MD06G1159400.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000255
Physical Location & Seq
Reverse (-)
30098759 .. 30099343
585 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1159400.v1.1.491

Sequence Viewer

Length: 585 bp
ATGCTTTACTTCCAGGTCCTACGCTATGTGAAACATTCGAATTTAAGGCAAGCGGCTGAGCTTCATTGGAAGGCGATGGTGGAGGACATCTACTTAAAGCAAGGCAAATTCAAAAACTGCTTGGTTGTATTTGACCCTGGCAAGACACGCATAAGGGGGCTCAAGGAGGATGTGTCATCTGCATTGGGAATTTTGGTGGCTGAATTGAGTGAAGAGCCTTGGAAAGGAAAAGTTATCAGTTTCAGTAAGTTGCCAGAGCTGCATCGGATACAAGGGGATGATTTTAGGTACAAGTGCGAGTTTGTTAAAAGGATGGACAGAAACCGTGCGTGCAAGTGCGATTTTGTTAAAAGGATGGACAGCAACTGCTCGACTGATATCAAGAAGGTGTTTGATTTGATTCTCGAGGTGGCTGTGAATAAGAATTTGGAGCCAGAGCAGATGATCAAGAAGGCGTTTGTGTTCAGTCACCAAGTCCTTAAAAAGGAGGATTATCCCTATGGTGACTGCTGCTCGAAGACGGATTATAAGCAATACAAAGGAAGTTTACAGAGAAAGGATATGGAGATGTGGTGCCACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

195

Amino Acids

22.91

Weight (kDa)

9.09

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 57 - 162 7.7e-24 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 573
AciI CCGC 1 cut(s) 53
AcsI RAATTY 4 cut(s) 40, 107, 189, 424
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 224, 484
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 2 cut(s) 12, 136
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 2 cut(s) 61, 259
AluI AGCT 2 cut(s) 61, 259
AlwNI CAGNNNCTG 1 cut(s) 366
Ama87I CYCGRG 1 cut(s) 404
ApeKI GCWGC 2 cut(s) 259, 510
ApoI RAATTY 4 cut(s) 40, 107, 189, 424
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 461, 515
AsuII TTCGAA 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 404
AvaII GGWCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 573
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 524
BbvI GCAGC 2 cut(s) 246, 497
BccI CCATC 3 cut(s) 70, 307, 349
BciT130I CCWGG 2 cut(s) 14, 138
BciVI GTATCC 1 cut(s) 261
BclI TGATCA 1 cut(s) 444
BfuI GTATCC 1 cut(s) 261
BisI GCNGC 3 cut(s) 54, 260, 511
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 3 cut(s) 55, 261, 512
Bme1390I CCNGG 2 cut(s) 14, 138
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 432, 575
BmrFI CCNGG 2 cut(s) 14, 138
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 524
Bpu1102I GCTNAGC 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 136, 218
BsaXI ACNNNNNCTCC 3 cut(s) 158, 188, 557
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 484
BseBI CCWGG 2 cut(s) 14, 138
BseDI CCNNGG 2 cut(s) 136, 218
BseGI GGATG 4 cut(s) 175, 283, 318, 360
BseLI CCNNNNNNNGG 2 cut(s) 224, 484
BseMII CTCAG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 246, 497
BshNI GGYRCC 1 cut(s) 573
BsiHKCI CYCGRG 1 cut(s) 404
BslI CCNNNNNNNGG 2 cut(s) 224, 484
BsoBI CYCGRG 1 cut(s) 404
Bsp119I TTCGAA 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 162
Bsp143I GATC 1 cut(s) 444
Bsp1720I GCTNAGC 1 cut(s) 57
BspACI CCGC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 432, 575
BspQI GCTCTTC 1 cut(s) 207
BspT104I TTCGAA 1 cut(s) 38
BspT107I GGYRCC 1 cut(s) 573
BssECI CCNNGG 2 cut(s) 136, 218
BssMI GATC 1 cut(s) 444
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 2 cut(s) 14, 138
Bst4CI ACNGT 1 cut(s) 326
Bst6I CTCTTC 1 cut(s) 207
BstBI TTCGAA 1 cut(s) 38
BstC8I GCNNGC 2 cut(s) 51, 331
BstDEI CTNAG 1 cut(s) 57
BstENI CCTNNNNNAGG 2 cut(s) 222, 482
BstF5I GGATG 4 cut(s) 175, 283, 318, 360
BstKTI GATC 1 cut(s) 447
BstMBI GATC 1 cut(s) 444
BstMWI GCNNNNNNNGC 2 cut(s) 147, 259
BstNI CCWGG 2 cut(s) 14, 138
BstSCI CCNGG 2 cut(s) 12, 136
BstV1I GCAGC 2 cut(s) 246, 497
BstV2I GAAGAC 1 cut(s) 524
BsuI GTATCC 1 cut(s) 261
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 4 cut(s) 175, 283, 318, 360
Cac8I GCNNGC 2 cut(s) 51, 331
CaiI CAGNNNCTG 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 289
CviJI RGCY 8 cut(s) 56, 61, 160, 200, 217, 259, 413, 433
CviKI_1 RGCY 8 cut(s) 56, 61, 160, 200, 217, 259, 413, 433
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 446
DpnII GATC 1 cut(s) 444
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 218
Eco24I GRGCYC 1 cut(s) 162
Eco32I GATATC 1 cut(s) 379
Eco47I GGWCC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 404
EcoNI CCTNNNNNAGG 2 cut(s) 222, 482
EcoO109I RGGNCCY 1 cut(s) 16
EcoRII CCWGG 2 cut(s) 12, 136
EcoRV GATATC 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 218
FaiI YATR 5 cut(s) 27, 152, 501, 528, 563
FbaI TGATCA 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 54, 260, 511
FokI GGATG 4 cut(s) 182, 290, 325, 367
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 3 cut(s) 54, 260, 511
GluI GCNGC 3 cut(s) 54, 260, 511
HinfI GANTC 1 cut(s) 400
HphI GGTGA 2 cut(s) 461, 515
Hpy166II GTNNAC 1 cut(s) 548
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 3 cut(s) 382, 404, 448
Hpy8I GTNNAC 1 cut(s) 548
HpyAV CCTTC 3 cut(s) 64, 379, 445
HpyCH4III ACNGT 1 cut(s) 326
HpyCH4V TGCA 3 cut(s) 182, 262, 333
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 259
HpyF3I CTNAG 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 444
Kzo9I GATC 1 cut(s) 444
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 5 cut(s) 26, 123, 150, 267, 447
Lsp1109I GCAGC 2 cut(s) 246, 497
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 467, 503
MalI GATC 1 cut(s) 446
MboI GATC 1 cut(s) 444
MboII GAAGA 2 cut(s) 224, 529
MhlI GDGCHC 1 cut(s) 162
MluCI AATT 6 cut(s) 40, 107, 189, 203, 424, 580
MnlI CCTC 4 cut(s) 76, 160, 400, 481
MseI TTAA 5 cut(s) 44, 95, 306, 348, 480
MspR9I CCNGG 2 cut(s) 14, 138
MvaI CCWGG 2 cut(s) 14, 138
MwoI GCNNNNNNNGC 2 cut(s) 147, 259
NdeII GATC 1 cut(s) 444
NlaIV GGNNCC 2 cut(s) 432, 575
NmuCI GTSAC 2 cut(s) 467, 503
NspV TTCGAA 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 404
PciSI GCTCTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 400
PkrI GCNGC 3 cut(s) 55, 261, 512
PpuMI RGGWCCY 1 cut(s) 16
PsiI TTATAA 1 cut(s) 528
Psp5II RGGWCCY 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 12, 136
PspGI CCWGG 2 cut(s) 12, 136
PspN4I GGNNCC 2 cut(s) 432, 575
PspPI GGNCC 1 cut(s) 16
PspPPI RGGWCCY 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 366
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 5 cut(s) 44, 95, 306, 348, 480
SatI GCNGC 3 cut(s) 54, 260, 511
Sau3AI GATC 1 cut(s) 444
Sau96I GGNCC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 14, 138
SduI GDGCHC 1 cut(s) 162
SetI ASST 6 cut(s) 18, 63, 261, 290, 390, 411
SfaNI GCATC 1 cut(s) 271
Sfr274I CTCGAG 1 cut(s) 404
SfuI TTCGAA 1 cut(s) 38
SinI GGWCC 1 cut(s) 16
SlaI CTCGAG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 161, 404
SmoI CTYRAG 2 cut(s) 161, 404
Sse9I AATT 6 cut(s) 40, 107, 189, 203, 424, 580
SsiI CCGC 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 12, 136
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 326
TaqI TCGA 4 cut(s) 38, 371, 405, 515
TasI AATT 6 cut(s) 40, 107, 189, 203, 424, 580
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 400
Tru1I TTAA 5 cut(s) 44, 95, 306, 348, 480
Tru9I TTAA 5 cut(s) 44, 95, 306, 348, 480
TseFI GTSAC 2 cut(s) 467, 503
TseI GCWGC 2 cut(s) 259, 510
Tsp45I GTSAC 2 cut(s) 467, 503
TspDTI ATGAA 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 536
VpaK11BI GGWCC 1 cut(s) 16
XagI CCTNNNNNAGG 2 cut(s) 222, 482
XapI RAATTY 4 cut(s) 40, 107, 189, 424
XhoI CTCGAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.