Prupe.5G219000_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000255
Physical Location & Seq
Reverse (-)
17110009 .. 17112018
2010 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G219000.1

Sequence Viewer

Length: 1923 bp
ATGGCTCCTCCACCAACTGGTCTTGTAATTCTTGGTCCTCCAGAGATCAACAAGCCCACCCCAACACCGCAACCCGAACCCGCCTTCGGTGATTCGATGAGCGGATCAAACAGAGCCAGACCCCCAATGGGCCTCACCGAGAACGGCTCAGCCACCTTCCTCACCTCCTCAAACCCCTGCCTCGATATGATCTTCCACGTCGTCCCGGACTCTCCGGCCTCCTATCTCAACAAACAGCTCCCGCTGGCCTGGGCCCACGACTCCCTCACCACTCTCAAACTCATCTGCAACCTCAGAGGCGTCCGTGGCGCAGGAAAGTCCGACAAGGAAAGCTTCTACACGGCGGCATTTTGGCTCCACAAAAACCACCCCAAAACCCTCGCCTGCAACCTCGCCTCTTTCGCCGAGTTCGGCTACTTCAAAGACATGCGCGAGATTCTGTACCGCCTTCTAGAAGGCCAAGACGTGAGGAAGAACCAAAAGGACCAGTGGTCAATGAGAAAACGCCGATGGGGCGGTAGCAAGAGGAGACCAGTGGTTCGGCGAGTGGCACGGAGACGTCGTCCGAGTTATAAAATTGGTAAATCGAAAACCAAAGCGGTGGTCACTCCGGCCATCAGCAGCCGGAAGAGTGTGCCTAAAGAGGTTCGGGTAATGAAGGGGATGGAGAGGGTAAAATTGGAAAAGGAAACAGCGAGCTCTGCGAGGAAAGAAAAGAAGATAGCCATGGCCAAGAAGGCCATTGCCAGGTACCAGCGTGACCCGGATTACCGGTTCTTGCACCAGAGGGTTTCGGATCTTTTCGCAGAGTGCTTGAAGTCCGATGTAGAAAAATTCAAGTCGGATGATAAGCATAAGAAGATGACTCTGGCTGCCAAGTGGTGCCCTTCCCTTGACTCCTCCTTCGACCGCGCCACTTTGCTCTGCGAAGCCATTGCGAGGAAGGTGTTTCCCCGAGAATCGTACCAGGAATATGAAGGTATGGAGGAAGCACATTACGCCTACAGAGTCAGAGACCGGCTGAGGAAGGAGGTGTTGGTGCCGCTGAGGAAGGAGTTGCAGTTGCCCGAGGTTTACATGGGTGCCAACCAATGGGGTGCTATTCCGTACAATCGAGTGGCCTCTGTGGCCATGAAGCTTTACAAAAGTAAGTTTTTGGAGCACGACAATGAGAGGTTTAGCAAGTATTTGGAGGACGTGAAAGCCGGCAAGTCCACAATTGCGGCGGACCAGAATGACGATGACAAGGAAGATCAAGTGGCCTTGCTTCAGTGGAAGAAAATGGTGGATGACATGCTAAAGGAAGGGAAGCTGAAGAATAGCTTGGCTGTATGTGACGTCTCGGACAGCATGGCTGGAACCCCAATGGAGGTGTCTTTGGCTTTGGGATTGTTGGTATCCGAACTGACTGAAGAGCCATGGAAGGGAAAGGTCATCACTTTCAGTGGAAACGCTCGGCTGCATTTGATTGAAGGGGATGACCTTAGTTCCAAGTGTGAATTTGTGAGGAGGATGGATTGGGGCATGAACACTGATTTTCAAAAGGTGTTTGATTTGCTTCCCCAAGTGGCCGTGAATGGGAATTTGAAGCCAGAGCATATGATCAAGAGGATCTTCGTGTTCAGCGACATGGAGTTCGATGAGGCTTCGAGTAATAGTTGGGAGACTGATTATGAGGTAATACAGAGGAAGTATAAGGAGAAAGGGTACAAGAATGCAGTGCCACAGATCGTGTTTTGGAATCTGAGGCATTCTATGTCTACGCCATTGCCGAGCACAGAACCAGGGGTGGCGCTGTTGAGTGGCTTCTCCAAGAATTTGATGACGATATTCTTGGATGGGGATGGGGACATTCGCCCGGATCTTACCATGGAAGCAGCCATCTCCGGCGAAAAGTATCAGAAGCTGGTTGTGATAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

641

Amino Acids

72.84

Weight (kDa)

9.31

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
AatII GACGTC 2 cut(s) 562, 1341
Acc65I GGTACC 1 cut(s) 750
AccB1I GGYRCC 4 cut(s) 750, 882, 1039, 1082
AccB7I CCANNNNNTGG 2 cut(s) 17, 1092
AccBSI CCGCTC 1 cut(s) 102
AccI GTMKAC 1 cut(s) 1760
AccII CGCG 2 cut(s) 432, 912
AclWI GGATC 4 cut(s) 112, 804, 1619, 1869
AcoI YGGCCR 4 cut(s) 612, 729, 1128, 1569
AcsI RAATTY 4 cut(s) 833, 1499, 1582, 1816
AcuI CTGAAG 3 cut(s) 1253, 1334, 1431
AcyI GRCGYC 3 cut(s) 300, 559, 1338
AfaI GTAC 5 cut(s) 443, 752, 965, 1109, 1709
AfiI CCNNNNNNNGG 9 cut(s) 17, 86, 128, 747, 939, 1092, 1369, 1424, 1578
AgeI ACCGGT 1 cut(s) 771
AgsI TTSAA 6 cut(s) 421, 817, 838, 1472, 1541, 1588
AhdI GACNNNNNGTC 1 cut(s) 490
AjiI CACGTC 3 cut(s) 199, 466, 1198
AjnI CCWGG 4 cut(s) 248, 746, 966, 1783
AjuI GAANNNNNNNTTGG 4 cut(s) 1019, 1051, 1307, 1339
AloI GAACNNNNNNTCC 2 cut(s) 758, 790
AluBI AGCT 7 cut(s) 238, 333, 699, 1138, 1312, 1323, 1906
AluI AGCT 7 cut(s) 238, 333, 699, 1138, 1312, 1323, 1906
Alw21I GWGCWC 3 cut(s) 701, 1164, 1778
Alw26I GTCTC 5 cut(s) 523, 550, 1008, 1345, 1658
AlwI GGATC 4 cut(s) 112, 804, 1619, 1869
AlwNI CAGNNNCTG 1 cut(s) 1906
Ama87I CYCGRG 2 cut(s) 954, 1067
ApaI GGGCCC 1 cut(s) 256
ApeKI GCWGC 4 cut(s) 621, 872, 1459, 1877
ApoI RAATTY 4 cut(s) 833, 1499, 1582, 1816
ArsI GACNNNNNNTTYG 8 cut(s) 522, 554, 588, 620, 887, 919, 1619, 1651
AsiGI ACCGGT 1 cut(s) 771
Asp718I GGTACC 1 cut(s) 750
AspLEI GCGC 4 cut(s) 311, 432, 914, 1795
AspS9I GGNCC 6 cut(s) 35, 130, 252, 253, 484, 1228
AsuC2I CCSGG 3 cut(s) 206, 764, 1859
AsuHPI GGTGA 4 cut(s) 101, 127, 154, 259
AvaI CYCGRG 2 cut(s) 954, 1067
AvaII GGWCC 3 cut(s) 35, 484, 1228
BaeGI GKGCMC 2 cut(s) 256, 887
BaeI ACNNNNGTAYC 2 cut(s) 742, 775
BalI TGGCCA 2 cut(s) 731, 1130
BanI GGYRCC 4 cut(s) 750, 882, 1039, 1082
BanII GRGCYC 2 cut(s) 256, 701
Bbv12I GWGCWC 3 cut(s) 701, 1164, 1778
BbvCI CCTCAGC 2 cut(s) 1022, 1046
BbvI GCAGC 4 cut(s) 633, 859, 1446, 1889
BccI CCATC 7 cut(s) 504, 623, 658, 1507, 1832, 1838, 1889
BceAI ACGGC 3 cut(s) 160, 357, 1556
BcgI CGANNNNNNTGC 2 cut(s) 917, 951
BciT130I CCWGG 4 cut(s) 250, 748, 968, 1785
BciVI GTATCC 1 cut(s) 1408
BclI TGATCA 1 cut(s) 1602
BcnI CCSGG 3 cut(s) 206, 764, 1859
BcoDI GTCTC 5 cut(s) 523, 550, 1008, 1345, 1658
BfaI CTAG 1 cut(s) 452
BfmI CTRYAG 1 cut(s) 1003
BfoI RGCGCY 1 cut(s) 1796
BfuI GTATCC 1 cut(s) 1408
BglI GCCNNNNNGGC 3 cut(s) 513, 737, 1127
BisI GCNGC 7 cut(s) 345, 622, 873, 1043, 1224, 1460, 1878
BlpI GCTNAGC 1 cut(s) 148
BlsI GCNGC 7 cut(s) 346, 623, 874, 1044, 1225, 1461, 1879
Bme1390I CCNGG 7 cut(s) 206, 250, 748, 764, 968, 1785, 1859
Bme18I GGWCC 3 cut(s) 35, 484, 1228
BmeRI GACNNNNNGTC 1 cut(s) 490
BmeT110I CYCGRG 2 cut(s) 954, 1067
BmgBI CACGTC 3 cut(s) 199, 466, 1198
BmgT120I GGNCC 6 cut(s) 35, 130, 252, 253, 484, 1228
BmiI GGNNCC 8 cut(s) 6, 254, 356, 752, 884, 1041, 1084, 1360
BmrFI CCNGG 7 cut(s) 206, 250, 748, 764, 968, 1785, 1859
BplI GAGNNNNNCTC 2 cut(s) 131, 163
BpmI CTGGAG 1 cut(s) 24
Bpu10I CCTNAGC 2 cut(s) 1022, 1046
Bpu1102I GCTNAGC 1 cut(s) 148
BpuMI CCSGG 3 cut(s) 206, 764, 1859
BsaHI GRCGYC 3 cut(s) 300, 559, 1338
BsaI GGTCTC 2 cut(s) 523, 1008
BsaJI CCNNGG 7 cut(s) 249, 304, 726, 1068, 1418, 1784, 1869
BsaWI WCCGGW 1 cut(s) 771
BsaXI ACNNNNNCTCC 6 cut(s) 547, 577, 1046, 1076, 1691, 1721
Bsc4I CCNNNNNNNGG 9 cut(s) 17, 86, 128, 747, 939, 1092, 1369, 1424, 1578
Bse118I RCCGGY 3 cut(s) 771, 1017, 1205
Bse1I ACTGG 3 cut(s) 22, 487, 533
Bse3DI GCAATG 3 cut(s) 741, 933, 1766
BseBI CCWGG 4 cut(s) 250, 748, 968, 1785
BseDI CCNNGG 7 cut(s) 249, 304, 726, 1068, 1418, 1784, 1869
BseGI GGATG 7 cut(s) 669, 850, 1294, 1483, 1518, 1843, 1849
BseLI CCNNNNNNNGG 9 cut(s) 17, 86, 128, 747, 939, 1092, 1369, 1424, 1578
BseMI GCAATG 3 cut(s) 741, 933, 1766
BseMII CTCAG 5 cut(s) 162, 307, 1013, 1037, 1736
BseNI ACTGG 3 cut(s) 22, 487, 533
BseRI GAGGAG 4 cut(s) 157, 541, 889, 1522
BseSI GKGCMC 2 cut(s) 256, 887
BseXI GCAGC 4 cut(s) 633, 859, 1446, 1889
Bsh1236I CGCG 2 cut(s) 432, 912
Bsh1285I CGRYCG 1 cut(s) 910
BshNI GGYRCC 4 cut(s) 750, 882, 1039, 1082
BshTI ACCGGT 1 cut(s) 771
BsiEI CGRYCG 1 cut(s) 910
BsiHKAI GWGCWC 3 cut(s) 701, 1164, 1778
BsiHKCI CYCGRG 2 cut(s) 954, 1067
BslFI GGGAC 2 cut(s) 188, 1862
BslI CCNNNNNNNGG 9 cut(s) 17, 86, 128, 747, 939, 1092, 1369, 1424, 1578
BsmAI GTCTC 5 cut(s) 523, 550, 1008, 1345, 1658
BsmBI CGTCTC 2 cut(s) 550, 1345
BsmFI GGGAC 2 cut(s) 188, 1862
BsmI GAATGC 2 cut(s) 1720, 1750
Bso31I GGTCTC 2 cut(s) 523, 1008
BsoBI CYCGRG 2 cut(s) 954, 1067
Bsp120I GGGCCC 1 cut(s) 252
Bsp1286I GDGCHC 5 cut(s) 256, 701, 887, 1164, 1778
Bsp143I GATC 9 cut(s) 45, 104, 189, 796, 1252, 1602, 1611, 1728, 1861
Bsp1720I GCTNAGC 1 cut(s) 148
Bsp19I CCATGG 3 cut(s) 726, 1418, 1869
BspCNI CTCAG 5 cut(s) 161, 306, 1014, 1038, 1737
BspFNI CGCG 2 cut(s) 432, 912
BspLI GGNNCC 8 cut(s) 6, 254, 356, 752, 884, 1041, 1084, 1360
BspPI GGATC 4 cut(s) 112, 804, 1619, 1869
BspQI GCTCTTC 1 cut(s) 1407
BspT107I GGYRCC 4 cut(s) 750, 882, 1039, 1082
BspTNI GGTCTC 2 cut(s) 523, 1008
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 3 cut(s) 741, 933, 1766
BsrFI RCCGGY 3 cut(s) 771, 1017, 1205
BsrI ACTGG 3 cut(s) 22, 487, 533
BssAI RCCGGY 3 cut(s) 771, 1017, 1205
BssECI CCNNGG 7 cut(s) 249, 304, 726, 1068, 1418, 1784, 1869
BssMI GATC 9 cut(s) 45, 104, 189, 796, 1252, 1602, 1611, 1728, 1861
BssNI GRCGYC 3 cut(s) 300, 559, 1338
BssT1I CCWWGG 3 cut(s) 726, 1418, 1869
Bst2UI CCWGG 4 cut(s) 250, 748, 968, 1785
Bst6I CTCTTC 2 cut(s) 623, 1407
BstACI GRCGYC 3 cut(s) 300, 559, 1338
BstC8I GCNNGC 4 cut(s) 246, 385, 697, 1207
BstDEI CTNAG 6 cut(s) 148, 293, 1022, 1046, 1484, 1745
BstDSI CCRYGG 4 cut(s) 304, 726, 1418, 1869
BstF5I GGATG 7 cut(s) 669, 850, 1294, 1483, 1518, 1843, 1849
BstFNI CGCG 2 cut(s) 432, 912
BstH2I RGCGCY 1 cut(s) 1796
BstHHI GCGC 4 cut(s) 311, 432, 914, 1795
BstKTI GATC 9 cut(s) 48, 107, 192, 799, 1255, 1605, 1614, 1731, 1864
BstMAI GTCTC 5 cut(s) 523, 550, 1008, 1345, 1658
BstMBI GATC 9 cut(s) 45, 104, 189, 796, 1252, 1602, 1611, 1728, 1861
BstMCI CGRYCG 1 cut(s) 910
BstMWI GCNNNNNNNGC 7 cut(s) 306, 401, 513, 701, 737, 998, 1127
BstNI CCWGG 4 cut(s) 250, 748, 968, 1785
BstNSI RCATGY 2 cut(s) 430, 1297
BstSCI CCNGG 7 cut(s) 204, 248, 746, 762, 966, 1783, 1857
BstSFI CTRYAG 1 cut(s) 1003
BstSLI GKGCMC 2 cut(s) 256, 887
BstUI CGCG 2 cut(s) 432, 912
BstV1I GCAGC 4 cut(s) 633, 859, 1446, 1889
BstX2I RGATCY 3 cut(s) 796, 1611, 1861
BstXI CCANNNNNNTGG 1 cut(s) 601
BstYI RGATCY 3 cut(s) 796, 1611, 1861
BsuI GTATCC 1 cut(s) 1408
BtgI CCRYGG 4 cut(s) 304, 726, 1418, 1869
BtrI CACGTC 3 cut(s) 199, 466, 1198
BtsCI GGATG 7 cut(s) 669, 850, 1294, 1483, 1518, 1843, 1849
BtsI GCAGTG 1 cut(s) 1725
BtsIMutI CAGTG 6 cut(s) 494, 540, 1277, 1450, 1530, 1725
Cac8I GCNNGC 4 cut(s) 246, 385, 697, 1207
CaiI CAGNNNCTG 1 cut(s) 1906
CfoI GCGC 4 cut(s) 311, 432, 914, 1795
Cfr10I RCCGGY 3 cut(s) 771, 1017, 1205
Cfr13I GGNCC 6 cut(s) 35, 130, 252, 253, 484, 1228
CseI GACGC 1 cut(s) 289
Csp6I GTAC 5 cut(s) 442, 751, 964, 1108, 1708
CspAI ACCGGT 1 cut(s) 771
CviQI GTAC 5 cut(s) 442, 751, 964, 1108, 1708
DdeI CTNAG 6 cut(s) 148, 293, 1022, 1046, 1484, 1745
DpnI GATC 9 cut(s) 47, 106, 191, 798, 1254, 1604, 1613, 1730, 1863
DpnII GATC 9 cut(s) 45, 104, 189, 796, 1252, 1602, 1611, 1728, 1861
DriI GACNNNNNGTC 1 cut(s) 490
EaeI YGGCCR 4 cut(s) 612, 729, 1128, 1569
Eam1104I CTCTTC 2 cut(s) 623, 1407
Eam1105I GACNNNNNGTC 1 cut(s) 490
EarI CTCTTC 2 cut(s) 623, 1407
EciI GGCGGA 1 cut(s) 1241
Ecl136II GAGCTC 1 cut(s) 699
Eco130I CCWWGG 3 cut(s) 726, 1418, 1869
Eco24I GRGCYC 2 cut(s) 256, 701
Eco31I GGTCTC 2 cut(s) 523, 1008
Eco47I GGWCC 3 cut(s) 35, 484, 1228
Eco53kI GAGCTC 1 cut(s) 699
Eco57I CTGAAG 3 cut(s) 1253, 1334, 1431
Eco88I CYCGRG 2 cut(s) 954, 1067
EcoICRI GAGCTC 1 cut(s) 699
EcoRII CCWGG 4 cut(s) 248, 746, 966, 1783
EcoT14I CCWWGG 3 cut(s) 726, 1418, 1869
EcoT38I GRGCYC 2 cut(s) 256, 701
ErhI CCWWGG 3 cut(s) 726, 1418, 1869
Esp3I CGTCTC 2 cut(s) 550, 1345
FalI AAGNNNNNCTT 6 cut(s) 317, 349, 1307, 1339, 1598, 1630
FaqI GGGAC 2 cut(s) 188, 1862
FauI CCCGC 2 cut(s) 88, 249
FauNDI CATATG 1 cut(s) 1599
FbaI TGATCA 1 cut(s) 1602
FblI GTMKAC 1 cut(s) 1760
Fnu4HI GCNGC 7 cut(s) 345, 622, 873, 1043, 1224, 1460, 1878
FokI GGATG 7 cut(s) 676, 857, 1301, 1490, 1525, 1850, 1856
FriOI GRGCYC 2 cut(s) 256, 701
Fsp4HI GCNGC 7 cut(s) 345, 622, 873, 1043, 1224, 1460, 1878
FspBI CTAG 1 cut(s) 452
GlaI GCGC 4 cut(s) 310, 431, 913, 1794
GluI GCNGC 7 cut(s) 345, 622, 873, 1043, 1224, 1460, 1878
GsuI CTGGAG 1 cut(s) 24
HaeII RGCGCY 1 cut(s) 1796
HgaI GACGC 1 cut(s) 289
HhaI GCGC 4 cut(s) 311, 432, 914, 1795
Hin1I GRCGYC 3 cut(s) 300, 559, 1338
Hin6I GCGC 4 cut(s) 309, 430, 912, 1793
HinP1I GCGC 4 cut(s) 309, 430, 912, 1793
HindIII AAGCTT 2 cut(s) 331, 1136
HinfI GANTC 9 cut(s) 92, 209, 260, 436, 865, 896, 959, 1008, 1741
HphI GGTGA 4 cut(s) 101, 127, 154, 259
Hpy166II GTNNAC 3 cut(s) 1075, 1215, 1761
Hpy188III TCNNGA 3 cut(s) 41, 452, 1606
Hpy8I GTNNAC 3 cut(s) 1075, 1215, 1761
Hpy99I CGWCG 2 cut(s) 203, 564
HpyCH4IV ACGT 5 cut(s) 198, 465, 559, 1197, 1338
HpyCH4V TGCA 6 cut(s) 288, 387, 781, 1060, 1462, 1718
HpyF10VI GCNNNNNNNGC 7 cut(s) 306, 401, 513, 701, 737, 998, 1127
HpyF3I CTNAG 6 cut(s) 148, 293, 1022, 1046, 1484, 1745
HpySE526I ACGT 5 cut(s) 198, 465, 559, 1197, 1338
Hsp92I GRCGYC 3 cut(s) 300, 559, 1338
HspAI GCGC 4 cut(s) 309, 430, 912, 1793
KpnI GGTACC 1 cut(s) 754
KroI GCCGGC 1 cut(s) 1205
KroNI GCCGGC 1 cut(s) 1207
Ksp22I TGATCA 1 cut(s) 1602
Kzo9I GATC 9 cut(s) 45, 104, 189, 796, 1252, 1602, 1611, 1728, 1861
LguI GCTCTTC 1 cut(s) 1407
LmnI GCTCC 4 cut(s) 10, 243, 360, 1159
Lsp1109I GCAGC 4 cut(s) 633, 859, 1446, 1889
MaeI CTAG 1 cut(s) 452
MaeII ACGT 5 cut(s) 198, 465, 559, 1197, 1338
MaeIII GTNAC 3 cut(s) 604, 758, 1334
MalI GATC 9 cut(s) 47, 106, 191, 798, 1254, 1604, 1613, 1730, 1863
MbiI CCGCTC 1 cut(s) 102
MboI GATC 9 cut(s) 45, 104, 189, 796, 1252, 1602, 1611, 1728, 1861
MfeI CAATTG 1 cut(s) 1218
MflI RGATCY 3 cut(s) 796, 1611, 1861
MhlI GDGCHC 5 cut(s) 256, 701, 887, 1164, 1778
MlsI TGGCCA 2 cut(s) 731, 1130
MluCI AATT 8 cut(s) 27, 576, 677, 833, 1218, 1499, 1582, 1816
MluNI TGGCCA 2 cut(s) 731, 1130
MlyI GAGTC 5 cut(s) 203, 254, 859, 890, 1017
MmeI TCCRAC 2 cut(s) 345, 822
Mox20I TGGCCA 2 cut(s) 731, 1130
MroNI GCCGGC 1 cut(s) 1205
MscI TGGCCA 2 cut(s) 731, 1130
MslI CAYNNNNRTG 1 cut(s) 1167
Msp20I TGGCCA 2 cut(s) 731, 1130
MspA1I CMGCKG 2 cut(s) 244, 1045
MspR9I CCNGG 7 cut(s) 206, 250, 748, 764, 968, 1785, 1859
MunI CAATTG 1 cut(s) 1218
Mva1269I GAATGC 2 cut(s) 1720, 1750
MvaI CCWGG 4 cut(s) 250, 748, 968, 1785
MvnI CGCG 2 cut(s) 432, 912
MwoI GCNNNNNNNGC 7 cut(s) 306, 401, 513, 701, 737, 998, 1127
NaeI GCCGGC 1 cut(s) 1207
NciI CCSGG 3 cut(s) 206, 764, 1859
NcoI CCATGG 3 cut(s) 726, 1418, 1869
NdeI CATATG 1 cut(s) 1599
NdeII GATC 9 cut(s) 45, 104, 189, 796, 1252, 1602, 1611, 1728, 1861
NgoMIV GCCGGC 1 cut(s) 1205
NlaIV GGNNCC 8 cut(s) 6, 254, 356, 752, 884, 1041, 1084, 1360
NmeAIII GCCGAG 3 cut(s) 430, 1435, 1797
NmuCI GTSAC 3 cut(s) 604, 758, 1334
NspI RCATGY 2 cut(s) 430, 1297
PciSI GCTCTTC 1 cut(s) 1407
PcsI WCGNNNNNNNCGW 3 cut(s) 559, 1623, 1769
PctI GAATGC 2 cut(s) 1720, 1750
PdiI GCCGGC 1 cut(s) 1207
PfeI GAWTC 4 cut(s) 92, 436, 959, 1741
PflFI GACNNNGTC 1 cut(s) 561
PflMI CCANNNNNTGG 2 cut(s) 17, 1092
PfoI TCCNGGA 1 cut(s) 204
PinAI ACCGGT 1 cut(s) 771
PkrI GCNGC 7 cut(s) 346, 623, 874, 1044, 1225, 1461, 1879
PleI GAGTC 5 cut(s) 203, 254, 859, 890, 1016
PpsI GAGTC 5 cut(s) 203, 254, 859, 890, 1016
PsiI TTATAA 1 cut(s) 573
Psp124BI GAGCTC 1 cut(s) 701
Psp6I CCWGG 4 cut(s) 248, 746, 966, 1783
PspGI CCWGG 4 cut(s) 248, 746, 966, 1783
PspN4I GGNNCC 8 cut(s) 6, 254, 356, 752, 884, 1041, 1084, 1360
PspOMI GGGCCC 1 cut(s) 252
PspPI GGNCC 6 cut(s) 35, 130, 252, 253, 484, 1228
PstNI CAGNNNCTG 1 cut(s) 1906
PsuI RGATCY 3 cut(s) 796, 1611, 1861
PsyI GACNNNGTC 1 cut(s) 561
RsaI GTAC 5 cut(s) 443, 752, 965, 1109, 1709
RsaNI GTAC 5 cut(s) 442, 751, 964, 1108, 1708
RseI CAYNNNNRTG 1 cut(s) 1167
SacI GAGCTC 1 cut(s) 701
SapI GCTCTTC 1 cut(s) 1407
SatI GCNGC 7 cut(s) 345, 622, 873, 1043, 1224, 1460, 1878
Sau3AI GATC 9 cut(s) 45, 104, 189, 796, 1252, 1602, 1611, 1728, 1861
Sau96I GGNCC 6 cut(s) 35, 130, 252, 253, 484, 1228
SchI GAGTC 5 cut(s) 203, 254, 859, 890, 1017
ScrFI CCNGG 7 cut(s) 206, 250, 748, 764, 968, 1785, 1859
SduI GDGCHC 5 cut(s) 256, 701, 887, 1164, 1778
SfcI CTRYAG 1 cut(s) 1003
SfiI GGCCNNNNNGGCC 2 cut(s) 737, 1127
SinI GGWCC 3 cut(s) 35, 484, 1228
SmiMI CAYNNNNRTG 1 cut(s) 1167
Sse9I AATT 8 cut(s) 27, 576, 677, 833, 1218, 1499, 1582, 1816
SspMI CTAG 1 cut(s) 452
SstI GAGCTC 1 cut(s) 701
StyD4I CCNGG 7 cut(s) 204, 248, 746, 762, 966, 1783, 1857
StyI CCWWGG 3 cut(s) 726, 1418, 1869
TaiI ACGT 5 cut(s) 201, 468, 562, 1200, 1341
TaqI TCGA 7 cut(s) 95, 183, 587, 906, 1114, 1638, 1649
TasI AATT 8 cut(s) 27, 576, 677, 833, 1218, 1499, 1582, 1816
TauI GCSGC 3 cut(s) 347, 1045, 1226
TfiI GAWTC 4 cut(s) 92, 436, 959, 1741
TscAI CASTG 6 cut(s) 494, 540, 1277, 1450, 1537, 1725
TseFI GTSAC 3 cut(s) 604, 758, 1334
TseI GCWGC 4 cut(s) 621, 872, 1459, 1877
Tsp45I GTSAC 3 cut(s) 604, 758, 1334
TspDTI ATGAA 4 cut(s) 671, 990, 1148, 1541
TspGWI ACGGA 3 cut(s) 293, 568, 1095
TspRI CASTG 6 cut(s) 494, 540, 1277, 1450, 1537, 1725
Tth111I GACNNNGTC 1 cut(s) 561
Van91I CCANNNNNTGG 2 cut(s) 17, 1092
VpaK11BI GGWCC 3 cut(s) 35, 484, 1228
XapI RAATTY 4 cut(s) 833, 1499, 1582, 1816
XbaI TCTAGA 1 cut(s) 451
XceI RCATGY 2 cut(s) 430, 1297
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 1760
XspI CTAG 1 cut(s) 452
ZraI GACGTC 2 cut(s) 560, 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.