Rmu_sc0009898.1_g000002

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009898.1
OG0000255
Physical Location & Seq
Forward (+)
7465 .. 9680
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009898.1_g000002.1.cds

Sequence Viewer

Length: 1857 bp
ctggcctgggcccacagtcccctaaccactctaaaactcatctgcaacctccgaggtgtacgtggcacagggaagtccgacaaggaccgtttctacactgcggcgctttggctccacaagtaccaccccaaaaccctaccctgcaatctagcctccattgccgagtttgggtattttaaagattttcccgagattctctaccggctaggcctccggccaagggtcaagcgagttgcgaaaccgacaccgaaatcggccagcgctgtccgcaggaacgtgccgagagagctaaaggtgaagagggaaatggagagggtgaaactagaaaaggaaaaagccagcatggcgaggaaagagaagaagatcgccgccgccgggaaggcttttttccggtacgactttgacccggattaccagttcttgcacaactgggtctcggatcttttcgccgagtgcctgaaatccgatctcaacaatttgaagactagacagtacaagaagataagccttgcagccaagtggtgtccttcgctggactcctcattcgacaaagccactctactatgtgaaaacattgccaggagggttttccagcgagaatcgtcattggaatataaaggaattgaggatgctcattatgcttacagagtcagagaccggctgaggaaggaggttttggtcctactgaggaaggttatggaattaccagaggtttatatgggtgctaataattggggggctcttccttacagtagagtggcctctgtagccatgaagctttacaaagggaaatttgttaagcatgataaggagcggttcatccaatacttggaggatgtgagagaaggcaaggccactattgcggctggtgcattgcttcctcatgaggttataaagtctctggatgacgacgacgacggtgggctggtgagtgagcttcagtggaagaggatgttggatgatttgtcaaagctagggaagctcactaattgcttggctgtgtgtgacgtgtcggggagtatgaatgggactcctatggaggtgtctgttgctttggggatggtggtggctgaattgagcgaagagcagtggaaagggaaggtgatcactttcaatagcaatcctcagctgcatgtgatacaaggcaagagtctcaaggccaagagcgagtttgtgaggaaaatggattggggagccaacactgattttcagaaggtgtttaatttgatactagaagtggctgtgaaggggaagctgaagccagagcagatgataaagaaggtgtttgtgttcagcgacatggaatttgatcaggcttcgctgcatagcagatatggatttgggtatggaaggggggttagggggcgcgggagatgtggatttgggaattatggaagggagaatattgaaactcaaaagggatgggagactgattatgaggtgatacaaaggaagtttagggagagagggtatggggatgtggtgccacagatagtgttttggaatttgaggcactctaaatctacaccggtgaccgagtcacaaaatggggtggcgctgctcagtggcttctccaagaatttgctgaagttgttcttgggtaaggatgtggtgactcgcccggaccaaaccatggaagaggccatccctggcaaagagtatcagaatttagttctgggactagggatgacaaaaatccccagcggggcggagctccattggatatccgcccctaatggggggagaattcggagacaaatggggaatggggatggggatccccaatccccgctatctaagattggggatggggcggggatggtattgtcatccccatccccaaacccgccccaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

618

Amino Acids

69.89

Weight (kDa)

9.56

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 893
AccB1I GGYRCC 1 cut(s) 1483
AccB7I CCANNNNNTGG 2 cut(s) 829, 1633
AccBSI CCGCTC 1 cut(s) 814
AccII CGCG 1 cut(s) 1368
AclWI GGATC 3 cut(s) 447, 1772, 1785
AcoI YGGCCR 2 cut(s) 215, 255
AcsI RAATTY 6 cut(s) 791, 1304, 1504, 1579, 1666, 1746
AcuI CTGAAG 3 cut(s) 923, 1277, 1607
AfaI GTAC 4 cut(s) 60, 122, 395, 494
AfeI AGCGCT 1 cut(s) 262
AfiI CCNNNNNNNGG 9 cut(s) 168, 220, 375, 829, 1633, 1705, 1737, 1738, 1739
AflIII ACRYGT 1 cut(s) 1008
AgeI ACCGGT 1 cut(s) 1528
AgsI TTSAA 3 cut(s) 481, 1114, 1409
AjiI CACGTC 1 cut(s) 1009
AjnI CCWGG 3 cut(s) 5, 578, 1648
AjuI GAANNNNNNNTTGG 6 cut(s) 659, 691, 938, 970, 1580, 1612
AloI GAACNNNNNNTCC 2 cut(s) 401, 433
AluBI AGCT 8 cut(s) 289, 778, 937, 973, 982, 1129, 1255, 1714
AluI AGCT 8 cut(s) 289, 778, 937, 973, 982, 1129, 1255, 1714
Alw21I GWGCWC 1 cut(s) 1716
Alw26I GTCTC 6 cut(s) 439, 648, 903, 1157, 1421, 1747
AlwI GGATC 3 cut(s) 447, 1772, 1785
Ama87I CYCGRG 1 cut(s) 188
Aor51HI AGCGCT 1 cut(s) 262
AoxI GGCC 9 cut(s) 3, 9, 208, 215, 255, 759, 852, 1158, 1641
ApaI GGGCCC 1 cut(s) 13
ApeKI GCWGC 4 cut(s) 512, 1129, 1321, 1558
ApoI RAATTY 6 cut(s) 791, 1304, 1504, 1579, 1666, 1746
ArsI GACNNNNNNTTYG 4 cut(s) 527, 559, 1289, 1321
AsiGI ACCGGT 1 cut(s) 1528
Asp700I GAANNNNTTC 1 cut(s) 1592
AspLEI GCGC 4 cut(s) 106, 263, 1368, 1558
AspS9I GGNCC 5 cut(s) 9, 10, 85, 679, 1624
AsuC2I CCSGG 3 cut(s) 376, 407, 1622
AsuHPI GGTGA 7 cut(s) 307, 328, 940, 1114, 1453, 1543, 1624
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 3 cut(s) 85, 679, 1624
BaeGI GKGCMC 1 cut(s) 13
BamHI GGATCC 1 cut(s) 1777
BanI GGYRCC 1 cut(s) 1483
BanII GRGCYC 3 cut(s) 13, 742, 1716
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 1716
BbvCI CCTCAGC 2 cut(s) 662, 1125
BbvI GCAGC 4 cut(s) 524, 1116, 1308, 1545
BccI CCATC 7 cut(s) 1054, 1416, 1652, 1766, 1802, 1813, 1843
BciT130I CCWGG 3 cut(s) 7, 580, 1650
BclI TGATCA 2 cut(s) 1104, 1309
BcnI CCSGG 3 cut(s) 376, 407, 1622
BcoDI GTCTC 6 cut(s) 439, 648, 903, 1157, 1421, 1747
BfaI CTAG 7 cut(s) 149, 206, 323, 486, 974, 1232, 1682
BfmI CTRYAG 1 cut(s) 765
BfoI RGCGCY 3 cut(s) 107, 264, 1559
BglI GCCNNNNNGGC 2 cut(s) 344, 380
BisI GCNGC 8 cut(s) 102, 369, 372, 513, 864, 1130, 1322, 1559
BlsI GCNGC 8 cut(s) 103, 370, 373, 514, 865, 1131, 1323, 1560
Bme1390I CCNGG 6 cut(s) 7, 376, 407, 580, 1622, 1650
Bme18I GGWCC 3 cut(s) 85, 679, 1624
BmeT110I CYCGRG 1 cut(s) 188
BmgBI CACGTC 1 cut(s) 1009
BmgT120I GGNCC 5 cut(s) 9, 10, 85, 679, 1624
BmiI GGNNCC 5 cut(s) 11, 113, 1195, 1485, 1779
BmrFI CCNGG 6 cut(s) 7, 376, 407, 580, 1622, 1650
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 1 cut(s) 619
BmuI ACTGGG 1 cut(s) 439
BpiI GAAGAC 1 cut(s) 488
Bpu10I CCTNAGC 2 cut(s) 662, 1125
BpuEI CTTGAG 1 cut(s) 1139
BpuMI CCSGG 3 cut(s) 376, 407, 1622
BsaAI YACGTR 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 1776
BsaI GGTCTC 2 cut(s) 439, 648
BsaJI CCNNGG 5 cut(s) 6, 52, 218, 1632, 1648
BsaWI WCCGGW 2 cut(s) 390, 1528
BsaXI ACNNNNNCTCC 2 cut(s) 1454, 1484
Bsc4I CCNNNNNNNGG 9 cut(s) 168, 220, 375, 829, 1633, 1705, 1737, 1738, 1739
Bse118I RCCGGY 3 cut(s) 201, 657, 1528
Bse1I ACTGG 2 cut(s) 415, 434
Bse3DI GCAATG 3 cut(s) 156, 573, 872
Bse8I GATNNNNATC 1 cut(s) 1776
BseBI CCWGG 3 cut(s) 7, 580, 1650
BseDI CCNNGG 5 cut(s) 6, 52, 218, 1632, 1648
BseJI GATNNNNATC 1 cut(s) 1776
BseLI CCNNNNNNNGG 9 cut(s) 168, 220, 375, 829, 1633, 1705, 1737, 1738, 1739
BseMI GCAATG 3 cut(s) 156, 573, 872
BseMII CTCAG 4 cut(s) 653, 677, 1139, 1576
BseNI ACTGG 2 cut(s) 415, 434
BseRI GAGGAG 1 cut(s) 529
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 4 cut(s) 524, 1116, 1308, 1545
BseYI CCCAGC 1 cut(s) 1700
Bsh1236I CGCG 1 cut(s) 1368
BshFI GGCC 9 cut(s) 5, 11, 210, 217, 257, 761, 854, 1160, 1643
BshNI GGYRCC 1 cut(s) 1483
BshTI ACCGGT 1 cut(s) 1528
BsiHKAI GWGCWC 1 cut(s) 1716
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 8 cut(s) 202, 214, 375, 391, 407, 658, 1529, 1622
BslFI GGGAC 3 cut(s) 3, 1042, 1692
BslI CCNNNNNNNGG 9 cut(s) 168, 220, 375, 829, 1633, 1705, 1737, 1738, 1739
BsmAI GTCTC 6 cut(s) 439, 648, 903, 1157, 1421, 1747
BsmFI GGGAC 3 cut(s) 3, 1042, 1692
BsnI GGCC 9 cut(s) 5, 11, 210, 217, 257, 761, 854, 1160, 1643
Bso31I GGTCTC 2 cut(s) 439, 648
BsoBI CYCGRG 1 cut(s) 188
Bsp120I GGGCCC 1 cut(s) 9
Bsp1286I GDGCHC 3 cut(s) 13, 742, 1716
Bsp143I GATC 6 cut(s) 363, 439, 466, 1104, 1309, 1777
Bsp19I CCATGG 1 cut(s) 1632
BspANI GGCC 9 cut(s) 5, 11, 210, 217, 257, 761, 854, 1160, 1643
BspCNI CTCAG 4 cut(s) 654, 678, 1138, 1575
BspFNI CGCG 1 cut(s) 1368
BspHI TCATGA 1 cut(s) 883
BspLI GGNNCC 5 cut(s) 11, 113, 1195, 1485, 1779
BspPI GGATC 3 cut(s) 447, 1772, 1785
BspQI GCTCTTC 2 cut(s) 747, 1077
BspT107I GGYRCC 1 cut(s) 1483
BspTNI GGTCTC 2 cut(s) 439, 648
BsrBI CCGCTC 1 cut(s) 814
BsrDI GCAATG 3 cut(s) 156, 573, 872
BsrFI RCCGGY 3 cut(s) 201, 657, 1528
BsrI ACTGG 2 cut(s) 415, 434
BssAI RCCGGY 3 cut(s) 201, 657, 1528
BssECI CCNNGG 5 cut(s) 6, 52, 218, 1632, 1648
BssMI GATC 6 cut(s) 363, 439, 466, 1104, 1309, 1777
BssT1I CCWWGG 2 cut(s) 218, 1632
Bst2UI CCWGG 3 cut(s) 7, 580, 1650
Bst4CI ACNGT 5 cut(s) 17, 89, 492, 752, 920
Bst6I CTCTTC 5 cut(s) 293, 747, 941, 1077, 1632
BstBAI YACGTR 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 259, 340
BstDEI CTNAG 5 cut(s) 662, 686, 1125, 1562, 1797
BstDSI CCRYGG 1 cut(s) 1632
BstEII GGTNACC 1 cut(s) 1531
BstFNI CGCG 1 cut(s) 1368
BstH2I RGCGCY 3 cut(s) 107, 264, 1559
BstHHI GCGC 4 cut(s) 106, 263, 1368, 1558
BstKTI GATC 6 cut(s) 366, 442, 469, 1107, 1312, 1780
BstMAI GTCTC 6 cut(s) 439, 648, 903, 1157, 1421, 1747
BstMBI GATC 6 cut(s) 363, 439, 466, 1104, 1309, 1777
BstNI CCWGG 3 cut(s) 7, 580, 1650
BstNSI RCATGY 1 cut(s) 1136
BstPI GGTNACC 1 cut(s) 1531
BstSCI CCNGG 6 cut(s) 5, 374, 405, 578, 1620, 1648
BstSFI CTRYAG 1 cut(s) 765
BstSLI GKGCMC 1 cut(s) 13
BstUI CGCG 1 cut(s) 1368
BstV1I GCAGC 4 cut(s) 524, 1116, 1308, 1545
BstV2I GAAGAC 1 cut(s) 488
BstX2I RGATCY 2 cut(s) 439, 1777
BstYI RGATCY 2 cut(s) 439, 1777
BsuRI GGCC 9 cut(s) 5, 11, 210, 217, 257, 761, 854, 1160, 1643
BtgI CCRYGG 1 cut(s) 1632
BtrI CACGTC 1 cut(s) 1009
BtsI GCAGTG 2 cut(s) 96, 1094
BtsIMutI CAGTG 5 cut(s) 96, 947, 1094, 1200, 1570
Cac8I GCNNGC 2 cut(s) 259, 340
CciI TCATGA 1 cut(s) 883
CfoI GCGC 4 cut(s) 106, 263, 1368, 1558
Cfr10I RCCGGY 3 cut(s) 201, 657, 1528
Cfr13I GGNCC 5 cut(s) 9, 10, 85, 679, 1624
Csp6I GTAC 4 cut(s) 59, 121, 394, 493
CspAI ACCGGT 1 cut(s) 1528
CviAII CATG 7 cut(s) 343, 772, 803, 884, 1133, 1300, 1633
CviQI GTAC 4 cut(s) 59, 121, 394, 493
DdeI CTNAG 5 cut(s) 662, 686, 1125, 1562, 1797
DpnI GATC 6 cut(s) 365, 441, 468, 1106, 1311, 1779
DpnII GATC 6 cut(s) 363, 439, 466, 1104, 1309, 1777
DraI TTTAAA 1 cut(s) 178
EaeI YGGCCR 2 cut(s) 215, 255
Eam1104I CTCTTC 5 cut(s) 293, 747, 941, 1077, 1632
EarI CTCTTC 5 cut(s) 293, 747, 941, 1077, 1632
EciI GGCGGA 2 cut(s) 1717, 1724
Ecl136II GAGCTC 1 cut(s) 1714
Eco130I CCWWGG 2 cut(s) 218, 1632
Eco147I AGGCCT 1 cut(s) 210
Eco24I GRGCYC 3 cut(s) 13, 742, 1716
Eco31I GGTCTC 2 cut(s) 439, 648
Eco32I GATATC 1 cut(s) 1725
Eco47I GGWCC 3 cut(s) 85, 679, 1624
Eco47III AGCGCT 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 1714
Eco57I CTGAAG 3 cut(s) 923, 1277, 1607
Eco88I CYCGRG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 1531
EcoICRI GAGCTC 1 cut(s) 1714
EcoO65I GGTNACC 1 cut(s) 1531
EcoRI GAATTC 1 cut(s) 1746
EcoRII CCWGG 3 cut(s) 5, 578, 1648
EcoRV GATATC 1 cut(s) 1725
EcoT14I CCWWGG 2 cut(s) 218, 1632
EcoT38I GRGCYC 3 cut(s) 13, 742, 1716
ErhI CCWWGG 2 cut(s) 218, 1632
FaeI CATG 7 cut(s) 346, 775, 806, 887, 1136, 1303, 1636
FalI AAGNNNNNCTT 2 cut(s) 1580, 1612
FaqI GGGAC 3 cut(s) 3, 1042, 1692
FatI CATG 7 cut(s) 342, 771, 802, 883, 1132, 1299, 1632
FauI CCCGC 5 cut(s) 1361, 1697, 1797, 1807, 1854
FbaI TGATCA 2 cut(s) 1104, 1309
Fnu4HI GCNGC 8 cut(s) 102, 369, 372, 513, 864, 1130, 1322, 1559
FriOI GRGCYC 3 cut(s) 13, 742, 1716
Fsp4HI GCNGC 8 cut(s) 102, 369, 372, 513, 864, 1130, 1322, 1559
FspBI CTAG 7 cut(s) 149, 206, 323, 486, 974, 1232, 1682
GlaI GCGC 4 cut(s) 105, 262, 1367, 1557
GluI GCNGC 8 cut(s) 102, 369, 372, 513, 864, 1130, 1322, 1559
GsaI CCCAGC 1 cut(s) 1704
HaeII RGCGCY 3 cut(s) 107, 264, 1559
HaeIII GGCC 9 cut(s) 5, 11, 210, 217, 257, 761, 854, 1160, 1643
HapII CCGG 8 cut(s) 202, 214, 375, 391, 407, 658, 1529, 1622
HhaI GCGC 4 cut(s) 106, 263, 1368, 1558
Hin1II CATG 7 cut(s) 346, 775, 806, 887, 1136, 1303, 1636
Hin6I GCGC 4 cut(s) 104, 261, 1366, 1556
HinP1I GCGC 4 cut(s) 104, 261, 1366, 1556
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 8 cut(s) 193, 536, 599, 648, 1030, 1150, 1538, 1615
HpaII CCGG 8 cut(s) 202, 214, 375, 391, 407, 658, 1529, 1622
HphI GGTGA 7 cut(s) 307, 328, 940, 1114, 1453, 1543, 1624
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 8 cut(s) 53, 79, 439, 466, 653, 1212, 1665, 1752
Hpy188III TCNNGA 3 cut(s) 188, 884, 902
Hpy8I GTNNAC 1 cut(s) 59
Hpy99I CGWCG 3 cut(s) 914, 917, 920
HpyCH4III ACNGT 5 cut(s) 17, 89, 492, 752, 920
HpyCH4IV ACGT 3 cut(s) 61, 276, 1008
HpyCH4V TGCA 7 cut(s) 45, 144, 424, 512, 872, 1132, 1324
HpyF3I CTNAG 5 cut(s) 662, 686, 1125, 1562, 1797
HpySE526I ACGT 3 cut(s) 61, 276, 1008
Hsp92II CATG 7 cut(s) 346, 775, 806, 887, 1136, 1303, 1636
HspAI GCGC 4 cut(s) 104, 261, 1366, 1556
Ksp22I TGATCA 2 cut(s) 1104, 1309
Kzo9I GATC 6 cut(s) 363, 439, 466, 1104, 1309, 1777
LguI GCTCTTC 2 cut(s) 747, 1077
LmnI GCTCC 5 cut(s) 117, 811, 1193, 1711, 1719
Lsp1109I GCAGC 4 cut(s) 524, 1116, 1308, 1545
LweI GCATC 1 cut(s) 619
MaeI CTAG 7 cut(s) 149, 206, 323, 486, 974, 1232, 1682
MaeII ACGT 3 cut(s) 61, 276, 1008
MaeIII GTNAC 4 cut(s) 1004, 1531, 1539, 1612
MalI GATC 6 cut(s) 365, 441, 468, 1106, 1311, 1779
MbiI CCGCTC 1 cut(s) 814
MboI GATC 6 cut(s) 363, 439, 466, 1104, 1309, 1777
MboII GAAGA 9 cut(s) 310, 370, 373, 493, 511, 734, 958, 1094, 1649
MflI RGATCY 2 cut(s) 439, 1777
MhlI GDGCHC 3 cut(s) 13, 742, 1716
MlyI GAGTC 6 cut(s) 530, 657, 1024, 1159, 1547, 1609
MmeI TCCRAC 2 cut(s) 102, 936
MroXI GAANNNNTTC 1 cut(s) 1592
MseI TTAA 3 cut(s) 177, 798, 1221
MspA1I CMGCKG 2 cut(s) 1129, 1704
MspI CCGG 8 cut(s) 202, 214, 375, 391, 407, 658, 1529, 1622
MspR9I CCNGG 6 cut(s) 7, 376, 407, 580, 1622, 1650
MvaI CCWGG 3 cut(s) 7, 580, 1650
MvnI CGCG 1 cut(s) 1368
NciI CCSGG 3 cut(s) 376, 407, 1622
NcoI CCATGG 1 cut(s) 1632
NdeII GATC 6 cut(s) 363, 439, 466, 1104, 1309, 1777
NlaIII CATG 7 cut(s) 346, 775, 806, 887, 1136, 1303, 1636
NlaIV GGNNCC 5 cut(s) 11, 113, 1195, 1485, 1779
NmeAIII GCCGAG 3 cut(s) 187, 306, 475
NmuCI GTSAC 4 cut(s) 1004, 1531, 1539, 1612
NspI RCATGY 1 cut(s) 1136
PagI TCATGA 1 cut(s) 883
PceI AGGCCT 1 cut(s) 210
PciSI GCTCTTC 2 cut(s) 747, 1077
PdmI GAANNNNTTC 1 cut(s) 1592
PfeI GAWTC 2 cut(s) 193, 599
PflFI GACNNNGTC 1 cut(s) 1537
PflMI CCANNNNNTGG 2 cut(s) 829, 1633
PinAI ACCGGT 1 cut(s) 1528
PkrI GCNGC 8 cut(s) 103, 370, 373, 514, 865, 1131, 1323, 1560
PleI GAGTC 6 cut(s) 530, 656, 1024, 1158, 1546, 1609
PpsI GAGTC 6 cut(s) 530, 656, 1024, 1158, 1546, 1609
Ppu21I YACGTR 1 cut(s) 62
PsiI TTATAA 1 cut(s) 893
Psp124BI GAGCTC 1 cut(s) 1716
Psp6I CCWGG 3 cut(s) 5, 578, 1648
PspEI GGTNACC 1 cut(s) 1531
PspFI CCCAGC 1 cut(s) 1700
PspGI CCWGG 3 cut(s) 5, 578, 1648
PspN4I GGNNCC 5 cut(s) 11, 113, 1195, 1485, 1779
PspOMI GGGCCC 1 cut(s) 9
PspPI GGNCC 5 cut(s) 9, 10, 85, 679, 1624
PsuI RGATCY 2 cut(s) 439, 1777
PsyI GACNNNGTC 1 cut(s) 1537
PvuII CAGCTG 1 cut(s) 1129
RsaI GTAC 4 cut(s) 60, 122, 395, 494
RsaNI GTAC 4 cut(s) 59, 121, 394, 493
SacI GAGCTC 1 cut(s) 1716
SapI GCTCTTC 2 cut(s) 747, 1077
SaqAI TTAA 3 cut(s) 177, 798, 1221
SatI GCNGC 8 cut(s) 102, 369, 372, 513, 864, 1130, 1322, 1559
Sau3AI GATC 6 cut(s) 363, 439, 466, 1104, 1309, 1777
Sau96I GGNCC 5 cut(s) 9, 10, 85, 679, 1624
SchI GAGTC 6 cut(s) 530, 657, 1024, 1159, 1547, 1609
ScrFI CCNGG 6 cut(s) 7, 376, 407, 580, 1622, 1650
SduI GDGCHC 3 cut(s) 13, 742, 1716
SfaNI GCATC 1 cut(s) 619
SfcI CTRYAG 1 cut(s) 765
SgrAI CRCCGGYG 1 cut(s) 1528
SinI GGWCC 3 cut(s) 85, 679, 1624
SmlI CTYRAG 1 cut(s) 1154
SmoI CTYRAG 1 cut(s) 1154
SseBI AGGCCT 1 cut(s) 210
SspI AATATT 1 cut(s) 1405
SspMI CTAG 7 cut(s) 149, 206, 323, 486, 974, 1232, 1682
SstI GAGCTC 1 cut(s) 1716
StuI AGGCCT 1 cut(s) 210
StyD4I CCNGG 6 cut(s) 5, 374, 405, 578, 1620, 1648
StyI CCWWGG 2 cut(s) 218, 1632
TaaI ACNGT 5 cut(s) 17, 89, 492, 752, 920
TaiI ACGT 3 cut(s) 64, 279, 1011
TaqI TCGA 1 cut(s) 546
TaqII GACCGA 1 cut(s) 1550
TatI WGTACW 1 cut(s) 492
TauI GCSGC 4 cut(s) 104, 371, 374, 866
TfiI GAWTC 2 cut(s) 193, 599
Tru1I TTAA 3 cut(s) 177, 798, 1221
Tru9I TTAA 3 cut(s) 177, 798, 1221
TscAI CASTG 5 cut(s) 103, 947, 1094, 1207, 1570
TseFI GTSAC 4 cut(s) 1004, 1531, 1539, 1612
TseI GCWGC 4 cut(s) 512, 1129, 1321, 1558
Tsp45I GTSAC 4 cut(s) 1004, 1531, 1539, 1612
TspDTI ATGAA 3 cut(s) 788, 808, 1037
TspRI CASTG 5 cut(s) 103, 947, 1094, 1207, 1570
Tth111I GACNNNGTC 1 cut(s) 1537
Van91I CCANNNNNTGG 2 cut(s) 829, 1633
VpaK11BI GGWCC 3 cut(s) 85, 679, 1624
XapI RAATTY 6 cut(s) 791, 1304, 1504, 1579, 1666, 1746
XceI RCATGY 1 cut(s) 1136
XmnI GAANNNNTTC 1 cut(s) 1592
XspI CTAG 7 cut(s) 149, 206, 323, 486, 974, 1232, 1682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.