MD06G1162500.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000255
Physical Location & Seq
Forward (+)
30311696 .. 30313483
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1162500.v1.1.491

Sequence Viewer

Length: 1788 bp
ATGCATGGCAACAAAGTTTCACAACTCGCAAAAGGACTAATAGCTCCTAAGTATACAACTCTTGTCGATCCTCCACCTCCGGAGCTCAAACTACCCACACATACTTTCTCCAGAGCCAATTTCAATTTCGACAATGGGAAACCCAATACAACATTCATAAATCCAATCCCGTTGATTGGCCTGATTGCCGGCTTGTTTAGTACCGGTAACCCCTGTGTTGATCTCTTTTTCAACGTGATCAAGCCGGAGAAAGCAAGTCCGGCTGAGGTGGAGGCTACCTGTATTTATTTGAAACAACTGCTGCCGCTGGCCTGGTCGCACAATCCGGTAACCACTCTCAAACTCATCTGTAATCTACGAGGTGAAAAATCCTATTTGGAAGCATTTGACACGGCCGCGTATTGGCTCCACCACAACCACCCCAAGACCCTATTGCGCAGCATCCCTTCTATTGCTGTGTCGTTTGGGTGTTTTATTGATCCTGTCGATATTTTGTACTTCCTTCTAGAAGGCCGGGAGAGGAGGAGGGAAAATGAAGAAGAGACAGATGCTGGTAGCGGTAGTGCTCAACAGAAAACCCTAGCAGAAATGACGAAGATGTTTACTGAGAGGTATGAGCGTGACCCGAATTACAAGTTGTTACACGATAGGGTTACAGATGTTTATGTGGAACAGTTGAACTTTGGTATGGAAATATTGAAGCGAAAATTTAAGCAATCGGATATTGATGATGATGATCGGTACTCCTTGGCCTATGAGATAACTGACGCAGCTGGCTGTTGCACCATGGACACCAAAACCATCAATGCCACTTTGATATGTGAAAGCATTGCGAGGAAGTTTTTTCCCCGAGAATCATATCCGGAATATCAAGGCATTGATGACACCCAATACGCTAAAAAAATTGAAGGTCGACTCAGGAAGGAGGTTTTGGTGCCCTTGGAGAAGGCCGGCTATTGTGGACGCCCAAATAAGCAAGGAAATCCCTGCGAGATTGAGACGTATCTGGAGGAGGTGAAAGCAGACAAGTCCAAGATTGACCCCGGTGCTTTGCTTCCACATCATATCATGGCCTTTGAGGATCATCCCAACGTTGGGGAAGTGGCTGAGCTTCAATGGAAAACAATGGTGGAGGGCATGAAAAAGAAAGGCAAGATGAACAATTGCTTGGCTGTATGTGACGACGGCAGAATACGCATACGGGGAAAGGCGAGGGAGGTCTCACTGGCTTTGGGACTTTTGGTGTCTGAATTGACCCAAGAGCCATGGAACGGAAAGGCGGTCAGTTGGCACTCAACTCTACAACCGATACAAGGCCATGATCTTAAGTCCAAGTCCAAATTTGTGAGGAAGATGGACTTCGAGGGCTCAGATAAATACGATCTTGATATTGAGGAAGTGCTTGACTCGATTTTGGAACTGGCAGTGAATGAGAATTTGCAGCCAGAGCAGATGGTCAAGAAGGTGTTTGTGTTCAGCAAGCAACACTTTAGCCATGAGGCTTATTCCTTATGGGACGATGATTATAATGAAATAAAGAGGAAGTTTGAGGCAAAAGGGTACGGCGATGCGGTGCCACACATAGTGATTTGGTTTATGCCAGATCTTTACTTAGAATGGGAGAAGATAGAGATGCCGTGGACACAACCGGGGATGACAATGTTGAGTGGCTTCTCCGAAAATTTGCTCAAGTTGTTCTTAGAGAATGATGGGGAAATTGGCCCAGAGCATGTCATGGAAGCCGCCATCTCCGAAGAGAAGTATCAAAAGCTGGCTGTAGTGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

596

Amino Acids

67.86

Weight (kDa)

5.44

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 65 - 175 1.8e-21 Domain of unknown function (DUF2828)
DUF2828 PF11443 176 - 317 1.6e-18 Domain of unknown function (DUF2828)
DUF2828 PF11443 331 - 386 1.2e-07 Domain of unknown function (DUF2828)
DUF7788 PF25043 388 - 584 4.4e-41 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1527
Acc16I TGCGCA 1 cut(s) 437
AccB1I GGYRCC 2 cut(s) 934, 1573
AccI GTMKAC 2 cut(s) 53, 913
AccII CGCG 1 cut(s) 398
AccIII TCCGGA 2 cut(s) 79, 862
AciI CCGC 6 cut(s) 305, 396, 558, 1280, 1571, 1743
AclI AACGTT 1 cut(s) 1092
AclWI GGATC 3 cut(s) 62, 473, 1089
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 4 cut(s) 707, 1340, 1435, 1681
AcyI GRCGYC 1 cut(s) 964
AdeI CACNNNGTG 1 cut(s) 1585
AfaI GTAC 4 cut(s) 202, 497, 743, 1562
AfiI CCNNNNNNNGG 6 cut(s) 176, 402, 1094, 1095, 1271, 1313
AflII CTTAAG 1 cut(s) 1325
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 7 cut(s) 124, 232, 292, 679, 700, 908, 1115
AjnI CCWGG 1 cut(s) 311
AjuI GAANNNNNNNTTGG 8 cut(s) 110, 137, 142, 169, 914, 946, 1151, 1183
AluBI AGCT 5 cut(s) 44, 85, 773, 1111, 1771
AluI AGCT 5 cut(s) 44, 85, 773, 1111, 1771
Alw21I GWGCWC 2 cut(s) 87, 568
Alw26I GTCTC 3 cut(s) 536, 992, 1225
AlwI GGATC 3 cut(s) 62, 473, 1089
AlwNI CAGNNNCTG 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 849
Aor13HI TCCGGA 2 cut(s) 79, 862
AoxI GGCC 9 cut(s) 178, 309, 393, 511, 750, 948, 1071, 1315, 1720
ApeKI GCWGC 4 cut(s) 301, 438, 770, 1441
ApoI RAATTY 4 cut(s) 707, 1340, 1435, 1681
AsiGI ACCGGT 1 cut(s) 203
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 1721
AsuC2I CCSGG 3 cut(s) 515, 1044, 1650
AsuHPI GGTGA 2 cut(s) 374, 1027
AvaI CYCGRG 1 cut(s) 849
BaeGI GKGCMC 1 cut(s) 939
BanI GGYRCC 2 cut(s) 934, 1573
BanII GRGCYC 2 cut(s) 87, 1370
Bbv12I GWGCWC 2 cut(s) 87, 568
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 288, 450, 782, 1453
BccI CCATC 5 cut(s) 809, 1348, 1447, 1703, 1754
BceAI ACGGC 4 cut(s) 408, 1201, 1579, 1621
BciT130I CCWGG 1 cut(s) 313
BclI TGATCA 1 cut(s) 237
BcnI CCSGG 3 cut(s) 515, 1044, 1650
BcoDI GTCTC 3 cut(s) 536, 992, 1225
BfaI CTAG 2 cut(s) 506, 581
BfmI CTRYAG 1 cut(s) 1776
BfrI CTTAAG 1 cut(s) 1325
BglII AGATCT 1 cut(s) 1603
BisI GCNGC 7 cut(s) 302, 305, 396, 439, 771, 1442, 1743
BlpI GCTNAGC 1 cut(s) 1107
BlsI GCNGC 7 cut(s) 303, 306, 397, 440, 772, 1443, 1744
Bme1390I CCNGG 4 cut(s) 313, 515, 1044, 1650
BmeT110I CYCGRG 1 cut(s) 849
BmgT120I GGNCC 1 cut(s) 1721
BmiI GGNNCC 3 cut(s) 407, 936, 1575
BmrFI CCNGG 4 cut(s) 313, 515, 1044, 1650
BmsI GCATC 4 cut(s) 450, 538, 1558, 1623
BpmI CTGGAG 2 cut(s) 94, 1028
Bpu10I CCTNAGC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 1107
BpuEI CTTGAG 1 cut(s) 1673
BpuMI CCSGG 3 cut(s) 515, 1044, 1650
BsaBI GATNNNNATC 1 cut(s) 735
BsaHI GRCGYC 1 cut(s) 964
BsaI GGTCTC 1 cut(s) 1225
BsaJI CCNNGG 7 cut(s) 747, 786, 939, 1042, 1265, 1637, 1649
BsaWI WCCGGW 4 cut(s) 79, 203, 325, 862
Bsc4I CCNNNNNNNGG 6 cut(s) 176, 402, 1094, 1095, 1271, 1313
Bse118I RCCGGY 3 cut(s) 188, 203, 950
Bse1I ACTGG 2 cut(s) 1230, 1425
Bse3DI GCAATG 1 cut(s) 828
Bse8I GATNNNNATC 1 cut(s) 735
BseAI TCCGGA 2 cut(s) 79, 862
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 7 cut(s) 747, 786, 939, 1042, 1265, 1637, 1649
BseGI GGATG 3 cut(s) 441, 1084, 1659
BseJI GATNNNNATC 1 cut(s) 735
BseLI CCNNNNNNNGG 6 cut(s) 176, 402, 1094, 1095, 1271, 1313
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 5 cut(s) 255, 597, 931, 1098, 1383
BseNI ACTGG 2 cut(s) 1230, 1425
BseRI GAGGAG 3 cut(s) 535, 538, 1025
BseSI GKGCMC 1 cut(s) 939
BseX3I CGGCCG 1 cut(s) 393
BseXI GCAGC 4 cut(s) 288, 450, 782, 1453
Bsh1236I CGCG 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 396
BshFI GGCC 9 cut(s) 180, 311, 395, 513, 752, 950, 1073, 1317, 1722
BshNI GGYRCC 2 cut(s) 934, 1573
BshTI ACCGGT 1 cut(s) 203
BsiEI CGRYCG 1 cut(s) 396
BsiHKAI GWGCWC 2 cut(s) 87, 568
BsiHKCI CYCGRG 1 cut(s) 849
BslFI GGGAC 2 cut(s) 1248, 1529
BslI CCNNNNNNNGG 6 cut(s) 176, 402, 1094, 1095, 1271, 1313
BsmAI GTCTC 3 cut(s) 536, 992, 1225
BsmBI CGTCTC 1 cut(s) 992
BsmFI GGGAC 2 cut(s) 1248, 1529
BsnI GGCC 9 cut(s) 180, 311, 395, 513, 752, 950, 1073, 1317, 1722
Bso31I GGTCTC 1 cut(s) 1225
BsoBI CYCGRG 1 cut(s) 849
Bsp1286I GDGCHC 4 cut(s) 87, 568, 939, 1370
Bsp13I TCCGGA 2 cut(s) 79, 862
Bsp143I GATC 9 cut(s) 67, 220, 237, 478, 736, 1081, 1321, 1381, 1603
Bsp1720I GCTNAGC 1 cut(s) 1107
Bsp19I CCATGG 2 cut(s) 786, 1265
BspACI CCGC 6 cut(s) 305, 396, 558, 1280, 1571, 1743
BspANI GGCC 9 cut(s) 180, 311, 395, 513, 752, 950, 1073, 1317, 1722
BspCNI CTCAG 5 cut(s) 256, 598, 930, 1099, 1382
BspEI TCCGGA 2 cut(s) 79, 862
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 3 cut(s) 407, 936, 1575
BspPI GGATC 3 cut(s) 62, 473, 1089
BspT107I GGYRCC 2 cut(s) 934, 1573
BspTI CTTAAG 1 cut(s) 1325
BspTNI GGTCTC 1 cut(s) 1225
BsrDI GCAATG 1 cut(s) 828
BsrFI RCCGGY 3 cut(s) 188, 203, 950
BsrI ACTGG 2 cut(s) 1230, 1425
BssAI RCCGGY 3 cut(s) 188, 203, 950
BssECI CCNNGG 7 cut(s) 747, 786, 939, 1042, 1265, 1637, 1649
BssMI GATC 9 cut(s) 67, 220, 237, 478, 736, 1081, 1321, 1381, 1603
BssNAI GTATAC 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 964
BssT1I CCWWGG 4 cut(s) 747, 786, 939, 1265
Bst1107I GTATAC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 675
Bst6I CTCTTC 2 cut(s) 534, 1749
BstACI GRCGYC 1 cut(s) 964
BstAFI CTTAAG 1 cut(s) 1325
BstC8I GCNNGC 6 cut(s) 190, 309, 775, 952, 1481, 1773
BstDEI CTNAG 8 cut(s) 48, 264, 606, 917, 1107, 1369, 1612, 1699
BstDSI CCRYGG 3 cut(s) 786, 1265, 1637
BstEII GGTNACC 2 cut(s) 206, 328
BstF5I GGATG 3 cut(s) 441, 1084, 1659
BstFNI CGCG 1 cut(s) 398
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 9 cut(s) 70, 223, 240, 481, 739, 1084, 1324, 1384, 1606
BstMAI GTCTC 3 cut(s) 536, 992, 1225
BstMBI GATC 9 cut(s) 67, 220, 237, 478, 736, 1081, 1321, 1381, 1603
BstMCI CGRYCG 1 cut(s) 396
BstMWI GCNNNNNNNGC 3 cut(s) 260, 1194, 1447
BstNI CCWGG 1 cut(s) 313
BstNSI RCATGY 1 cut(s) 1733
BstPI GGTNACC 2 cut(s) 206, 328
BstSCI CCNGG 4 cut(s) 311, 513, 1042, 1648
BstSFI CTRYAG 1 cut(s) 1776
BstSLI GKGCMC 1 cut(s) 939
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 4 cut(s) 288, 450, 782, 1453
BstX2I RGATCY 1 cut(s) 1603
BstYI RGATCY 1 cut(s) 1603
BstZ17I GTATAC 1 cut(s) 54
BstZI CGGCCG 1 cut(s) 393
BsuRI GGCC 9 cut(s) 180, 311, 395, 513, 752, 950, 1073, 1317, 1722
BtgI CCRYGG 3 cut(s) 786, 1265, 1637
BtgZI GCGATG 1 cut(s) 1581
BtsCI GGATG 3 cut(s) 441, 1084, 1659
BtsI GCAGTG 1 cut(s) 1431
BtsIMutI CAGTG 2 cut(s) 1223, 1431
Cac8I GCNNGC 6 cut(s) 190, 309, 775, 952, 1481, 1773
CaiI CAGNNNCTG 1 cut(s) 551
CfoI GCGC 1 cut(s) 438
Cfr10I RCCGGY 3 cut(s) 188, 203, 950
Cfr13I GGNCC 1 cut(s) 1721
CseI GACGC 2 cut(s) 776, 972
Csp6I GTAC 4 cut(s) 201, 496, 742, 1561
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 9 cut(s) 5, 787, 1069, 1138, 1266, 1319, 1496, 1730, 1735
CviQI GTAC 4 cut(s) 201, 496, 742, 1561
DdeI CTNAG 8 cut(s) 48, 264, 606, 917, 1107, 1369, 1612, 1699
DpnI GATC 9 cut(s) 69, 222, 239, 480, 738, 1083, 1323, 1383, 1605
DpnII GATC 9 cut(s) 67, 220, 237, 478, 736, 1081, 1321, 1381, 1603
DraIII CACNNNGTG 1 cut(s) 1585
EaeI YGGCCR 1 cut(s) 393
EagI CGGCCG 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 534, 1749
EarI CTCTTC 2 cut(s) 534, 1749
Ecl136II GAGCTC 1 cut(s) 85
EclXI CGGCCG 1 cut(s) 393
Eco130I CCWWGG 4 cut(s) 747, 786, 939, 1265
Eco24I GRGCYC 2 cut(s) 87, 1370
Eco31I GGTCTC 1 cut(s) 1225
Eco52I CGGCCG 1 cut(s) 393
Eco53kI GAGCTC 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 849
Eco91I GGTNACC 2 cut(s) 206, 328
EcoICRI GAGCTC 1 cut(s) 85
EcoO65I GGTNACC 2 cut(s) 206, 328
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 4 cut(s) 747, 786, 939, 1265
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 87, 1370
ErhI CCWWGG 4 cut(s) 747, 786, 939, 1265
Esp3I CGTCTC 1 cut(s) 992
FaeI CATG 9 cut(s) 8, 790, 1072, 1141, 1269, 1322, 1499, 1733, 1738
FalI AAGNNNNNCTT 6 cut(s) 1343, 1375, 1472, 1504, 1682, 1714
FaqI GGGAC 2 cut(s) 1248, 1529
FatI CATG 9 cut(s) 4, 786, 1068, 1137, 1265, 1318, 1495, 1729, 1734
FbaI TGATCA 1 cut(s) 237
FblI GTMKAC 2 cut(s) 53, 913
Fnu4HI GCNGC 7 cut(s) 302, 305, 396, 439, 771, 1442, 1743
FokI GGATG 3 cut(s) 428, 1071, 1666
FriOI GRGCYC 2 cut(s) 87, 1370
Fsp4HI GCNGC 7 cut(s) 302, 305, 396, 439, 771, 1442, 1743
FspBI CTAG 2 cut(s) 506, 581
FspI TGCGCA 1 cut(s) 437
GlaI GCGC 1 cut(s) 437
GluI GCNGC 7 cut(s) 302, 305, 396, 439, 771, 1442, 1743
GsuI CTGGAG 2 cut(s) 94, 1028
HaeIII GGCC 9 cut(s) 180, 311, 395, 513, 752, 950, 1073, 1317, 1722
HgaI GACGC 2 cut(s) 776, 972
HhaI GCGC 1 cut(s) 438
Hin1I GRCGYC 1 cut(s) 964
Hin1II CATG 9 cut(s) 8, 790, 1072, 1141, 1269, 1322, 1499, 1733, 1738
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 1 cut(s) 914
HindII GTYRAC 1 cut(s) 914
HinfI GANTC 3 cut(s) 854, 915, 1406
HphI GGTGA 2 cut(s) 374, 1027
Hpy166II GTNNAC 6 cut(s) 54, 603, 914, 962, 1641, 1783
Hpy188I TCNGA 5 cut(s) 721, 1249, 1372, 1678, 1753
Hpy188III TCNNGA 8 cut(s) 80, 111, 506, 863, 919, 1007, 1385, 1459
Hpy8I GTNNAC 6 cut(s) 54, 603, 914, 962, 1641, 1783
Hpy99I CGWCG 1 cut(s) 1187
HpyAV CCTTC 7 cut(s) 456, 503, 512, 902, 916, 940, 1456
HpyCH4III ACNGT 1 cut(s) 675
HpyCH4IV ACGT 3 cut(s) 234, 1001, 1092
HpyCH4V TGCA 3 cut(s) 4, 783, 1441
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 1194, 1447
HpyF3I CTNAG 8 cut(s) 48, 264, 606, 917, 1107, 1369, 1612, 1699
HpySE526I ACGT 3 cut(s) 234, 1001, 1092
Hsp92I GRCGYC 1 cut(s) 964
Hsp92II CATG 9 cut(s) 8, 790, 1072, 1141, 1269, 1322, 1499, 1733, 1738
HspAI GCGC 1 cut(s) 436
Kpn2I TCCGGA 2 cut(s) 79, 862
KroI GCCGGC 2 cut(s) 188, 950
KroNI GCCGGC 2 cut(s) 190, 952
Ksp22I TGATCA 1 cut(s) 237
Kzo9I GATC 9 cut(s) 67, 220, 237, 478, 736, 1081, 1321, 1381, 1603
LmnI GCTCC 3 cut(s) 49, 82, 411
Lsp1109I GCAGC 4 cut(s) 288, 450, 782, 1453
LweI GCATC 4 cut(s) 450, 538, 1558, 1623
MaeI CTAG 2 cut(s) 506, 581
MaeII ACGT 3 cut(s) 234, 1001, 1092
MaeIII GTNAC 6 cut(s) 206, 328, 620, 639, 652, 1178
MalI GATC 9 cut(s) 69, 222, 239, 480, 738, 1083, 1323, 1383, 1605
MboI GATC 9 cut(s) 67, 220, 237, 478, 736, 1081, 1321, 1381, 1603
MboII GAAGA 6 cut(s) 548, 551, 607, 1363, 1636, 1766
MfeI CAATTG 1 cut(s) 1162
MflI RGATCY 1 cut(s) 1603
MhlI GDGCHC 4 cut(s) 87, 568, 939, 1370
MlyI GAGTC 2 cut(s) 909, 1400
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 2 cut(s) 79, 862
MroNI GCCGGC 2 cut(s) 188, 950
MseI TTAA 2 cut(s) 711, 1326
MspA1I CMGCKG 2 cut(s) 307, 773
MspCI CTTAAG 1 cut(s) 1325
MspR9I CCNGG 4 cut(s) 313, 515, 1044, 1650
MunI CAATTG 1 cut(s) 1162
MvaI CCWGG 1 cut(s) 313
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 3 cut(s) 260, 1194, 1447
NaeI GCCGGC 2 cut(s) 190, 952
NciI CCSGG 3 cut(s) 515, 1044, 1650
NcoI CCATGG 2 cut(s) 786, 1265
NdeII GATC 9 cut(s) 67, 220, 237, 478, 736, 1081, 1321, 1381, 1603
NgoMIV GCCGGC 2 cut(s) 188, 950
NlaIII CATG 9 cut(s) 8, 790, 1072, 1141, 1269, 1322, 1499, 1733, 1738
NlaIV GGNNCC 3 cut(s) 407, 936, 1575
NmuCI GTSAC 2 cut(s) 620, 1178
NsbI TGCGCA 1 cut(s) 437
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 1733
PdiI GCCGGC 2 cut(s) 190, 952
PfeI GAWTC 1 cut(s) 854
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 7 cut(s) 303, 306, 397, 440, 772, 1443, 1744
PleI GAGTC 2 cut(s) 909, 1400
PpsI GAGTC 2 cut(s) 909, 1400
PsiI TTATAA 1 cut(s) 1527
Psp124BI GAGCTC 1 cut(s) 87
Psp1406I AACGTT 1 cut(s) 1092
Psp6I CCWGG 1 cut(s) 311
PspEI GGTNACC 2 cut(s) 206, 328
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 3 cut(s) 407, 936, 1575
PspPI GGNCC 1 cut(s) 1721
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 1 cut(s) 1603
PvuII CAGCTG 1 cut(s) 773
RsaI GTAC 4 cut(s) 202, 497, 743, 1562
RsaNI GTAC 4 cut(s) 201, 496, 742, 1561
SacI GAGCTC 1 cut(s) 87
SalI GTCGAC 1 cut(s) 912
SaqAI TTAA 2 cut(s) 711, 1326
SatI GCNGC 7 cut(s) 302, 305, 396, 439, 771, 1442, 1743
Sau3AI GATC 9 cut(s) 67, 220, 237, 478, 736, 1081, 1321, 1381, 1603
Sau96I GGNCC 1 cut(s) 1721
SchI GAGTC 2 cut(s) 909, 1400
ScrFI CCNGG 4 cut(s) 313, 515, 1044, 1650
SduI GDGCHC 4 cut(s) 87, 568, 939, 1370
SfaNI GCATC 4 cut(s) 450, 538, 1558, 1623
SfcI CTRYAG 1 cut(s) 1776
SmlI CTYRAG 2 cut(s) 1325, 1688
SmoI CTYRAG 2 cut(s) 1325, 1688
SsiI CCGC 6 cut(s) 305, 396, 558, 1280, 1571, 1743
SspI AATATT 1 cut(s) 696
SspMI CTAG 2 cut(s) 506, 581
SstI GAGCTC 1 cut(s) 87
StyD4I CCNGG 4 cut(s) 311, 513, 1042, 1648
StyI CCWWGG 4 cut(s) 747, 786, 939, 1265
TaaI ACNGT 1 cut(s) 675
TaiI ACGT 3 cut(s) 237, 1004, 1095
TaqI TCGA 6 cut(s) 66, 129, 486, 913, 1362, 1409
TatI WGTACW 1 cut(s) 495
TauI GCSGC 3 cut(s) 307, 398, 1745
TfiI GAWTC 1 cut(s) 854
Tru1I TTAA 2 cut(s) 711, 1326
Tru9I TTAA 2 cut(s) 711, 1326
TscAI CASTG 2 cut(s) 1230, 1431
TseFI GTSAC 2 cut(s) 620, 1178
TseI GCWGC 4 cut(s) 301, 438, 770, 1441
Tsp45I GTSAC 2 cut(s) 620, 1178
TspDTI ATGAA 5 cut(s) 145, 549, 1154, 1172, 1545
TspGWI ACGGA 1 cut(s) 1287
TspRI CASTG 2 cut(s) 1230, 1431
Vha464I CTTAAG 1 cut(s) 1325
XapI RAATTY 4 cut(s) 707, 1340, 1435, 1681
XbaI TCTAGA 1 cut(s) 505
XceI RCATGY 1 cut(s) 1733
XmiI GTMKAC 2 cut(s) 53, 913
XspI CTAG 2 cut(s) 506, 581
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.