1311, 1317, 1724, 1817, 1845
MspR9I CCNGG 1 cut(s) 1817
MvnI CGCG 4 cut(s) 228, 462, 1097, 1484
MwoI GCNNNNNNNGC 9 cut(s) 99, 323, 451, 454, 599, 998, 1082, 1091, 1100
NaeI GCCGGC 1 cut(s) 1078
NciI CCSGG 1 cut(s) 1817
NcoI CCATGG 4 cut(s) 165, 588, 927, 1427
NdeI CATATG 1 cut(s) 1557
NdeII GATC 7 cut(s) 181, 658, 1119, 1332, 1560, 1569, 1597
NgoMIV GCCGGC 1 cut(s) 1076
NlaIII CATG 9 cut(s) 169, 592, 931, 1006, 1037, 1118, 1431, 1591, 1831
NlaIV GGNNCC 8 cut(s) 176, 224, 382, 755, 887, 1315, 1425, 1680
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 2 cut(s) 1259, 1358
PaeR7I CTCGAG 2 cut(s) 353, 1711
PagI TCATGA 1 cut(s) 1114
PciSI GCTCTTC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 4 cut(s) 126, 612, 774, 1581
PdiI GCCGGC 1 cut(s) 1078
PdmI GAANNNNTTC 2 cut(s) 818, 1787
PfeI GAWTC 4 cut(s) 692, 830, 1516, 1699
PflMI CCANNNNNTGG 3 cut(s) 171, 853, 963
PinAI ACCGGT 1 cut(s) 1723
PleI GAGTC 3 cut(s) 962, 1377, 1869
PpsI GAGTC 3 cut(s) 962, 1377, 1869
Ppu21I YACGTR 1 cut(s) 1326
Psp1406I AACGTT 1 cut(s) 312
PspFI CCCAGC 3 cut(s) 136, 1128, 1393
PspN4I GGNNCC 8 cut(s) 176, 224, 382, 755, 887, 1315, 1425, 1680
PspPI GGNCC 5 cut(s) 174, 223, 380, 397, 1308
PspXI VCTCGAGB 1 cut(s) 1711
PsrI GAACNNNNNNTAC 2 cut(s) 1306, 1338
PstNI CAGNNNCTG 1 cut(s) 1864
PsuI RGATCY 3 cut(s) 658, 1332, 1569
RsaI GTAC 7 cut(s) 126, 146, 365, 725, 869, 1324, 1667
RsaNI GTAC 7 cut(s) 125, 145, 364, 724, 868, 1323, 1666
RseI CAYNNNNRTG 1 cut(s) 1195
SacII CCGCGG 2 cut(s) 229, 1098
SapI GCTCTTC 1 cut(s) 284
SaqAI TTAA 2 cut(s) 1464, 1653
Sau3AI GATC 7 cut(s) 181, 658, 1119, 1332, 1560, 1569, 1597
Sau96I GGNCC 5 cut(s) 174, 223, 380, 397, 1308
ScaI AGTACT 1 cut(s) 869
SchI GAGTC 3 cut(s) 962, 1378, 1870
ScrFI CCNGG 1 cut(s) 1817
SduI GDGCHC 1 cut(s) 758
SfaNI GCATC 4 cut(s) 326, 457, 1001, 1663
Sfr274I CTCGAG 2 cut(s) 353, 1711
Sfr303I CCGCGG 2 cut(s) 229, 1098
SgrAI CRCCGGYG 1 cut(s) 1723
SgrBI CCGCGG 2 cut(s) 229, 1098
SinI GGWCC 4 cut(s) 174, 223, 397, 1308
SlaI CTCGAG 2 cut(s) 353, 1711
SmiMI CAYNNNNRTG 1 cut(s) 1195
SmlI CTYRAG 3 cut(s) 197, 353, 1711
SmoI CTYRAG 3 cut(s) 197, 353, 1711
SnaBI TACGTA 1 cut(s) 1326
Sse9I AATT 8 cut(s) 10, 67, 481, 551, 972, 1412, 1774, 1795
SspI AATATT 1 cut(s) 1138
SspMI CTAG 5 cut(s) 302, 474, 740, 1346, 1835
StyD4I CCNGG 1 cut(s) 1815
StyI CCWWGG 6 cut(s) 165, 301, 588, 847, 927, 1427
TaaI ACNGT 4 cut(s) 25, 583, 963, 1870
TaiI ACGT 9 cut(s) 123, 315, 351, 390, 710, 1071, 1266, 1328, 1383
TaqI TCGA 7 cut(s) 105, 354, 606, 777, 1596, 1607, 1712
TasI AATT 8 cut(s) 10, 67, 481, 551, 972, 1412, 1774, 1795
TatI WGTACW 3 cut(s) 363, 723, 867
TauI GCSGC 5 cut(s) 231, 448, 460, 746, 1097
TfiI GAWTC 4 cut(s) 692, 830, 1516, 1699
Tru1I TTAA 2 cut(s) 1464, 1653
Tru9I TTAA 2 cut(s) 1464, 1653
TscAI CASTG 2 cut(s) 28, 968
TseFI GTSAC 2 cut(s) 1259, 1358
TseI GCWGC 6 cut(s) 266, 442, 454, 790, 953, 1108
Tsp45I GTSAC 2 cut(s) 1259, 1358
TspDTI ATGAA 4 cut(s) 1019, 1194, 1253, 1796
TspGWI ACGGA 4 cut(s) 206, 985, 1053, 1505
TspRI CASTG 2 cut(s) 28, 968
Van91I CCANNNNNTGG 3 cut(s) 171, 853, 963
VpaK11BI GGWCC 4 cut(s) 174, 223, 397, 1308
XapI RAATTY 1 cut(s) 1774
XbaI TCTAGA 1 cut(s) 1345
XcmI CCANNNNNNNNNTGG 1 cut(s) 1136
XhoI CTCGAG 2 cut(s) 353, 1711
XmaJI CCTAGG 1 cut(s) 301
XmnI GAANNNNTTC 2 cut(s) 818, 1787
XspI CTAG 5 cut(s) 302, 474, 740, 1346, 1835
ZraI GACGTC 1 cut(s) 349
ZrmI AGTACT 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.