FvH4_5g12462

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000255
Physical Location & Seq
Forward (+)
7038289 .. 7040752
2464 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12462.t1

Sequence Viewer

Length: 2163 bp
ATGGTCTCCAATTTCAATAGCACCACGATAACTCCACCCAGACCCCCAATGGGTTTGACCGAGAACGGTTCGCCGACTTTTCTCACCTCCGGCAACCCTTGCCTTGATTTCTTTTTCCACGTGGTTCCTGACACCAAGCCGGAATATTTCAACCAACAGCTCCCGGTGGCTTGGTCCCACGATGCCCTAACCACTCTCAAGCTCATCTGCAACCTGCGAGGTGTACGTGGCACCGGAAAGAATGACAAAGAAGGGTTCTACACTGCAGCGTTATGGCTCTACAACCACCACCCCAAAACCCTAGCTTACAATGTAGCCTCGGTTGCCGCTTTTGGGTATTTCAAAGACTTGCCGGAGATTTTATACCGGATTCTAGAAGGCCAAGACATTAGGAAGACCCAAAAGGAAGAGTGGGAAAGGATCAAGCGCTCTTGCTATAAGGGACCGGGTAAGGTGGACGGGTTAAGGTCACTAAAGCTCCCACATTTACTGGGTCCGGCGGATCAACCACCTAGAGATGTTAAACTGATGAGCCTTTGGATGAAACTAATCGCCGTCAAATCTAACAAGAAAAATCTCGGCGATGGGGAGTATAAAACTGCTCAAGAAAAATGGGCAGCGGAGAGAGACGAACTCAAAAGTGACGAAGCGAGGGAACTGATGCATCAAAAGATCATAGACAAAATCAAGAATGCTGTGGCTAGGTATGAGCAAGACTCGGAATTGAAGTTCCTTTACGAACAAATTTGGGATGTGTTTGGGGACAGCTTGAAGTCCATGGAAGCGGAGACGGAGGCAGAGAGGAACAAGATGATCCGATTGAGAAAAGAAAAATTGAGGGACAAGAGGTATGAACGAATGTATGACATGGCCAAGAAGGTGGTTTCCAGGTACCAGCAGGACTCCAATTTCCAGTTGCTTCACGAGCAGATATCGGAAGTTTTCGCAGAGTGCTTGAGATCAGACATGGAATGCTTGAAGAAGCACCAGAGAAACAAGATAAGCCTCGCAGCGAAATGGTGCCCTTCCCTAGACTCCTCCCTTGACAAGGCCACTTTGCTTTGCGAAAGCATTGCCAAGAAGGTTTTCCCGCGGGAATTGTACCCGGAATATGAGGGACTAGAGGAAGCACACTATGCTTACAGAGTGAGAGACCGGCTGAGGAAGGAGGTTTATGTGCCGTTGAGGAGGGCATTGGAGTTGCCTGAACTTTATATGACTGACAGAGAGTGGAACTCACTTCCTTACAATAGAGTGGCCTCCGTGGCAATGAAGCTATACAAAGAAAAATTCTTTGAGAAGGACTCTGAGAGGTTTAAGAATTATCTGGCAGAAGTGGAAGAAGGCAAGTCCAAGATTGCGGCCGGTGCGCTGCTTCCGCATGACATCATAGCCTCTCTGGAAGATGGGGATGGAGGGCAAGTCGCCGAGCTTCAATGGAAGAGAGTGGTGGATGACTTGTTGAAGGAAGGCAAGATGAAGAACTGCTTGGCTGTGTGTGATGTGTCTGGAAGCATGCATGGGACTCCTATGGATGTGTGTGTGGCTTTGGGGATGTTGGTGGCTGAATTGACTGAGGAGCCCTGGAAAGGGAAGGTGATCACATTCAGTGCCAATCCTCAGCTTCATTTGATTCAAGGGGATGATCTAAGATCCAAGTGTGAATTTGTGAGGAGGATGGATTGGGGAATGAACACTGATTTTCAAAAGGTGTTTGATCTGATACTCCAAGTGGCTGTGAATGGGAACTTGAAGCCGGAGCAGATGATAAAGAGGGTGTTTGTGTTCAGTGACATGGAGTTTGATCAGGCTTCGGGGTATAGGAGTGGTTATGGTTATGGATATAGATATTCTAGCTATTCTGAAAGCGAAAGCGAGGATGATGTGTCTAAAAACAGATGGGAGACTGATTATGAGGTGATACAGAGAAAGTTTGAAGAGAAGGGGTATGGTGATGCGGTGCCTCAGATAGTGTTTTGGAATCTGAGGGACTCGAAATCAACGCCGGTGTTGGCAACACAACCAGGGGTAGCGCTGCTGAGTGGCTTCTCCAAGAATGCACTCAAGATGTTCTTGGATGATGATGGCCAAATCAGGCCGAACCGTATCATGGAGAAAGCTATCTCAGGGAAAGAGTATCAACATCTAGTTGTTGTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

721

Amino Acids

83.04

Weight (kDa)

6.72

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 20 - 262 4.8e-51 Domain of unknown function (DUF2828)
DUF2828 PF11443 263 - 493 5.3e-81 Domain of unknown function (DUF2828)
DUF7788 PF25043 495 - 699 2.9e-81 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 222
Acc65I GGTACC 1 cut(s) 891
AccB1I GGYRCC 4 cut(s) 230, 891, 1020, 1960
AccII CGCG 1 cut(s) 1093
AciI CCGC 9 cut(s) 327, 500, 620, 785, 1091, 1093, 1361, 1379, 1958
AclWI GGATC 4 cut(s) 428, 510, 808, 1647
AcoI YGGCCR 3 cut(s) 870, 1362, 2086
AcsI RAATTY 3 cut(s) 744, 1289, 1664
AcvI CACGTG 1 cut(s) 121
AfaI GTAC 3 cut(s) 225, 893, 1103
AfeI AGCGCT 2 cut(s) 428, 2034
AfiI CCNNNNNNNGG 6 cut(s) 50, 333, 1048, 1589, 1590, 2110
AjnI CCWGG 3 cut(s) 887, 1583, 2023
AjuI GAANNNNNNNTTGG 4 cut(s) 1070, 1102, 1472, 1504
AloI GAACNNNNNNTCC 2 cut(s) 713, 745
Alw26I GTCTC 5 cut(s) 10, 621, 782, 1146, 1898
AlwI GGATC 4 cut(s) 428, 510, 808, 1647
Aor51HI AGCGCT 2 cut(s) 428, 2034
AoxI GGCC 7 cut(s) 379, 870, 1050, 1257, 1362, 2086, 2096
ApeKI GCWGC 5 cut(s) 266, 617, 1010, 1372, 2035
ApoI RAATTY 3 cut(s) 744, 1289, 1664
ArsI GACNNNNNNTTYG 2 cut(s) 1784, 1816
Asp700I GAANNNNTTC 1 cut(s) 1085
Asp718I GGTACC 1 cut(s) 891
AspLEI GCGC 3 cut(s) 429, 1372, 2035
AspS9I GGNCC 3 cut(s) 174, 443, 494
AsuC2I CCSGG 3 cut(s) 164, 447, 1106
AsuHPI GGTGA 4 cut(s) 76, 1609, 1930, 1964
AvaII GGWCC 3 cut(s) 174, 443, 494
BaeGI GKGCMC 1 cut(s) 1025
BalI TGGCCA 2 cut(s) 872, 2088
BanI GGYRCC 4 cut(s) 230, 891, 1020, 1960
BanII GRGCYC 1 cut(s) 1584
BarI GAAGNNNNNNTAC 2 cut(s) 719, 751
BauI CACGAG 1 cut(s) 923
BbrPI CACGTG 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 401
BbvCI CCTCAGC 2 cut(s) 1160, 1620
BbvI GCAGC 5 cut(s) 278, 629, 1022, 1359, 2022
BccI CCATC 6 cut(s) 578, 1400, 1406, 1672, 1893, 2078
BceAI ACGGC 2 cut(s) 539, 1165
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciT130I CCWGG 3 cut(s) 889, 1585, 2025
BclI TGATCA 2 cut(s) 1599, 1804
BcnI CCSGG 3 cut(s) 164, 447, 1106
BcoDI GTCTC 5 cut(s) 10, 621, 782, 1146, 1898
BfaI CTAG 8 cut(s) 302, 374, 513, 702, 1031, 1121, 1854, 2147
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 2 cut(s) 430, 2036
BfuAI ACCTGC 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 1265
BisI GCNGC 7 cut(s) 267, 327, 618, 1011, 1362, 1373, 2036
BlsI GCNGC 7 cut(s) 268, 328, 619, 1012, 1363, 1374, 2037
Bme1390I CCNGG 6 cut(s) 164, 447, 889, 1106, 1585, 2025
Bme18I GGWCC 3 cut(s) 174, 443, 494
BmgT120I GGNCC 3 cut(s) 174, 443, 494
BmiI GGNNCC 9 cut(s) 126, 176, 232, 444, 495, 893, 1022, 1581, 1962
BmrFI CCNGG 6 cut(s) 164, 447, 889, 1106, 1585, 2025
BmrI ACTGGG 1 cut(s) 500
BmsI GCATC 4 cut(s) 172, 651, 673, 1945
BmuI ACTGGG 1 cut(s) 500
BpiI GAAGAC 1 cut(s) 401
BplI GAGNNNNNCTC 8 cut(s) 618, 650, 701, 733, 1220, 1252, 1289, 1321
Bpu10I CCTNAGC 2 cut(s) 1160, 1620
BpuEI CTTGAG 4 cut(s) 182, 588, 976, 2048
BpuMI CCSGG 3 cut(s) 164, 447, 1106
BsaAI YACGTR 2 cut(s) 121, 227
BsaI GGTCTC 2 cut(s) 10, 1146
BsaJI CCNNGG 6 cut(s) 318, 777, 1091, 1263, 1583, 2024
BsaWI WCCGGW 2 cut(s) 233, 366
BsaXI ACNNNNNCTCC 6 cut(s) 16, 46, 462, 492, 1407, 1437
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 333, 1048, 1589, 1590, 2110
Bse118I RCCGGY 3 cut(s) 1155, 1364, 2005
Bse1I ACTGG 2 cut(s) 495, 913
Bse3DI GCAATG 2 cut(s) 1071, 1275
BseBI CCWGG 3 cut(s) 889, 1585, 2025
BseDI CCNNGG 6 cut(s) 318, 777, 1091, 1263, 1583, 2024
BseLI CCNNNNNNNGG 6 cut(s) 50, 333, 1048, 1589, 1590, 2110
BseMI GCAATG 2 cut(s) 1071, 1275
BseMII CTCAG 8 cut(s) 1151, 1299, 1566, 1634, 1976, 1979, 2030, 2139
BseNI ACTGG 2 cut(s) 495, 913
BseRI GAGGAG 4 cut(s) 1027, 1201, 1592, 1687
BseSI GKGCMC 1 cut(s) 1025
BseX3I CGGCCG 1 cut(s) 1362
BseXI GCAGC 5 cut(s) 278, 629, 1022, 1359, 2022
Bsh1236I CGCG 1 cut(s) 1093
Bsh1285I CGRYCG 1 cut(s) 1365
BshFI GGCC 7 cut(s) 381, 872, 1052, 1259, 1364, 2088, 2098
BshNI GGYRCC 4 cut(s) 230, 891, 1020, 1960
BsiEI CGRYCG 1 cut(s) 1365
BslFI GGGAC 7 cut(s) 160, 456, 776, 854, 1131, 1537, 2003
BslI CCNNNNNNNGG 6 cut(s) 50, 333, 1048, 1589, 1590, 2110
BsmAI GTCTC 5 cut(s) 10, 621, 782, 1146, 1898
BsmBI CGTCTC 2 cut(s) 621, 782
BsmFI GGGAC 7 cut(s) 160, 456, 776, 854, 1131, 1537, 2003
BsmI GAATGC 3 cut(s) 697, 977, 2062
BsnI GGCC 7 cut(s) 381, 872, 1052, 1259, 1364, 2088, 2098
Bso31I GGTCTC 2 cut(s) 10, 1146
Bsp1286I GDGCHC 2 cut(s) 1025, 1584
Bsp19I CCATGG 1 cut(s) 777
BspACI CCGC 9 cut(s) 327, 500, 620, 785, 1091, 1093, 1361, 1379, 1958
BspANI GGCC 7 cut(s) 381, 872, 1052, 1259, 1364, 2088, 2098
BspCNI CTCAG 8 cut(s) 1152, 1300, 1567, 1633, 1977, 1978, 2031, 2138
BspFNI CGCG 1 cut(s) 1093
BspLI GGNNCC 9 cut(s) 126, 176, 232, 444, 495, 893, 1022, 1581, 1962
BspMAI CTGCAG 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 222
BspPI GGATC 4 cut(s) 428, 510, 808, 1647
BspT107I GGYRCC 4 cut(s) 230, 891, 1020, 1960
BspTNI GGTCTC 2 cut(s) 10, 1146
BsrDI GCAATG 2 cut(s) 1071, 1275
BsrFI RCCGGY 3 cut(s) 1155, 1364, 2005
BsrI ACTGG 2 cut(s) 495, 913
BssAI RCCGGY 3 cut(s) 1155, 1364, 2005
BssECI CCNNGG 6 cut(s) 318, 777, 1091, 1263, 1583, 2024
BssSI CACGAG 1 cut(s) 923
BssT1I CCWWGG 1 cut(s) 777
Bst2BI CACGAG 1 cut(s) 923
Bst2UI CCWGG 3 cut(s) 889, 1585, 2025
Bst4CI ACNGT 2 cut(s) 68, 2105
Bst6I CTCTTC 3 cut(s) 402, 1436, 1932
BstAPI GCANNNNNTGC 2 cut(s) 99, 1136
BstBAI YACGTR 2 cut(s) 121, 227
BstC8I GCNNGC 1 cut(s) 1517
BstDEI CTNAG 9 cut(s) 1160, 1308, 1575, 1620, 1649, 1965, 1985, 2039, 2125
BstDSI CCRYGG 3 cut(s) 777, 1091, 1263
BstENI CCTNNNNNAGG 1 cut(s) 1046
BstFNI CGCG 1 cut(s) 1093
BstH2I RGCGCY 2 cut(s) 430, 2036
BstHHI GCGC 3 cut(s) 429, 1372, 2035
BstMAI GTCTC 5 cut(s) 10, 621, 782, 1146, 1898
BstMCI CGRYCG 1 cut(s) 1365
BstMWI GCNNNNNNNGC 7 cut(s) 99, 323, 925, 1136, 1265, 1367, 1378
BstNI CCWGG 3 cut(s) 889, 1585, 2025
BstNSI RCATGY 1 cut(s) 1519
BstSCI CCNGG 6 cut(s) 162, 445, 887, 1104, 1583, 2023
BstSFI CTRYAG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 1025
BstUI CGCG 1 cut(s) 1093
BstV1I GCAGC 5 cut(s) 278, 629, 1022, 1359, 2022
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 1652
BstXI CCANNNNNNTGG 1 cut(s) 880
BstYI RGATCY 1 cut(s) 1652
BstZI CGGCCG 1 cut(s) 1362
BsuRI GGCC 7 cut(s) 381, 872, 1052, 1259, 1364, 2088, 2098
BtgI CCRYGG 3 cut(s) 777, 1091, 1263
BtgZI GCGATG 1 cut(s) 597
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 4 cut(s) 261, 1615, 1695, 1795
BveI ACCTGC 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 1517
CfoI GCGC 3 cut(s) 429, 1372, 2035
Cfr10I RCCGGY 3 cut(s) 1155, 1364, 2005
Cfr13I GGNCC 3 cut(s) 174, 443, 494
Cfr42I CCGCGG 1 cut(s) 1094
Csp6I GTAC 3 cut(s) 224, 892, 1102
CviAII CATG 8 cut(s) 778, 868, 967, 1382, 1516, 1520, 1795, 2110
CviQI GTAC 3 cut(s) 224, 892, 1102
DdeI CTNAG 9 cut(s) 1160, 1308, 1575, 1620, 1649, 1965, 1985, 2039, 2125
EaeI YGGCCR 3 cut(s) 870, 1362, 2086
EagI CGGCCG 1 cut(s) 1362
Eam1104I CTCTTC 3 cut(s) 402, 1436, 1932
EarI CTCTTC 3 cut(s) 402, 1436, 1932
EciI GGCGGA 1 cut(s) 515
EclXI CGGCCG 1 cut(s) 1362
Eco130I CCWWGG 1 cut(s) 777
Eco24I GRGCYC 1 cut(s) 1584
Eco31I GGTCTC 2 cut(s) 10, 1146
Eco32I GATATC 1 cut(s) 933
Eco47I GGWCC 3 cut(s) 174, 443, 494
Eco47III AGCGCT 2 cut(s) 428, 2034
Eco52I CGGCCG 1 cut(s) 1362
Eco72I CACGTG 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 1046
EcoRII CCWGG 3 cut(s) 887, 1583, 2023
EcoRV GATATC 1 cut(s) 933
EcoT14I CCWWGG 1 cut(s) 777
EcoT22I ATGCAT 2 cut(s) 666, 1521
EcoT38I GRGCYC 1 cut(s) 1584
ErhI CCWWGG 1 cut(s) 777
Esp3I CGTCTC 2 cut(s) 621, 782
FaeI CATG 8 cut(s) 781, 871, 970, 1385, 1519, 1523, 1798, 2113
FalI AAGNNNNNCTT 4 cut(s) 1472, 1504, 2057, 2089
FaqI GGGAC 7 cut(s) 160, 456, 776, 854, 1131, 1537, 2003
FatI CATG 8 cut(s) 777, 867, 966, 1381, 1515, 1519, 1794, 2109
FauI CCCGC 2 cut(s) 1086, 1098
FbaI TGATCA 2 cut(s) 1599, 1804
Fnu4HI GCNGC 7 cut(s) 267, 327, 618, 1011, 1362, 1373, 2036
FriOI GRGCYC 1 cut(s) 1584
Fsp4HI GCNGC 7 cut(s) 267, 327, 618, 1011, 1362, 1373, 2036
FspBI CTAG 8 cut(s) 302, 374, 513, 702, 1031, 1121, 1854, 2147
GlaI GCGC 3 cut(s) 428, 1371, 2034
GluI GCNGC 7 cut(s) 267, 327, 618, 1011, 1362, 1373, 2036
HaeII RGCGCY 2 cut(s) 430, 2036
HaeIII GGCC 7 cut(s) 381, 872, 1052, 1259, 1364, 2088, 2098
HhaI GCGC 3 cut(s) 429, 1372, 2035
Hin1II CATG 8 cut(s) 781, 871, 970, 1385, 1519, 1523, 1798, 2113
Hin6I GCGC 3 cut(s) 427, 1370, 2033
HinP1I GCGC 3 cut(s) 427, 1370, 2033
HinfI GANTC 9 cut(s) 370, 716, 902, 1034, 1304, 1525, 1633, 1981, 1991
HphI GGTGA 4 cut(s) 76, 1609, 1930, 1964
Hpy166II GTNNAC 2 cut(s) 224, 457
Hpy188I TCNGA 9 cut(s) 721, 818, 937, 964, 1309, 1722, 1864, 1968, 1986
Hpy188III TCNNGA 8 cut(s) 128, 374, 605, 688, 923, 1400, 1509, 2065
Hpy8I GTNNAC 2 cut(s) 224, 457
HpyCH4III ACNGT 2 cut(s) 68, 2105
HpyCH4IV ACGT 2 cut(s) 120, 226
HpyCH4V TGCA 5 cut(s) 210, 266, 664, 1519, 2060
HpyF10VI GCNNNNNNNGC 7 cut(s) 99, 323, 925, 1136, 1265, 1367, 1378
HpyF3I CTNAG 9 cut(s) 1160, 1308, 1575, 1620, 1649, 1965, 1985, 2039, 2125
HpySE526I ACGT 2 cut(s) 120, 226
Hsp92II CATG 8 cut(s) 781, 871, 970, 1385, 1519, 1523, 1798, 2113
HspAI GCGC 3 cut(s) 427, 1370, 2033
KpnI GGTACC 1 cut(s) 895
Ksp22I TGATCA 2 cut(s) 1599, 1804
KspI CCGCGG 1 cut(s) 1094
LmnI GCTCC 4 cut(s) 165, 483, 1579, 1759
Lsp1109I GCAGC 5 cut(s) 278, 629, 1022, 1359, 2022
LweI GCATC 4 cut(s) 172, 651, 673, 1945
MaeI CTAG 8 cut(s) 302, 374, 513, 702, 1031, 1121, 1854, 2147
MaeII ACGT 2 cut(s) 120, 226
MaeIII GTNAC 3 cut(s) 468, 641, 1790
MboII GAAGA 8 cut(s) 406, 419, 991, 1352, 1415, 1453, 1492, 1949
MflI RGATCY 1 cut(s) 1652
MhlI GDGCHC 2 cut(s) 1025, 1584
MlsI TGGCCA 2 cut(s) 872, 2088
MluNI TGGCCA 2 cut(s) 872, 2088
MlyI GAGTC 6 cut(s) 710, 896, 1028, 1298, 1519, 1985
Mox20I TGGCCA 2 cut(s) 872, 2088
Mph1103I ATGCAT 2 cut(s) 666, 1521
MroXI GAANNNNTTC 1 cut(s) 1085
MscI TGGCCA 2 cut(s) 872, 2088
MseI TTAA 4 cut(s) 464, 522, 1317, 2161
Msp20I TGGCCA 2 cut(s) 872, 2088
MspA1I CMGCKG 2 cut(s) 620, 1093
MspR9I CCNGG 6 cut(s) 164, 447, 889, 1106, 1585, 2025
Mva1269I GAATGC 3 cut(s) 697, 977, 2062
MvaI CCWGG 3 cut(s) 889, 1585, 2025
MvnI CGCG 1 cut(s) 1093
MwoI GCNNNNNNNGC 7 cut(s) 99, 323, 925, 1136, 1265, 1367, 1378
NciI CCSGG 3 cut(s) 164, 447, 1106
NcoI CCATGG 1 cut(s) 777
NlaIII CATG 8 cut(s) 781, 871, 970, 1385, 1519, 1523, 1798, 2113
NlaIV GGNNCC 9 cut(s) 126, 176, 232, 444, 495, 893, 1022, 1581, 1962
NmeAIII GCCGAG 2 cut(s) 558, 1453
NmuCI GTSAC 3 cut(s) 468, 641, 1790
NsiI ATGCAT 2 cut(s) 666, 1521
NspI RCATGY 1 cut(s) 1519
PaeI GCATGC 1 cut(s) 1519
PctI GAATGC 3 cut(s) 697, 977, 2062
PdmI GAANNNNTTC 1 cut(s) 1085
PfeI GAWTC 3 cut(s) 370, 1633, 1981
PkrI GCNGC 7 cut(s) 268, 328, 619, 1012, 1363, 1374, 2037
PleI GAGTC 6 cut(s) 710, 896, 1028, 1298, 1519, 1985
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
PpsI GAGTC 6 cut(s) 710, 896, 1028, 1298, 1519, 1985
Ppu21I YACGTR 2 cut(s) 121, 227
Psp6I CCWGG 3 cut(s) 887, 1583, 2023
PspCI CACGTG 1 cut(s) 121
PspGI CCWGG 3 cut(s) 887, 1583, 2023
PspN4I GGNNCC 9 cut(s) 126, 176, 232, 444, 495, 893, 1022, 1581, 1962
PspPI GGNCC 3 cut(s) 174, 443, 494
PstI CTGCAG 1 cut(s) 268
PsuI RGATCY 1 cut(s) 1652
RsaI GTAC 3 cut(s) 225, 893, 1103
RsaNI GTAC 3 cut(s) 224, 892, 1102
SacII CCGCGG 1 cut(s) 1094
SaqAI TTAA 4 cut(s) 464, 522, 1317, 2161
SatI GCNGC 7 cut(s) 267, 327, 618, 1011, 1362, 1373, 2036
Sau96I GGNCC 3 cut(s) 174, 443, 494
SchI GAGTC 6 cut(s) 710, 896, 1028, 1298, 1519, 1985
ScrFI CCNGG 6 cut(s) 164, 447, 889, 1106, 1585, 2025
SduI GDGCHC 2 cut(s) 1025, 1584
SfaNI GCATC 4 cut(s) 172, 651, 673, 1945
SfcI CTRYAG 1 cut(s) 264
Sfr303I CCGCGG 1 cut(s) 1094
SgrAI CRCCGGYG 1 cut(s) 2005
SgrBI CCGCGG 1 cut(s) 1094
SinI GGWCC 3 cut(s) 174, 443, 494
SmlI CTYRAG 4 cut(s) 197, 603, 955, 2063
SmoI CTYRAG 4 cut(s) 197, 603, 955, 2063
SphI GCATGC 1 cut(s) 1519
SsiI CCGC 9 cut(s) 327, 500, 620, 785, 1091, 1093, 1361, 1379, 1958
SspI AATATT 1 cut(s) 146
SspMI CTAG 8 cut(s) 302, 374, 513, 702, 1031, 1121, 1854, 2147
StyD4I CCNGG 6 cut(s) 162, 445, 887, 1104, 1583, 2023
StyI CCWWGG 1 cut(s) 777
TaaI ACNGT 2 cut(s) 68, 2105
TaiI ACGT 2 cut(s) 123, 229
TaqI TCGA 1 cut(s) 1994
TaqII GACCGA 1 cut(s) 74
TauI GCSGC 2 cut(s) 329, 1364
TfiI GAWTC 3 cut(s) 370, 1633, 1981
Tru1I TTAA 4 cut(s) 464, 522, 1317, 2161
Tru9I TTAA 4 cut(s) 464, 522, 1317, 2161
TscAI CASTG 4 cut(s) 268, 1615, 1702, 1795
TseFI GTSAC 3 cut(s) 468, 641, 1790
TseI GCWGC 5 cut(s) 266, 617, 1010, 1372, 2035
Tsp45I GTSAC 3 cut(s) 468, 641, 1790
TspDTI ATGAA 6 cut(s) 557, 867, 1286, 1493, 1616, 1706
TspGWI ACGGA 2 cut(s) 806, 1252
TspRI CASTG 4 cut(s) 268, 1615, 1702, 1795
VpaK11BI GGWCC 3 cut(s) 174, 443, 494
XagI CCTNNNNNAGG 1 cut(s) 1046
XapI RAATTY 3 cut(s) 744, 1289, 1664
XbaI TCTAGA 1 cut(s) 373
XceI RCATGY 1 cut(s) 1519
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 1085
XspI CTAG 8 cut(s) 302, 374, 513, 702, 1031, 1121, 1854, 2147
Zsp2I ATGCAT 2 cut(s) 666, 1521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.