RLG00000019506

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000255
Physical Location & Seq
Reverse (-)
52886926 .. 52887891
966 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019506

Sequence Viewer

Length: 792 bp
ATGGCTCCTCCAAGTCTTCTCGGTCCTCCACAGCTCAATCGATCCGCCACCCAACCCGAGCCAGCTTCCGGCGACCCCTTCATCCATTCCATGATCGCCGATTTCAACAACCTCAACAAGCCCACCCCTAAACCCCCGATGGGCTTCATCGAGAACGACTCCGCCACATTCCTCTCCTCCGGCAACCCTTGCCTCGATCTTTTCTTCCACGTCGTACCGCAAACTTCGGCGTCCTATCTCCACCAGCAGCTCCCTCTCGCTTGGACTCACGACCCCCTAACCACCCTCAAGCTCATCTGCAACCTCCGCGGAACCCAAAAGGAAGAGTGGCAACAGAGAAAACACTCCATCGGGAGAAGGGCCTCCCCGAGAGGCAAGGCGACGAAGTCGGCGAAAACCAAGAGCCTCGGAGTAACCAGGCAGGAGCCGAAAGAGGCCAGAAAATCCAAGGCGGCAGAGAGGGTAAGATCGGAAAGGGCAAATATCAGCGCATTGAGGCATCAGAAGACTATGGAGATGGCCAAGAAGGCCGTTGAGAGGTACCAGCGAGACCCGGATTACCGGTTTTTATATGACCGGGTTTCGGATCTTTTCAGTGAGTGTTTGAAGTCCGATGTCGAGAATCTCAAGGCCAATCAGTACAAGAAGATCAGCTTGGCGGCCAAGTGGTGCCCTTCTATCGATTCCTCGTTTGATAAGGCAACATTGCTATGTGAAAGCATAGCAAGGAACGTTTTCCTTAGGGAATCGTATCCGGAATATCAAGGAATCGAGGAGGCTCATTATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

264

Amino Acids

29.81

Weight (kDa)

9.37

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 51 - 106 9.2e-18 Domain of unknown function (DUF2828)
DUF2828 PF11443 126 - 262 7.4e-35 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 540
AccB1I GGYRCC 2 cut(s) 540, 669
AccII CGCG 1 cut(s) 309
AccIII TCCGGA 1 cut(s) 754
AciI CCGC 7 cut(s) 45, 162, 218, 307, 309, 452, 659
AclI AACGTT 1 cut(s) 732
AclWI GGATC 2 cut(s) 36, 594
AcoI YGGCCR 2 cut(s) 519, 660
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 3 cut(s) 216, 542, 641
AfiI CCNNNNNNNGG 4 cut(s) 68, 140, 537, 583
AgeI ACCGGT 1 cut(s) 561
AgsI TTSAA 2 cut(s) 106, 607
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 1 cut(s) 416
AjuI GAANNNNNNNTTGG 2 cut(s) 638, 670
AluBI AGCT 5 cut(s) 34, 65, 250, 292, 654
AluI AGCT 5 cut(s) 34, 65, 250, 292, 654
Alw26I GTCTC 1 cut(s) 543
AlwI GGATC 2 cut(s) 36, 594
Ama87I CYCGRG 2 cut(s) 56, 367
Aor13HI TCCGGA 1 cut(s) 754
AoxI GGCC 6 cut(s) 360, 435, 519, 528, 630, 660
ApeKI GCWGC 1 cut(s) 247
AsiGI ACCGGT 1 cut(s) 561
Asp700I GAANNNNTTC 1 cut(s) 734
Asp718I GGTACC 1 cut(s) 540
AspLEI GCGC 1 cut(s) 491
AspS9I GGNCC 2 cut(s) 23, 360
AsuC2I CCSGG 2 cut(s) 554, 578
AvaI CYCGRG 2 cut(s) 56, 367
AvaII GGWCC 1 cut(s) 23
AxyI CCTNAGG 1 cut(s) 740
BaeGI GKGCMC 1 cut(s) 674
BalI TGGCCA 1 cut(s) 521
BanI GGYRCC 2 cut(s) 540, 669
BbsI GAAGAC 2 cut(s) 8, 512
BbvI GCAGC 1 cut(s) 259
BccI CCATC 3 cut(s) 133, 356, 511
BceAI ACGGC 1 cut(s) 515
BciT130I CCWGG 1 cut(s) 418
BciVI GTATCC 1 cut(s) 762
BcnI CCSGG 2 cut(s) 554, 578
BcoDI GTCTC 1 cut(s) 543
BfuI GTATCC 1 cut(s) 762
BglI GCCNNNNNGGC 1 cut(s) 527
BisI GCNGC 3 cut(s) 248, 453, 660
BlsI GCNGC 3 cut(s) 249, 454, 661
Bme1390I CCNGG 3 cut(s) 418, 554, 578
Bme18I GGWCC 1 cut(s) 23
BmeT110I CYCGRG 2 cut(s) 56, 367
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 23, 360
BmiI GGNNCC 5 cut(s) 6, 313, 426, 542, 671
BmrFI CCNGG 3 cut(s) 418, 554, 578
BmsI GCATC 1 cut(s) 508
BpiI GAAGAC 2 cut(s) 8, 512
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpuEI CTTGAG 2 cut(s) 272, 611
BpuMI CCSGG 2 cut(s) 554, 578
Bsa29I ATCGAT 2 cut(s) 40, 681
BsaHI GRCGYC 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 543
BsaJI CCNNGG 3 cut(s) 307, 406, 447
BsaWI WCCGGW 2 cut(s) 561, 754
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 140, 537, 583
Bse118I RCCGGY 1 cut(s) 561
Bse21I CCTNAGG 1 cut(s) 740
Bse3DI GCAATG 1 cut(s) 704
BseAI TCCGGA 1 cut(s) 754
BseBI CCWGG 1 cut(s) 418
BseCI ATCGAT 2 cut(s) 40, 681
BseDI CCNNGG 3 cut(s) 307, 406, 447
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 4 cut(s) 68, 140, 537, 583
BseMI GCAATG 1 cut(s) 704
BseRI GAGGAG 2 cut(s) 166, 788
BseSI GKGCMC 1 cut(s) 674
BseXI GCAGC 1 cut(s) 259
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 6 cut(s) 362, 437, 521, 530, 632, 662
BshNI GGYRCC 2 cut(s) 540, 669
BshTI ACCGGT 1 cut(s) 561
BshVI ATCGAT 2 cut(s) 40, 681
BsiHKCI CYCGRG 2 cut(s) 56, 367
BsiSI CCGG 6 cut(s) 69, 180, 554, 562, 577, 755
BslI CCNNNNNNNGG 4 cut(s) 68, 140, 537, 583
BsmAI GTCTC 1 cut(s) 543
BsnI GGCC 6 cut(s) 362, 437, 521, 530, 632, 662
Bso31I GGTCTC 1 cut(s) 543
BsoBI CYCGRG 2 cut(s) 56, 367
Bsp1286I GDGCHC 1 cut(s) 674
Bsp13I TCCGGA 1 cut(s) 754
Bsp143I GATC 6 cut(s) 41, 93, 196, 467, 586, 648
BspACI CCGC 7 cut(s) 45, 162, 218, 307, 309, 452, 659
BspANI GGCC 6 cut(s) 362, 437, 521, 530, 632, 662
BspDI ATCGAT 2 cut(s) 40, 681
BspEI TCCGGA 1 cut(s) 754
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 5 cut(s) 6, 313, 426, 542, 671
BspPI GGATC 2 cut(s) 36, 594
BspT107I GGYRCC 2 cut(s) 540, 669
BspTNI GGTCTC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 704
BsrFI RCCGGY 1 cut(s) 561
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 3 cut(s) 307, 406, 447
BssMI GATC 6 cut(s) 41, 93, 196, 467, 586, 648
BssNI GRCGYC 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 447
Bst2UI CCWGG 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 318
BstACI GRCGYC 1 cut(s) 230
BstAPI GCANNNNNTGC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 63
BstDEI CTNAG 1 cut(s) 740
BstDSI CCRYGG 1 cut(s) 307
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 309
BstHHI GCGC 1 cut(s) 491
BstKTI GATC 6 cut(s) 44, 96, 199, 470, 589, 651
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 6 cut(s) 41, 93, 196, 467, 586, 648
BstMWI GCNNNNNNNGC 3 cut(s) 189, 306, 527
BstNI CCWGG 1 cut(s) 418
BstSCI CCNGG 3 cut(s) 416, 552, 576
BstSLI GKGCMC 1 cut(s) 674
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 2 cut(s) 8, 512
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
Bsu15I ATCGAT 2 cut(s) 40, 681
Bsu36I CCTNAGG 1 cut(s) 740
BsuI GTATCC 1 cut(s) 762
BsuRI GGCC 6 cut(s) 362, 437, 521, 530, 632, 662
BsuTUI ATCGAT 2 cut(s) 40, 681
BtgI CCRYGG 1 cut(s) 307
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 601
Cac8I GCNNGC 1 cut(s) 63
CfoI GCGC 1 cut(s) 491
Cfr10I RCCGGY 1 cut(s) 561
Cfr13I GGNCC 2 cut(s) 23, 360
Cfr42I CCGCGG 1 cut(s) 310
ClaI ATCGAT 2 cut(s) 40, 681
CseI GACGC 1 cut(s) 219
Csp6I GTAC 3 cut(s) 215, 541, 640
CspAI ACCGGT 1 cut(s) 561
CviAII CATG 1 cut(s) 91
CviQI GTAC 3 cut(s) 215, 541, 640
DdeI CTNAG 1 cut(s) 740
DpnI GATC 6 cut(s) 43, 95, 198, 469, 588, 650
DpnII GATC 6 cut(s) 41, 93, 196, 467, 586, 648
EaeI YGGCCR 2 cut(s) 519, 660
Eam1104I CTCTTC 1 cut(s) 318
EarI CTCTTC 1 cut(s) 318
EciI GGCGGA 2 cut(s) 34, 151
Eco130I CCWWGG 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 23
Eco81I CCTNAGG 1 cut(s) 740
Eco88I CYCGRG 2 cut(s) 56, 367
EcoO109I RGGNCCY 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 416
EcoT14I CCWWGG 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 447
FaeI CATG 1 cut(s) 94
FaiI YATR 7 cut(s) 92, 512, 571, 573, 712, 722, 786
FalI AAGNNNNNCTT 2 cut(s) 638, 670
FatI CATG 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 248, 453, 660
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 3 cut(s) 248, 453, 660
GlaI GCGC 1 cut(s) 490
GluI GCNGC 3 cut(s) 248, 453, 660
HaeIII GGCC 6 cut(s) 362, 437, 521, 530, 632, 662
HapII CCGG 6 cut(s) 69, 180, 554, 562, 577, 755
HgaI GACGC 1 cut(s) 219
HhaI GCGC 1 cut(s) 491
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 1 cut(s) 94
Hin6I GCGC 1 cut(s) 489
HinP1I GCGC 1 cut(s) 489
HinfI GANTC 6 cut(s) 158, 265, 622, 683, 746, 768
HpaII CCGG 6 cut(s) 69, 180, 554, 562, 577, 755
Hpy188I TCNGA 5 cut(s) 410, 472, 504, 586, 613
Hpy188III TCNNGA 5 cut(s) 151, 269, 352, 619, 755
Hpy99I CGWCG 2 cut(s) 215, 385
HpyAV CCTTC 4 cut(s) 88, 351, 520, 684
HpyCH4IV ACGT 2 cut(s) 210, 732
HpyCH4V TGCA 1 cut(s) 300
HpyF10VI GCNNNNNNNGC 3 cut(s) 189, 306, 527
HpyF3I CTNAG 1 cut(s) 740
HpySE526I ACGT 2 cut(s) 210, 732
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 1 cut(s) 94
HspAI GCGC 1 cut(s) 489
Kpn2I TCCGGA 1 cut(s) 754
KpnI GGTACC 1 cut(s) 544
KspI CCGCGG 1 cut(s) 310
Kzo9I GATC 6 cut(s) 41, 93, 196, 467, 586, 648
LmnI GCTCC 3 cut(s) 10, 255, 424
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 508
MaeII ACGT 2 cut(s) 210, 732
MaeIII GTNAC 1 cut(s) 412
MalI GATC 6 cut(s) 43, 95, 198, 469, 588, 650
MboI GATC 6 cut(s) 41, 93, 196, 467, 586, 648
MboII GAAGA 5 cut(s) 8, 196, 335, 517, 658
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 1 cut(s) 674
MlsI TGGCCA 1 cut(s) 521
MluNI TGGCCA 1 cut(s) 521
MlyI GAGTC 2 cut(s) 152, 259
Mox20I TGGCCA 1 cut(s) 521
MroI TCCGGA 1 cut(s) 754
MroXI GAANNNNTTC 1 cut(s) 734
MscI TGGCCA 1 cut(s) 521
MseI TTAA 1 cut(s) 790
MslI CAYNNNNRTG 1 cut(s) 709
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 1 cut(s) 309
MspI CCGG 6 cut(s) 69, 180, 554, 562, 577, 755
MspR9I CCNGG 3 cut(s) 418, 554, 578
MvaI CCWGG 1 cut(s) 418
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 3 cut(s) 189, 306, 527
NciI CCSGG 2 cut(s) 554, 578
NdeII GATC 6 cut(s) 41, 93, 196, 467, 586, 648
NlaIII CATG 1 cut(s) 94
NlaIV GGNNCC 5 cut(s) 6, 313, 426, 542, 671
PcsI WCGNNNNNNNCGW 1 cut(s) 389
PdmI GAANNNNTTC 1 cut(s) 734
PfeI GAWTC 4 cut(s) 622, 683, 746, 768
PflFI GACNNNGTC 1 cut(s) 385
PinAI ACCGGT 1 cut(s) 561
PkrI GCNGC 3 cut(s) 249, 454, 661
PleI GAGTC 2 cut(s) 152, 259
PpsI GAGTC 2 cut(s) 152, 259
Psp1406I AACGTT 1 cut(s) 732
Psp6I CCWGG 1 cut(s) 416
PspGI CCWGG 1 cut(s) 416
PspN4I GGNNCC 5 cut(s) 6, 313, 426, 542, 671
PspPI GGNCC 2 cut(s) 23, 360
PsuI RGATCY 1 cut(s) 586
PsyI GACNNNGTC 1 cut(s) 385
RsaI GTAC 3 cut(s) 216, 542, 641
RsaNI GTAC 3 cut(s) 215, 541, 640
RseI CAYNNNNRTG 1 cut(s) 709
SacII CCGCGG 1 cut(s) 310
SaqAI TTAA 1 cut(s) 790
SatI GCNGC 3 cut(s) 248, 453, 660
Sau3AI GATC 6 cut(s) 41, 93, 196, 467, 586, 648
Sau96I GGNCC 2 cut(s) 23, 360
SchI GAGTC 2 cut(s) 152, 259
ScrFI CCNGG 3 cut(s) 418, 554, 578
SduI GDGCHC 1 cut(s) 674
SfaNI GCATC 1 cut(s) 508
SfiI GGCCNNNNNGGCC 1 cut(s) 527
Sfr303I CCGCGG 1 cut(s) 310
SgrBI CCGCGG 1 cut(s) 310
SinI GGWCC 1 cut(s) 23
SmiMI CAYNNNNRTG 1 cut(s) 709
SmlI CTYRAG 2 cut(s) 287, 626
SmoI CTYRAG 2 cut(s) 287, 626
SsiI CCGC 7 cut(s) 45, 162, 218, 307, 309, 452, 659
StyD4I CCNGG 3 cut(s) 416, 552, 576
StyI CCWWGG 1 cut(s) 447
TaiI ACGT 2 cut(s) 213, 735
TaqI TCGA 6 cut(s) 40, 150, 195, 618, 681, 771
TaqII GACCGA 1 cut(s) 11
TatI WGTACW 1 cut(s) 639
TauI GCSGC 2 cut(s) 455, 662
TfiI GAWTC 4 cut(s) 622, 683, 746, 768
Tru1I TTAA 1 cut(s) 790
Tru9I TTAA 1 cut(s) 790
TscAI CASTG 1 cut(s) 601
TseI GCWGC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 70, 136
TspRI CASTG 1 cut(s) 601
Tth111I GACNNNGTC 1 cut(s) 385
VpaK11BI GGWCC 1 cut(s) 23
XmnI GAANNNNTTC 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.