pycom10g15060

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0000255
Physical Location & Seq
Forward (+)
18389944 .. 18391354
1411 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15060.1

Sequence Viewer

Length: 753 bp
ATGATTGGGAGGGGAGAGGTTGAAGGTATCATAAAGTTGCGGGAGTTGCGGGCCTTGGTGGAGAGAAGGTGGAAACCTACAGTACTTTTCTTTGCCAAGGAACATAGCGAGTGTCCTGACTATGTGGCCGGAGGTGGACCAAAAGGCATTGTGCTCAACGGTGATGATCCGCCGGTGCCACTACAGGACAATGATTTTCATTGTTTCATGGAATGCTACAACCAGTGGGAATATCAGCATAGGTTTTTACAAGACCGACTTGGCGGACGGAGCAAATTGTTGATTGATCTTAGTGATGAAGCGGAATACCAAGATGATGTTACAGAGGCCGATTACACAGACATGGTCCTATATCGGCTCATGGATGAGGTTGTGGTGCTCTTGAAGGACGCCTTCTCTTCTCCCAAAAAAGAGGACAGAAGCTCTGTGGTTCACAAATATTTGGAGGAAGTGAAAGCGGGGAAAGTGGCCGAGCTTCAGTGGATGGCAATGGTTGAGGACTTGAAAAAGCAAGGCAAGATGAACAACTGCTTGGCCGTATGCGACGTCATCAACTCGACATTCAAAGTTGATATCCCCATTGCTTTGGGACTTTTGGTGTCTGAATTGAGTGAAAATCCATGGAAAGGGAATGTGATCAGTCACGGCGATTGCCATGAGGTGCATTTTATACAGGGCGAGGATGTTCGGTGCAAGCCACCGAGACTGATCATAGTGGTGAATATTGTAGCAACTGGAAGACTGAGTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

251

Amino Acids

28.38

Weight (kDa)

5.16

Isoelectric Point (pI)

39.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 176 - 227 1.8e-08 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 549
AccB1I GGYRCC 1 cut(s) 175
AciI CCGC 6 cut(s) 40, 49, 170, 264, 302, 458
AclWI GGATC 1 cut(s) 161
AcoI YGGCCR 3 cut(s) 126, 468, 534
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 2 cut(s) 390, 546
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 626
AgsI TTSAA 4 cut(s) 23, 385, 505, 565
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 2 cut(s) 423, 475
AluI AGCT 2 cut(s) 423, 475
Alw21I GWGCWC 2 cut(s) 156, 381
Alw26I GTCTC 1 cut(s) 697
AlwI GGATC 1 cut(s) 161
AoxI GGCC 5 cut(s) 51, 126, 327, 468, 534
AspS9I GGNCC 3 cut(s) 51, 137, 346
AsuHPI GGTGA 2 cut(s) 173, 730
AvaII GGWCC 2 cut(s) 137, 346
BanI GGYRCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 745
Bbv12I GWGCWC 2 cut(s) 156, 381
BccI CCATC 1 cut(s) 478
BceAI ACGGC 2 cut(s) 521, 661
BclI TGATCA 2 cut(s) 636, 708
BcoDI GTCTC 1 cut(s) 697
BfmI CTRYAG 2 cut(s) 78, 182
BmcAI AGTACT 1 cut(s) 84
Bme18I GGWCC 2 cut(s) 137, 346
BmgT120I GGNCC 3 cut(s) 51, 137, 346
BmiI GGNNCC 1 cut(s) 177
BpiI GAAGAC 1 cut(s) 745
BsaHI GRCGYC 2 cut(s) 390, 546
BsaJI CCNNGG 3 cut(s) 54, 96, 620
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 626
Bse118I RCCGGY 1 cut(s) 172
Bse1I ACTGG 2 cut(s) 223, 739
Bse3DI GCAATG 2 cut(s) 495, 579
BseDI CCNNGG 3 cut(s) 54, 96, 620
BseGI GGATG 3 cut(s) 370, 489, 688
BseLI CCNNNNNNNGG 1 cut(s) 626
BseMI GCAATG 2 cut(s) 495, 579
BseMII CTCAG 1 cut(s) 734
BseNI ACTGG 2 cut(s) 223, 739
BshFI GGCC 5 cut(s) 53, 128, 329, 470, 536
BshNI GGYRCC 1 cut(s) 175
BsiHKAI GWGCWC 2 cut(s) 156, 381
BsiSI CCGG 2 cut(s) 129, 173
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 1 cut(s) 626
BsmAI GTCTC 1 cut(s) 697
BsmFI GGGAC 1 cut(s) 603
BsmI GAATGC 1 cut(s) 218
BsnI GGCC 5 cut(s) 53, 128, 329, 470, 536
Bsp1286I GDGCHC 2 cut(s) 156, 381
Bsp143I GATC 4 cut(s) 166, 286, 636, 708
Bsp19I CCATGG 1 cut(s) 620
BspACI CCGC 6 cut(s) 40, 49, 170, 264, 302, 458
BspANI GGCC 5 cut(s) 53, 128, 329, 470, 536
BspCNI CTCAG 1 cut(s) 735
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 175
BsrDI GCAATG 2 cut(s) 495, 579
BsrFI RCCGGY 1 cut(s) 172
BsrI ACTGG 2 cut(s) 223, 739
BssAI RCCGGY 1 cut(s) 172
BssECI CCNNGG 3 cut(s) 54, 96, 620
BssMI GATC 4 cut(s) 166, 286, 636, 708
BssNI GRCGYC 2 cut(s) 390, 546
BssT1I CCWWGG 3 cut(s) 54, 96, 620
Bst4CI ACNGT 2 cut(s) 82, 161
Bst6I CTCTTC 1 cut(s) 403
BstACI GRCGYC 2 cut(s) 390, 546
BstC8I GCNNGC 2 cut(s) 51, 695
BstDEI CTNAG 2 cut(s) 290, 743
BstDSI CCRYGG 1 cut(s) 620
BstF5I GGATG 3 cut(s) 370, 489, 688
BstKTI GATC 4 cut(s) 169, 289, 639, 711
BstMAI GTCTC 1 cut(s) 697
BstMBI GATC 4 cut(s) 166, 286, 636, 708
BstMWI GCNNNNNNNGC 2 cut(s) 46, 270
BstSFI CTRYAG 2 cut(s) 78, 182
BstV2I GAAGAC 1 cut(s) 745
BstXI CCANNNNNNTGG 1 cut(s) 586
BsuRI GGCC 5 cut(s) 53, 128, 329, 470, 536
BtgI CCRYGG 1 cut(s) 620
BtsCI GGATG 3 cut(s) 370, 489, 688
BtsIMutI CAGTG 2 cut(s) 230, 485
Cac8I GCNNGC 2 cut(s) 51, 695
Cfr10I RCCGGY 1 cut(s) 172
Cfr13I GGNCC 3 cut(s) 51, 137, 346
CseI GACGC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 83
CviAII CATG 5 cut(s) 208, 343, 361, 621, 656
CviJI RGCY 9 cut(s) 53, 128, 329, 358, 423, 470, 475, 536, 697
CviKI_1 RGCY 9 cut(s) 53, 128, 329, 358, 423, 470, 475, 536, 697
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 290, 743
DpnI GATC 4 cut(s) 168, 288, 638, 710
DpnII GATC 4 cut(s) 166, 286, 636, 708
EaeI YGGCCR 3 cut(s) 126, 468, 534
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
EciI GGCGGA 2 cut(s) 159, 279
Eco130I CCWWGG 3 cut(s) 54, 96, 620
Eco32I GATATC 1 cut(s) 574
Eco47I GGWCC 2 cut(s) 137, 346
Eco57I CTGAAG 1 cut(s) 461
EcoRV GATATC 1 cut(s) 574
EcoT14I CCWWGG 3 cut(s) 54, 96, 620
ErhI CCWWGG 3 cut(s) 54, 96, 620
FaeI CATG 5 cut(s) 211, 346, 364, 624, 659
FalI AAGNNNNNCTT 4 cut(s) 243, 275, 377, 409
FaqI GGGAC 1 cut(s) 603
FatI CATG 5 cut(s) 207, 342, 360, 620, 655
FauI CCCGC 3 cut(s) 33, 42, 451
FbaI TGATCA 2 cut(s) 636, 708
FokI GGATG 3 cut(s) 377, 496, 695
HaeIII GGCC 5 cut(s) 53, 128, 329, 470, 536
HapII CCGG 2 cut(s) 129, 173
HgaI GACGC 1 cut(s) 398
Hin1I GRCGYC 2 cut(s) 390, 546
Hin1II CATG 5 cut(s) 211, 346, 364, 624, 659
HpaII CCGG 2 cut(s) 129, 173
HphI GGTGA 2 cut(s) 173, 730
Hpy166II GTNNAC 2 cut(s) 137, 433
Hpy188I TCNGA 1 cut(s) 604
Hpy188III TCNNGA 2 cut(s) 116, 382
Hpy8I GTNNAC 2 cut(s) 137, 433
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 4 cut(s) 17, 60, 379, 403
HpyCH4III ACNGT 2 cut(s) 82, 161
HpyCH4IV ACGT 1 cut(s) 546
HpyCH4V TGCA 2 cut(s) 664, 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 270
HpyF3I CTNAG 2 cut(s) 290, 743
HpySE526I ACGT 1 cut(s) 546
Hsp92I GRCGYC 2 cut(s) 390, 546
Hsp92II CATG 5 cut(s) 211, 346, 364, 624, 659
Ksp22I TGATCA 2 cut(s) 636, 708
Kzo9I GATC 4 cut(s) 166, 286, 636, 708
LmnI GCTCC 1 cut(s) 270
LpnPI CCDG 7 cut(s) 129, 142, 170, 186, 236, 659, 720
MaeII ACGT 1 cut(s) 546
MaeIII GTNAC 2 cut(s) 319, 641
MalI GATC 4 cut(s) 168, 288, 638, 710
MboI GATC 4 cut(s) 166, 286, 636, 708
MboII GAAGA 2 cut(s) 390, 750
MhlI GDGCHC 2 cut(s) 156, 381
MluCI AATT 2 cut(s) 275, 605
MslI CAYNNNNRTG 2 cut(s) 341, 716
MspI CCGG 2 cut(s) 129, 173
Mva1269I GAATGC 1 cut(s) 218
MwoI GCNNNNNNNGC 2 cut(s) 46, 270
NcoI CCATGG 1 cut(s) 620
NdeII GATC 4 cut(s) 166, 286, 636, 708
NlaIII CATG 5 cut(s) 211, 346, 364, 624, 659
NlaIV GGNNCC 1 cut(s) 177
NmeAIII GCCGAG 1 cut(s) 496
NmuCI GTSAC 1 cut(s) 641
PctI GAATGC 1 cut(s) 218
PflFI GACNNNGTC 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 3 cut(s) 51, 137, 346
PsyI GACNNNGTC 1 cut(s) 344
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 2 cut(s) 341, 716
Sau3AI GATC 4 cut(s) 166, 286, 636, 708
Sau96I GGNCC 3 cut(s) 51, 137, 346
ScaI AGTACT 1 cut(s) 84
SduI GDGCHC 2 cut(s) 156, 381
SfcI CTRYAG 2 cut(s) 78, 182
SgrAI CRCCGGYG 1 cut(s) 172
SinI GGWCC 2 cut(s) 137, 346
SmiMI CAYNNNNRTG 2 cut(s) 341, 716
Sse9I AATT 2 cut(s) 275, 605
SsiI CCGC 6 cut(s) 40, 49, 170, 264, 302, 458
SspI AATATT 2 cut(s) 440, 724
StyI CCWWGG 3 cut(s) 54, 96, 620
TaaI ACNGT 2 cut(s) 82, 161
TaiI ACGT 1 cut(s) 549
TaqI TCGA 1 cut(s) 557
TaqII GACCGA 1 cut(s) 270
TasI AATT 2 cut(s) 275, 605
TatI WGTACW 1 cut(s) 82
TscAI CASTG 2 cut(s) 230, 485
TseFI GTSAC 1 cut(s) 641
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 4 cut(s) 188, 196, 312, 536
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 2 cut(s) 230, 485
Tth111I GACNNNGTC 1 cut(s) 344
VpaK11BI GGWCC 2 cut(s) 137, 346
ZraI GACGTC 1 cut(s) 547
ZrmI AGTACT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.