Rmu_co8294559.1_g000001

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8294559.1
OG0000255
Physical Location & Seq
Forward (+)
1 .. 177
177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8294559.1_g000001.1.cds

Sequence Viewer

Length: 177 bp
agggactcgaaggctactcccgtgcctgggactcaaccaggagtggcgctactgagtggcttctccaagaatttgctcaagctcttcttggataatgatggggagattcgccctgacacaaccatggaagcagcaatctcgggtccagagtatcagaagctggttgtgctggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

58

Amino Acids

6.22

Weight (kDa)

4.81

Isoelectric Point (pI)

20.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 70
AfiI CCNNNNNNNGG 2 cut(s) 26, 27
AjnI CCWGG 2 cut(s) 25, 37
AluBI AGCT 2 cut(s) 82, 160
AluI AGCT 2 cut(s) 82, 160
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 1 cut(s) 70
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 139
AvaII GGWCC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 92
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BciT130I CCWGG 2 cut(s) 27, 39
BfoI RGCGCY 1 cut(s) 50
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 27, 39
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 27, 39
BpuEI CTTGAG 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 26, 123
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 27
BseBI CCWGG 2 cut(s) 27, 39
BseDI CCNNGG 2 cut(s) 26, 123
BseLI CCNNNNNNNGG 2 cut(s) 26, 27
BseMII CTCAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 139
BslFI GGGAC 2 cut(s) 17, 43
BslI CCNNNNNNNGG 2 cut(s) 26, 27
BsmFI GGGAC 2 cut(s) 17, 43
BsoBI CYCGRG 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 144
BspQI GCTCTTC 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 26, 123
BssT1I CCWWGG 1 cut(s) 123
Bst2UI CCWGG 2 cut(s) 27, 39
Bst6I CTCTTC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 53
BstDSI CCRYGG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 2 cut(s) 27, 39
BstSCI CCNGG 2 cut(s) 25, 37
BstV1I GCAGC 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 160
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 143
CviAII CATG 1 cut(s) 124
CviJI RGCY 4 cut(s) 14, 60, 82, 160
CviKI_1 RGCY 4 cut(s) 14, 60, 82, 160
DdeI CTNAG 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 143
Eco88I CYCGRG 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 25, 37
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 127
FaiI YATR 1 cut(s) 125
FalI AAGNNNNNCTT 2 cut(s) 71, 103
FaqI GGGAC 2 cut(s) 17, 43
FatI CATG 1 cut(s) 123
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
GlaI GCGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 132
HaeII RGCGCY 1 cut(s) 50
HhaI GCGC 1 cut(s) 49
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HinfI GANTC 3 cut(s) 5, 31, 106
Hpy188I TCNGA 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 47
LguI GCTCTTC 1 cut(s) 89
LpnPI CCDG 8 cut(s) 12, 24, 39, 51, 126, 146, 155, 159
Lsp1109I GCAGC 1 cut(s) 143
MboII GAAGA 1 cut(s) 76
MluCI AATT 1 cut(s) 70
MlyI GAGTC 1 cut(s) 25
MslI CAYNNNNRTG 1 cut(s) 122
MspR9I CCNGG 2 cut(s) 27, 39
MvaI CCWGG 2 cut(s) 27, 39
MwoI GCNNNNNNNGC 1 cut(s) 166
NcoI CCATGG 1 cut(s) 123
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 25, 37
PspGI CCWGG 2 cut(s) 25, 37
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 143
PstNI CAGNNNCTG 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 89
SatI GCNGC 1 cut(s) 132
Sau96I GGNCC 1 cut(s) 143
SchI GAGTC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 27, 39
SetI ASST 2 cut(s) 84, 162
SinI GGWCC 1 cut(s) 143
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
Sse9I AATT 1 cut(s) 70
StyD4I CCNGG 2 cut(s) 25, 37
StyI CCWWGG 1 cut(s) 123
TaqI TCGA 1 cut(s) 8
TasI AATT 1 cut(s) 70
TfiI GAWTC 1 cut(s) 106
TseI GCWGC 1 cut(s) 131
VpaK11BI GGWCC 1 cut(s) 143
XapI RAATTY 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.