Rh7BG070200

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000255
Physical Location & Seq
Reverse (-)
4719415 .. 4721198
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG070200.1

Sequence Viewer

Length: 1725 bp
ATGGCTCCTCCTAGTCTTCTTGGCCCTCCACAGGTCACCAATCCCATCCCACCGGCCCAACCCGACTCCGGCGCAAGACCCCCGATGGGCTTGACCGAGAATTGTTCCCCAACCTTCTTGACCTCCGGCAACCCCTGCCTTGATCTCTTCTTCCAAGTCGTACCGGATACTCCGGCGTCCTATCTCAACAAACAGCTCCCTCTCGCCTGGGCCTACAATCCCCTGACCACCCTAAAGCTCATCTGCAACCTGAGAGGCGTACGTGGCACGGGGAAGTCCGATAAAGAAGGGTTCTACACGGCGGCGCTTTGGCTTCACAAGAACCACCCCAAAACCCTAGCGTGCAACGCTGCGTCTTTGGCGGAATTCGGTTACTTCAAGGACTTGCCGGAGATTCTGTACCGCCTTCTAGAAGGCCAGGACGTGAGGGAGAAGCAAAAGATGGATTGGCAGTGCCGAAAACGGACTATTCGGAGGCTGGTTGGCCGAGTTAGTATTGGACGCCGGAGGGTCAGACGTGGCGGTTGTGCTAAATTGAATAAATCAAAGCAGGTCGGAAAGCCCAAAGCTGTCAGCCGGCAGAAGTTGCCTAAGGATGTAAGGGAAAAGATGGCTGCGGAGAAGCGGAGATTGGAGAAGGAGAAAGTGAGTGCAGCGAGGCTGGAGAAGAAGATTGCGATGGGTAAGAAGGCCGTTGCAAGGTACCAGCGTGACCCGGATTACCGATTCTTGCATGACAGGGTTTCGGATCTTTTCGCTGACTGCTTGAAATCTGATATGGAGAGTCTCAAGAACAACAATACTAACACGATAGGCCTGGCGGCAAAGTGGTGTCCTTCGCTTGATTCTTCGTTTGATCGAGCCACATTGCTCTGCGAAAGCATTGCGAGGAAGATTTTCACCCGAGAATTGTATCTGGAATATGAAGGAGTTGAGGAGGCACATTATGCTTACAGAGTCCGAGACCGGCTGAGGAAGGAGGTGTTGGTGCCATTGAGGAAGGTGTTGCAGCTGCCGGAGGTTTATATGGGTGCCAACAAGTGGGGGGAGATTCCCTACAAGAGAGTGGCCTCAGTCGCCATGAAGCTTTACAAGGGGAAGTTCTTGAAGCACGATGAAGAGAGGTTTAAGAAGTATTTGGAGGATGTGAAAGCCGGGAAGGCCACGATTGCGGCTGGTGCTCTGCTTCCACATGAGATCATAGCCTCTCTGAATGATGAGGATGGTGGGGAAGTGGGTGAGCTTCAGTGGAAGAGAATGGTGGAGGACCTGGGGGAGCTTGGCAAGCTGAGGAATTGCATGGCTGTGTGTGACGTGTCCGGAAGCATGGAAGGGACTCCTATGGAGGTGTGTGTGGCTTTGGGTCTGTTGGTGTCGGAATTGAGTGAAGAGCCATGGAAAGGAAAGGTGATCACTTTCAGTCAGAACCCTCAGTTGCATTTGATTCAAGGCGAGGATCTTAGCTCCAAGTGCGAGTTTGTGACGAGGATGGACTGGGGGATGAACACTGATTTTCAAAAGGTGTTTGATCTGATTCTCCAAGTGGCTGTGAAGGGGAAGTTGAAGCCGGAGCAGATGATAAAGAGGGTGTTTGTGTTCAGCGACATGGAGTTTGATGAGGCTTCAGGGCATAGGGGATATGGATATGGGTATTATGGAAGGGAGGCTAATGAGCCCCAGAGCTGGGAGACCGATTATGAGGTGATACGTACAGAGAAAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

574

Amino Acids

65.14

Weight (kDa)

9.17

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 32 - 430 4.9e-137 Domain of unknown function (DUF2828)
DUF7788 PF25043 432 - 571 2.1e-55 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 541
Acc65I GGTACC 1 cut(s) 702
AccB1I GGYRCC 3 cut(s) 702, 988, 1031
AccB7I CCANNNNNTGG 1 cut(s) 1041
AccIII TCCGGA 1 cut(s) 1319
AciI CCGC 8 cut(s) 302, 362, 403, 522, 617, 625, 821, 1172
AclWI GGATC 2 cut(s) 756, 1464
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 2 cut(s) 1229, 1608
AcyI GRCGYC 2 cut(s) 176, 502
AfaI GTAC 5 cut(s) 162, 261, 401, 704, 1711
AfiI CCNNNNNNNGG 8 cut(s) 31, 68, 86, 699, 1041, 1400, 1683, 1684
AflIII ACRYGT 1 cut(s) 1314
AgsI TTSAA 7 cut(s) 379, 538, 769, 1108, 1448, 1517, 1564
AjiI CACGTC 3 cut(s) 424, 518, 1315
AjnI CCWGG 4 cut(s) 206, 417, 816, 1269
AjuI GAANNNNNNNTTGG 4 cut(s) 614, 646, 968, 1000
Alw21I GWGCWC 1 cut(s) 1183
Alw26I GTCTC 3 cut(s) 791, 957, 1682
AlwI GGATC 2 cut(s) 756, 1464
Ama87I CYCGRG 1 cut(s) 903
Aor13HI TCCGGA 1 cut(s) 1319
AoxI GGCC 9 cut(s) 22, 54, 210, 415, 484, 690, 814, 1068, 1161
ApeKI GCWGC 5 cut(s) 350, 614, 653, 1009, 1012
ApoI RAATTY 1 cut(s) 365
ArsI GACNNNNNNTTYG 2 cut(s) 1595, 1627
Asp700I GAANNNNTTC 1 cut(s) 896
Asp718I GGTACC 1 cut(s) 702
AspLEI GCGC 2 cut(s) 74, 307
AspS9I GGNCC 4 cut(s) 23, 55, 210, 1267
AsuC2I CCSGG 2 cut(s) 716, 1156
AsuHPI GGTGA 5 cut(s) 28, 892, 1250, 1420, 1714
AvaI CYCGRG 1 cut(s) 903
AvaII GGWCC 1 cut(s) 1267
AxyI CCTNAGG 1 cut(s) 591
BaeI ACNNNNGTAYC 2 cut(s) 694, 727
BanI GGYRCC 3 cut(s) 702, 988, 1031
BanII GRGCYC 1 cut(s) 1677
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 1183
BbvCI CCTCAGC 2 cut(s) 971, 1289
BbvI GCAGC 5 cut(s) 337, 601, 665, 999, 1021
BccI CCATC 7 cut(s) 53, 79, 436, 604, 673, 1217, 1483
BceAI ACGGC 2 cut(s) 315, 677
BcgI CGANNNNNNTGC 2 cut(s) 866, 900
BciT130I CCWGG 4 cut(s) 208, 419, 818, 1271
BciVI GTATCC 1 cut(s) 160
BclI TGATCA 1 cut(s) 1410
BcnI CCSGG 2 cut(s) 716, 1156
BcoDI GTCTC 3 cut(s) 791, 957, 1682
BfaI CTAG 3 cut(s) 12, 338, 410
BfoI RGCGCY 1 cut(s) 308
BfuAI ACCTGC 1 cut(s) 541
BfuI GTATCC 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 1160
BisI GCNGC 8 cut(s) 303, 351, 615, 654, 822, 1010, 1013, 1173
BlsI GCNGC 8 cut(s) 304, 352, 616, 655, 823, 1011, 1014, 1174
Bme1390I CCNGG 6 cut(s) 208, 419, 716, 818, 1156, 1271
Bme18I GGWCC 1 cut(s) 1267
BmeT110I CYCGRG 1 cut(s) 903
BmgBI CACGTC 3 cut(s) 424, 518, 1315
BmgT120I GGNCC 4 cut(s) 23, 55, 210, 1267
BmiI GGNNCC 4 cut(s) 6, 704, 990, 1033
BmrFI CCNGG 6 cut(s) 208, 419, 716, 818, 1156, 1271
BmrI ACTGGG 1 cut(s) 1504
BmuI ACTGGG 1 cut(s) 1504
BpiI GAAGAC 1 cut(s) 8
BpmI CTGGAG 1 cut(s) 683
Bpu10I CCTNAGC 2 cut(s) 971, 1289
BpuEI CTTGAG 1 cut(s) 773
BpuMI CCSGG 2 cut(s) 716, 1156
BsaAI YACGTR 2 cut(s) 263, 1709
BsaHI GRCGYC 2 cut(s) 176, 502
BsaI GGTCTC 2 cut(s) 957, 1682
BsaJI CCNNGG 3 cut(s) 207, 1270, 1394
BsaWI WCCGGW 2 cut(s) 163, 1319
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 8 cut(s) 31, 68, 86, 699, 1041, 1400, 1683, 1684
Bse118I RCCGGY 3 cut(s) 52, 576, 966
Bse1I ACTGG 1 cut(s) 1499
Bse21I CCTNAGG 1 cut(s) 591
Bse3DI GCAATG 2 cut(s) 866, 882
BseAI TCCGGA 1 cut(s) 1319
BseBI CCWGG 4 cut(s) 208, 419, 818, 1271
BseDI CCNNGG 3 cut(s) 207, 1270, 1394
BseGI GGATG 6 cut(s) 45, 601, 1150, 1228, 1494, 1506
BseLI CCNNNNNNNGG 8 cut(s) 31, 68, 86, 699, 1041, 1400, 1683, 1684
BseMI GCAATG 2 cut(s) 866, 882
BseMII CTCAG 5 cut(s) 242, 962, 1086, 1280, 1445
BseNI ACTGG 1 cut(s) 1499
BseRI GAGGAG 1 cut(s) 950
BseXI GCAGC 5 cut(s) 337, 601, 665, 999, 1021
BseYI CCCAGC 1 cut(s) 1683
BsgI GTGCAG 1 cut(s) 672
BshFI GGCC 9 cut(s) 24, 56, 212, 417, 486, 692, 816, 1070, 1163
BshNI GGYRCC 3 cut(s) 702, 988, 1031
BsiHKAI GWGCWC 1 cut(s) 1183
BsiHKCI CYCGRG 1 cut(s) 903
BsiWI CGTACG 1 cut(s) 259
BslFI GGGAC 1 cut(s) 1348
BslI CCNNNNNNNGG 8 cut(s) 31, 68, 86, 699, 1041, 1400, 1683, 1684
BsmAI GTCTC 3 cut(s) 791, 957, 1682
BsmFI GGGAC 1 cut(s) 1348
BsnI GGCC 9 cut(s) 24, 56, 212, 417, 486, 692, 816, 1070, 1163
Bso31I GGTCTC 2 cut(s) 957, 1682
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 2 cut(s) 1183, 1677
Bsp13I TCCGGA 1 cut(s) 1319
Bsp143I GATC 7 cut(s) 142, 748, 856, 1197, 1410, 1456, 1528
Bsp19I CCATGG 1 cut(s) 1394
BspACI CCGC 8 cut(s) 302, 362, 403, 522, 617, 625, 821, 1172
BspANI GGCC 9 cut(s) 24, 56, 212, 417, 486, 692, 816, 1070, 1163
BspCNI CTCAG 5 cut(s) 243, 963, 1085, 1281, 1444
BspEI TCCGGA 1 cut(s) 1319
BspLI GGNNCC 4 cut(s) 6, 704, 990, 1033
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 2 cut(s) 756, 1464
BspQI GCTCTTC 1 cut(s) 1383
BspT107I GGYRCC 3 cut(s) 702, 988, 1031
BspTNI GGTCTC 2 cut(s) 957, 1682
BsrDI GCAATG 2 cut(s) 866, 882
BsrFI RCCGGY 3 cut(s) 52, 576, 966
BsrI ACTGG 1 cut(s) 1499
BssAI RCCGGY 3 cut(s) 52, 576, 966
BssECI CCNNGG 3 cut(s) 207, 1270, 1394
BssMI GATC 7 cut(s) 142, 748, 856, 1197, 1410, 1456, 1528
BssNI GRCGYC 2 cut(s) 176, 502
BssT1I CCWWGG 1 cut(s) 1394
Bst2UI CCWGG 4 cut(s) 208, 419, 818, 1271
Bst6I CTCTTC 4 cut(s) 152, 1113, 1247, 1383
BstACI GRCGYC 2 cut(s) 176, 502
BstAPI GCANNNNNTGC 3 cut(s) 135, 586, 947
BstBAI YACGTR 2 cut(s) 263, 1709
BstC8I GCNNGC 3 cut(s) 343, 578, 1286
BstDEI CTNAG 7 cut(s) 251, 591, 971, 1072, 1289, 1431, 1460
BstDSI CCRYGG 1 cut(s) 1394
BstEII GGTNACC 1 cut(s) 34
BstF5I GGATG 6 cut(s) 45, 601, 1150, 1228, 1494, 1506
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 2 cut(s) 74, 307
BstKTI GATC 7 cut(s) 145, 751, 859, 1200, 1413, 1459, 1531
BstMAI GTCTC 3 cut(s) 791, 957, 1682
BstMBI GATC 7 cut(s) 142, 748, 856, 1197, 1410, 1456, 1528
BstNI CCWGG 4 cut(s) 208, 419, 818, 1271
BstPI GGTNACC 1 cut(s) 34
BstSCI CCNGG 6 cut(s) 206, 417, 714, 816, 1154, 1269
BstSNI TACGTA 1 cut(s) 1709
BstV1I GCAGC 5 cut(s) 337, 601, 665, 999, 1021
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 2 cut(s) 748, 1456
BstYI RGATCY 2 cut(s) 748, 1456
Bsu36I CCTNAGG 1 cut(s) 591
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 9 cut(s) 24, 56, 212, 417, 486, 692, 816, 1070, 1163
BtgI CCRYGG 1 cut(s) 1394
BtgZI GCGATG 1 cut(s) 692
BtrI CACGTC 3 cut(s) 424, 518, 1315
BtsCI GGATG 6 cut(s) 45, 601, 1150, 1228, 1494, 1506
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 3 cut(s) 458, 1253, 1506
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 3 cut(s) 343, 578, 1286
CfoI GCGC 2 cut(s) 74, 307
Cfr10I RCCGGY 3 cut(s) 52, 576, 966
Cfr13I GGNCC 4 cut(s) 23, 55, 210, 1267
CseI GACGC 3 cut(s) 165, 342, 510
Csp6I GTAC 5 cut(s) 161, 260, 400, 703, 1710
CviAII CATG 7 cut(s) 734, 1081, 1193, 1300, 1327, 1395, 1606
CviQI GTAC 5 cut(s) 161, 260, 400, 703, 1710
DdeI CTNAG 7 cut(s) 251, 591, 971, 1072, 1289, 1431, 1460
DpnI GATC 7 cut(s) 144, 750, 858, 1199, 1412, 1458, 1530
DpnII GATC 7 cut(s) 142, 748, 856, 1197, 1410, 1456, 1528
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 4 cut(s) 152, 1113, 1247, 1383
EarI CTCTTC 4 cut(s) 152, 1113, 1247, 1383
EciI GGCGGA 1 cut(s) 377
Eco105I TACGTA 1 cut(s) 1709
Eco130I CCWWGG 1 cut(s) 1394
Eco147I AGGCCT 1 cut(s) 816
Eco24I GRGCYC 1 cut(s) 1677
Eco31I GGTCTC 2 cut(s) 957, 1682
Eco47I GGWCC 1 cut(s) 1267
Eco57I CTGAAG 2 cut(s) 1229, 1608
Eco81I CCTNAGG 1 cut(s) 591
Eco88I CYCGRG 1 cut(s) 903
Eco91I GGTNACC 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 1267
EcoO65I GGTNACC 1 cut(s) 34
EcoRI GAATTC 1 cut(s) 365
EcoRII CCWGG 4 cut(s) 206, 417, 816, 1269
EcoT14I CCWWGG 1 cut(s) 1394
EcoT38I GRGCYC 1 cut(s) 1677
ErhI CCWWGG 1 cut(s) 1394
FaeI CATG 7 cut(s) 737, 1084, 1196, 1303, 1330, 1398, 1609
FaqI GGGAC 1 cut(s) 1348
FatI CATG 7 cut(s) 733, 1080, 1192, 1299, 1326, 1394, 1605
FbaI TGATCA 1 cut(s) 1410
Fnu4HI GCNGC 8 cut(s) 303, 351, 615, 654, 822, 1010, 1013, 1173
FokI GGATG 6 cut(s) 32, 608, 1157, 1235, 1501, 1513
FriOI GRGCYC 1 cut(s) 1677
Fsp4HI GCNGC 8 cut(s) 303, 351, 615, 654, 822, 1010, 1013, 1173
FspBI CTAG 3 cut(s) 12, 338, 410
GlaI GCGC 2 cut(s) 73, 306
GluI GCNGC 8 cut(s) 303, 351, 615, 654, 822, 1010, 1013, 1173
GsaI CCCAGC 1 cut(s) 1687
GsuI CTGGAG 1 cut(s) 683
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 9 cut(s) 24, 56, 212, 417, 486, 692, 816, 1070, 1163
HgaI GACGC 3 cut(s) 165, 342, 510
HhaI GCGC 2 cut(s) 74, 307
Hin1I GRCGYC 2 cut(s) 176, 502
Hin1II CATG 7 cut(s) 737, 1084, 1196, 1303, 1330, 1398, 1609
Hin6I GCGC 2 cut(s) 72, 305
HinP1I GCGC 2 cut(s) 72, 305
HindIII AAGCTT 1 cut(s) 1085
HphI GGTGA 5 cut(s) 28, 892, 1250, 1420, 1714
Hpy188III TCNNGA 6 cut(s) 118, 410, 790, 917, 1105, 1320
HpyCH4IV ACGT 5 cut(s) 262, 423, 517, 1314, 1708
HpyCH4V TGCA 8 cut(s) 246, 345, 653, 698, 733, 1009, 1299, 1438
HpyF3I CTNAG 7 cut(s) 251, 591, 971, 1072, 1289, 1431, 1460
HpySE526I ACGT 5 cut(s) 262, 423, 517, 1314, 1708
Hsp92I GRCGYC 2 cut(s) 176, 502
Hsp92II CATG 7 cut(s) 737, 1084, 1196, 1303, 1330, 1398, 1609
HspAI GCGC 2 cut(s) 72, 305
Kpn2I TCCGGA 1 cut(s) 1319
KpnI GGTACC 1 cut(s) 706
KroI GCCGGC 1 cut(s) 576
KroNI GCCGGC 1 cut(s) 578
Ksp22I TGATCA 1 cut(s) 1410
Kzo9I GATC 7 cut(s) 142, 748, 856, 1197, 1410, 1456, 1528
LguI GCTCTTC 1 cut(s) 1383
LmnI GCTCC 5 cut(s) 10, 201, 1276, 1469, 1570
Lsp1109I GCAGC 5 cut(s) 337, 601, 665, 999, 1021
MaeI CTAG 3 cut(s) 12, 338, 410
MaeII ACGT 5 cut(s) 262, 423, 517, 1314, 1708
MaeIII GTNAC 5 cut(s) 34, 371, 710, 1310, 1480
MalI GATC 7 cut(s) 144, 750, 858, 1199, 1412, 1458, 1530
MboI GATC 7 cut(s) 142, 748, 856, 1197, 1410, 1456, 1528
MflI RGATCY 2 cut(s) 748, 1456
MhlI GDGCHC 2 cut(s) 1183, 1677
MluCI AATT 6 cut(s) 100, 365, 533, 908, 1294, 1379
MlyI GAGTC 4 cut(s) 59, 793, 966, 1330
MmeI TCCRAC 2 cut(s) 535, 1356
MroI TCCGGA 1 cut(s) 1319
MroNI GCCGGC 1 cut(s) 576
MroXI GAANNNNTTC 1 cut(s) 896
MseI TTAA 1 cut(s) 1128
MslI CAYNNNNRTG 1 cut(s) 1304
MspA1I CMGCKG 1 cut(s) 1012
MspR9I CCNGG 6 cut(s) 208, 419, 716, 818, 1156, 1271
MvaI CCWGG 4 cut(s) 208, 419, 818, 1271
NaeI GCCGGC 1 cut(s) 578
NciI CCSGG 2 cut(s) 716, 1156
NcoI CCATGG 1 cut(s) 1394
NdeII GATC 7 cut(s) 142, 748, 856, 1197, 1410, 1456, 1528
NgoMIV GCCGGC 1 cut(s) 576
NlaIII CATG 7 cut(s) 737, 1084, 1196, 1303, 1330, 1398, 1609
NlaIV GGNNCC 4 cut(s) 6, 704, 990, 1033
NmeAIII GCCGAG 1 cut(s) 512
NmuCI GTSAC 4 cut(s) 34, 710, 1310, 1480
PceI AGGCCT 1 cut(s) 816
PciSI GCTCTTC 1 cut(s) 1383
PdiI GCCGGC 1 cut(s) 578
PdmI GAANNNNTTC 1 cut(s) 896
PfeI GAWTC 6 cut(s) 394, 726, 845, 1051, 1444, 1534
Pfl23II CGTACG 1 cut(s) 259
PflMI CCANNNNNTGG 1 cut(s) 1041
PkrI GCNGC 8 cut(s) 304, 352, 616, 655, 823, 1011, 1014, 1174
PleI GAGTC 4 cut(s) 59, 792, 965, 1330
PpsI GAGTC 4 cut(s) 59, 792, 965, 1330
Ppu21I YACGTR 2 cut(s) 263, 1709
PpuMI RGGWCCY 1 cut(s) 1267
Psp5II RGGWCCY 1 cut(s) 1267
Psp6I CCWGG 4 cut(s) 206, 417, 816, 1269
PspEI GGTNACC 1 cut(s) 34
PspFI CCCAGC 1 cut(s) 1683
PspGI CCWGG 4 cut(s) 206, 417, 816, 1269
PspLI CGTACG 1 cut(s) 259
PspN4I GGNNCC 4 cut(s) 6, 704, 990, 1033
PspPI GGNCC 4 cut(s) 23, 55, 210, 1267
PspPPI RGGWCCY 1 cut(s) 1267
PsuI RGATCY 2 cut(s) 748, 1456
PvuII CAGCTG 1 cut(s) 1012
RsaI GTAC 5 cut(s) 162, 261, 401, 704, 1711
RsaNI GTAC 5 cut(s) 161, 260, 400, 703, 1710
RseI CAYNNNNRTG 1 cut(s) 1304
SapI GCTCTTC 1 cut(s) 1383
SaqAI TTAA 1 cut(s) 1128
SatI GCNGC 8 cut(s) 303, 351, 615, 654, 822, 1010, 1013, 1173
Sau3AI GATC 7 cut(s) 142, 748, 856, 1197, 1410, 1456, 1528
Sau96I GGNCC 4 cut(s) 23, 55, 210, 1267
SchI GAGTC 4 cut(s) 59, 793, 966, 1330
ScrFI CCNGG 6 cut(s) 208, 419, 716, 818, 1156, 1271
SduI GDGCHC 2 cut(s) 1183, 1677
SinI GGWCC 1 cut(s) 1267
SmiMI CAYNNNNRTG 1 cut(s) 1304
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
SnaBI TACGTA 1 cut(s) 1709
Sse9I AATT 6 cut(s) 100, 365, 533, 908, 1294, 1379
SseBI AGGCCT 1 cut(s) 816
SsiI CCGC 8 cut(s) 302, 362, 403, 522, 617, 625, 821, 1172
SspMI CTAG 3 cut(s) 12, 338, 410
StuI AGGCCT 1 cut(s) 816
StyD4I CCNGG 6 cut(s) 206, 417, 714, 816, 1154, 1269
StyI CCWWGG 1 cut(s) 1394
TaiI ACGT 5 cut(s) 265, 426, 520, 1317, 1711
TaqI TCGA 1 cut(s) 859
TaqII GACCGA 2 cut(s) 110, 1706
TasI AATT 6 cut(s) 100, 365, 533, 908, 1294, 1379
TauI GCSGC 3 cut(s) 305, 824, 1175
TfiI GAWTC 6 cut(s) 394, 726, 845, 1051, 1444, 1534
Tru1I TTAA 1 cut(s) 1128
Tru9I TTAA 1 cut(s) 1128
TscAI CASTG 3 cut(s) 458, 1253, 1513
TseFI GTSAC 4 cut(s) 34, 710, 1310, 1480
TseI GCWGC 5 cut(s) 350, 614, 653, 1009, 1012
Tsp45I GTSAC 4 cut(s) 34, 710, 1310, 1480
TspDTI ATGAA 4 cut(s) 939, 1097, 1131, 1517
TspGWI ACGGA 1 cut(s) 478
TspRI CASTG 3 cut(s) 458, 1253, 1513
Van91I CCANNNNNTGG 1 cut(s) 1041
VpaK11BI GGWCC 1 cut(s) 1267
XapI RAATTY 1 cut(s) 365
XbaI TCTAGA 1 cut(s) 409
XmnI GAANNNNTTC 1 cut(s) 896
XspI CTAG 3 cut(s) 12, 338, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.