RLG00000019505

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000255
Physical Location & Seq
Reverse (-)
52885981 .. 52886799
819 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019505

Sequence Viewer

Length: 819 bp
ATGAAGCTTTACAAGGAGAAGTTCTTCAAGCATGATGAAGAGAGGTTCAAAAAGTACTTGGAGAATGTGCAGGCCAGCAAGTCCAAGATTGCTATCGGTGTTCTGCTGCCGCACGAGATCATAGCCTCTCTGAGGGACAGTGATGGGGGCCAAGTGGCCGAGCTTCAGTGGCAGAGAATGGTTGAGGATATGTTGAAGTTGGGGAAGATGAAGAATTGCTTGGCTGTGTGTGACGTGTCAGGAAGCATGTGTAGAGAGCCAATGCAGGTGTGTATGGCTTTGGGGCTTTTGGTGTCTGAGCTGTGTGATAAGCCATGGAAAGGGAAGGTGATCACCTTCAGTCAGAACCCTAAACTACATTTAATCCTAGGTGGAAGTCTCCAGTCCAAGACCGATTTTATAAGGTATATGGAATGGGGGATGAACACTGATTTTCAGAAGGTGTTTGATTTGCTTCTCCAGGTGGCGGTTAATGGAAAGTTGAAGCCAGAAAATATGATCAAGAGGATTTTTGTGTTCAGTGACATGGAGTTTAATCAGGCCTCTTCAAATAGATGGGAGACTGATTATGAGGTGATTCAAAGAAAGTATAGGGAGAATGGGTATGGGGATGCTGTGCCACAGATAGTGTTTTGGAATCTGAGGGACTCGAGGTCTACTCCTGTGCTAGGGACTCAACCTAGGGTGGCTTTGTTGAGTGGCTTTTCCAAGAACTTGCTCAAGTTGTTCCTGGATTGTGATGGGGAAATCCGCCCGGACCTGACCATGGAATTGGCTATCTCTGGCCCTGAGTACCAGAAGTTGGTTGTCCGGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

273

Amino Acids

31.27

Weight (kDa)

8.42

Isoelectric Point (pI)

29.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 1 - 70 1.2e-18 Domain of unknown function (DUF2828)
DUF7788 PF25043 72 - 250 6.3e-78 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AarI CACCTGC 1 cut(s) 256
Acc36I ACCTGC 1 cut(s) 256
AccB7I CCANNNNNTGG 1 cut(s) 802
AccI GTMKAC 1 cut(s) 656
AciI CCGC 3 cut(s) 110, 467, 751
AcoI YGGCCR 1 cut(s) 156
AcuI CTGAAG 2 cut(s) 149, 322
AfaI GTAC 2 cut(s) 56, 794
AfiI CCNNNNNNNGG 6 cut(s) 132, 320, 466, 668, 766, 802
AflIII ACRYGT 1 cut(s) 234
AgsI TTSAA 6 cut(s) 28, 49, 196, 484, 549, 581
AhdI GACNNNNNGTC 1 cut(s) 652
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 2 cut(s) 459, 729
AjuI GAANNNNNNNTTGG 2 cut(s) 203, 235
AluBI AGCT 3 cut(s) 7, 163, 301
AluI AGCT 3 cut(s) 7, 163, 301
Alw26I GTCTC 2 cut(s) 383, 554
Ama87I CYCGRG 1 cut(s) 649
AoxI GGCC 5 cut(s) 72, 148, 156, 540, 784
ApeKI GCWGC 1 cut(s) 106
Asp700I GAANNNNTTC 1 cut(s) 23
AspA2I CCTAGG 2 cut(s) 367, 680
AspS9I GGNCC 3 cut(s) 148, 757, 785
AsuC2I CCSGG 2 cut(s) 755, 812
AsuHPI GGTGA 3 cut(s) 325, 340, 586
AvaI CYCGRG 1 cut(s) 649
AvaII GGWCC 1 cut(s) 757
AvrII CCTAGG 2 cut(s) 367, 680
BauI CACGAG 1 cut(s) 113
BbvI GCAGC 1 cut(s) 93
BccI CCATC 3 cut(s) 137, 549, 734
BciT130I CCWGG 2 cut(s) 461, 731
BclI TGATCA 2 cut(s) 330, 498
BcnI CCSGG 2 cut(s) 755, 812
BcoDI GTCTC 2 cut(s) 383, 554
BfaI CTAG 3 cut(s) 368, 668, 681
BfuAI ACCTGC 1 cut(s) 256
BisI GCNGC 2 cut(s) 107, 110
BlnI CCTAGG 2 cut(s) 367, 680
BlsI GCNGC 2 cut(s) 108, 111
BmcAI AGTACT 1 cut(s) 56
Bme1390I CCNGG 4 cut(s) 461, 731, 755, 812
Bme18I GGWCC 1 cut(s) 757
BmeRI GACNNNNNGTC 1 cut(s) 652
BmeT110I CYCGRG 1 cut(s) 649
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 148, 757, 785
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 4 cut(s) 461, 731, 755, 812
BmsI GCATC 1 cut(s) 601
BplI GAGNNNNNCTC 2 cut(s) 643, 675
BpmI CTGGAG 2 cut(s) 365, 443
BpuEI CTTGAG 1 cut(s) 704
BpuMI CCSGG 2 cut(s) 755, 812
BsaBI GATNNNNATC 1 cut(s) 92
BsaJI CCNNGG 4 cut(s) 314, 367, 680, 765
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 6 cut(s) 132, 320, 466, 668, 766, 802
Bse1I ACTGG 1 cut(s) 382
Bse8I GATNNNNATC 1 cut(s) 92
BseBI CCWGG 2 cut(s) 461, 731
BseDI CCNNGG 4 cut(s) 314, 367, 680, 765
BseGI GGATG 2 cut(s) 426, 616
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 6 cut(s) 132, 320, 466, 668, 766, 802
BseMII CTCAG 4 cut(s) 122, 288, 632, 780
BseNI ACTGG 1 cut(s) 382
BseXI GCAGC 1 cut(s) 93
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 5 cut(s) 74, 150, 158, 542, 786
BsiHKCI CYCGRG 1 cut(s) 649
BsiSI CCGG 2 cut(s) 755, 811
BslFI GGGAC 3 cut(s) 149, 659, 685
BslI CCNNNNNNNGG 6 cut(s) 132, 320, 466, 668, 766, 802
BsmAI GTCTC 2 cut(s) 383, 554
BsmFI GGGAC 3 cut(s) 149, 659, 685
BsnI GGCC 5 cut(s) 74, 150, 158, 542, 786
BsoBI CYCGRG 1 cut(s) 649
Bsp143I GATC 3 cut(s) 117, 330, 498
Bsp19I CCATGG 2 cut(s) 314, 765
BspACI CCGC 3 cut(s) 110, 467, 751
BspANI GGCC 5 cut(s) 74, 150, 158, 542, 786
BspCNI CTCAG 4 cut(s) 123, 289, 633, 781
BspLI GGNNCC 1 cut(s) 149
BspMI ACCTGC 1 cut(s) 256
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 4 cut(s) 314, 367, 680, 765
BssMI GATC 3 cut(s) 117, 330, 498
BssSI CACGAG 1 cut(s) 113
BssT1I CCWWGG 4 cut(s) 314, 367, 680, 765
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 461, 731
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 2 cut(s) 33, 550
BstC8I GCNNGC 2 cut(s) 72, 76
BstDEI CTNAG 4 cut(s) 131, 297, 641, 789
BstDSI CCRYGG 2 cut(s) 314, 765
BstENI CCTNNNNNAGG 2 cut(s) 130, 666
BstF5I GGATG 2 cut(s) 426, 616
BstKTI GATC 3 cut(s) 120, 333, 501
BstMAI GTCTC 2 cut(s) 383, 554
BstMBI GATC 3 cut(s) 117, 330, 498
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNI CCWGG 2 cut(s) 461, 731
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 4 cut(s) 459, 729, 753, 810
BstV1I GCAGC 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 772
BsuRI GGCC 5 cut(s) 74, 150, 158, 542, 786
BtgI CCRYGG 2 cut(s) 314, 765
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 426, 616
BtsIMutI CAGTG 4 cut(s) 145, 173, 426, 526
BveI ACCTGC 1 cut(s) 256
Cac8I GCNNGC 2 cut(s) 72, 76
Cfr13I GGNCC 3 cut(s) 148, 757, 785
Csp6I GTAC 2 cut(s) 55, 793
CviAII CATG 5 cut(s) 32, 247, 315, 526, 766
CviQI GTAC 2 cut(s) 55, 793
DdeI CTNAG 4 cut(s) 131, 297, 641, 789
DpnI GATC 3 cut(s) 119, 332, 500
DpnII GATC 3 cut(s) 117, 330, 498
DriI GACNNNNNGTC 1 cut(s) 652
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 2 cut(s) 33, 550
Eam1105I GACNNNNNGTC 1 cut(s) 652
EarI CTCTTC 2 cut(s) 33, 550
EciI GGCGGA 1 cut(s) 740
Eco130I CCWWGG 4 cut(s) 314, 367, 680, 765
Eco147I AGGCCT 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 757
Eco57I CTGAAG 2 cut(s) 149, 322
Eco88I CYCGRG 1 cut(s) 649
EcoNI CCTNNNNNAGG 2 cut(s) 130, 666
EcoRII CCWGG 2 cut(s) 459, 729
EcoT14I CCWWGG 4 cut(s) 314, 367, 680, 765
ErhI CCWWGG 4 cut(s) 314, 367, 680, 765
FaeI CATG 5 cut(s) 35, 250, 318, 529, 769
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 3 cut(s) 149, 659, 685
FatI CATG 5 cut(s) 31, 246, 314, 525, 765
FbaI TGATCA 2 cut(s) 330, 498
FblI GTMKAC 1 cut(s) 656
Fnu4HI GCNGC 2 cut(s) 107, 110
FokI GGATG 2 cut(s) 433, 623
Fsp4HI GCNGC 2 cut(s) 107, 110
FspBI CTAG 3 cut(s) 368, 668, 681
GluI GCNGC 2 cut(s) 107, 110
GsuI CTGGAG 2 cut(s) 365, 443
HaeIII GGCC 5 cut(s) 74, 150, 158, 542, 786
HapII CCGG 2 cut(s) 755, 811
Hin1II CATG 5 cut(s) 35, 250, 318, 529, 769
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 4 cut(s) 577, 637, 647, 673
HpaII CCGG 2 cut(s) 755, 811
HphI GGTGA 3 cut(s) 325, 340, 586
Hpy166II GTNNAC 1 cut(s) 657
Hpy188I TCNGA 5 cut(s) 132, 298, 345, 438, 642
Hpy188III TCNNGA 2 cut(s) 240, 502
Hpy8I GTNNAC 1 cut(s) 657
HpyAV CCTTC 3 cut(s) 319, 346, 433
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 70, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 4 cut(s) 131, 297, 641, 789
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 5 cut(s) 35, 250, 318, 529, 769
Ksp22I TGATCA 2 cut(s) 330, 498
Kzo9I GATC 3 cut(s) 117, 330, 498
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 1 cut(s) 601
MaeI CTAG 3 cut(s) 368, 668, 681
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 230, 521
MalI GATC 3 cut(s) 119, 332, 500
MboI GATC 3 cut(s) 117, 330, 498
MboII GAAGA 5 cut(s) 16, 50, 217, 223, 537
MluCI AATT 2 cut(s) 214, 770
MlyI GAGTC 2 cut(s) 641, 667
MnlI CCTC 9 cut(s) 36, 126, 136, 178, 498, 553, 565, 636, 645
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 3 cut(s) 362, 471, 534
MspI CCGG 2 cut(s) 755, 811
MspR9I CCNGG 4 cut(s) 461, 731, 755, 812
MvaI CCWGG 2 cut(s) 461, 731
MwoI GCNNNNNNNGC 1 cut(s) 169
NciI CCSGG 2 cut(s) 755, 812
NcoI CCATGG 2 cut(s) 314, 765
NdeII GATC 3 cut(s) 117, 330, 498
NlaIII CATG 5 cut(s) 35, 250, 318, 529, 769
NlaIV GGNNCC 1 cut(s) 149
NmeAIII GCCGAG 1 cut(s) 184
NmuCI GTSAC 2 cut(s) 230, 521
NspI RCATGY 1 cut(s) 250
PaeR7I CTCGAG 1 cut(s) 649
PaqCI CACCTGC 1 cut(s) 256
PceI AGGCCT 1 cut(s) 542
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 577, 637
PflMI CCANNNNNTGG 1 cut(s) 802
PfoI TCCNGGA 2 cut(s) 729, 810
PkrI GCNGC 2 cut(s) 108, 111
PleI GAGTC 2 cut(s) 641, 667
PpsI GAGTC 2 cut(s) 641, 667
PsiI TTATAA 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 459, 729
PspGI CCWGG 2 cut(s) 459, 729
PspN4I GGNNCC 1 cut(s) 149
PspPI GGNCC 3 cut(s) 148, 757, 785
PspXI VCTCGAGB 1 cut(s) 649
RsaI GTAC 2 cut(s) 56, 794
RsaNI GTAC 2 cut(s) 55, 793
SaqAI TTAA 3 cut(s) 362, 471, 534
SatI GCNGC 2 cut(s) 107, 110
Sau3AI GATC 3 cut(s) 117, 330, 498
Sau96I GGNCC 3 cut(s) 148, 757, 785
ScaI AGTACT 1 cut(s) 56
SchI GAGTC 2 cut(s) 641, 667
ScrFI CCNGG 4 cut(s) 461, 731, 755, 812
SfaNI GCATC 1 cut(s) 601
Sfr274I CTCGAG 1 cut(s) 649
SinI GGWCC 1 cut(s) 757
SlaI CTCGAG 1 cut(s) 649
SmlI CTYRAG 2 cut(s) 649, 719
SmoI CTYRAG 2 cut(s) 649, 719
Sse9I AATT 2 cut(s) 214, 770
SseBI AGGCCT 1 cut(s) 542
SsiI CCGC 3 cut(s) 110, 467, 751
SspMI CTAG 3 cut(s) 368, 668, 681
StuI AGGCCT 1 cut(s) 542
StyD4I CCNGG 4 cut(s) 459, 729, 753, 810
StyI CCWWGG 4 cut(s) 314, 367, 680, 765
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 650
TaqII GACCGA 1 cut(s) 407
TasI AATT 2 cut(s) 214, 770
TatI WGTACW 1 cut(s) 54
TauI GCSGC 1 cut(s) 112
TfiI GAWTC 2 cut(s) 577, 637
Tru1I TTAA 3 cut(s) 362, 471, 534
Tru9I TTAA 3 cut(s) 362, 471, 534
TscAI CASTG 4 cut(s) 145, 173, 433, 526
TseFI GTSAC 2 cut(s) 230, 521
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 2 cut(s) 230, 521
TspDTI ATGAA 4 cut(s) 17, 51, 224, 437
TspRI CASTG 4 cut(s) 145, 173, 433, 526
Van91I CCANNNNNTGG 1 cut(s) 802
VpaK11BI GGWCC 1 cut(s) 757
XagI CCTNNNNNAGG 2 cut(s) 130, 666
XceI RCATGY 1 cut(s) 250
XhoI CTCGAG 1 cut(s) 649
XmaJI CCTAGG 2 cut(s) 367, 680
XmiI GTMKAC 1 cut(s) 656
XmnI GAANNNNTTC 1 cut(s) 23
XspI CTAG 3 cut(s) 368, 668, 681
ZrmI AGTACT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.