Rh2CG365900

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000255
Physical Location & Seq
Reverse (-)
49638888 .. 49640638
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG365900.1

Sequence Viewer

Length: 1689 bp
ATGGGCTTCACCGAGAACGACTCCGCCACATTCCTCTCCTCCGGCAACCCTTGCCTCGATCTCTTCTTCCACGTCGTACCGAACACTCCGGCATCCTATCTCCACCAGCAGCTCCCTCTCGCCTGGGCCCACGACGCCCTAACCACCCTCAAGCTCATCTGCAACCTCCGCGGCGTACGCGGCACCGGAAAGTCCGACAAAGAAGGGTTCTACACGGCTGCTCTCTGGCTCCACCAGCACCACCCCAAAACCCTAGCATGCAACGTCGCTTCCCTCGCCGAGTTCGGCTACTTCAAGGACCTCCCGGAGATTCTCTACCGCCTTCTAGAAGGCCACGACGTCCGACAGACCCAAAAGGAAGAGTGGCAACTGAGAAAACACTCCATCGGGAGAAGGGCCTCCCCGAGAGGCAAGGCGGCGAAGTCGGCTAAAACCAAGAGTCTCGGAGTAACCAGGCAGGAGCCGAAGGAGGCCAGAAAAGCCAAGGCGGCTGAGAGGGTAAAATCGGAAAGGGCAAATATCAGCGCATTGAGGCATCAGAAGACTTTGGAGATGGCCAATAAGGCCGTTGAGAGGTACCAGCGAGACCCGGATTACCGATTTTTATATGACCGGGTTTCGGATCTTTTCAGTGAGTGTTTGAAGTCCGATGTCGAGAATCTCAAGGCCAATCAGTACAAGAAGATCAGCTTGGCAGCCAAGTGGTGCCCTTCTATCGATTCGTCGTTTGATAAGGCAACATTGCTATGTGAAAGCATAGCAAGGAACGGTCCGAGACCGGCTGAGGAAGGAGATTCTTGTGCCGCTGAGGTTTATATTGGAGCTAATGACTGGAATTCGATTCCTTATAACCGGGTCGCCTCGTTGGCCATGAAGCTTTACAAGGAGAAGTTCTTCAAGCATGATGAAGAGAGGTTCAAAAAGTACTTGGAGAATGTGCAGGCCGGCAAGTCCAAGATTGCTGCCGGTGCTCTGCTGCCGCACGAGATCATAGCCTCTCTGAGGGACAGTGATGGGGGCCAAGTGGCCGAGCTTCAGTGGCAGAGAATGGTAGAGGATATGTTGAAGTTGGGGAAGATGAAGAATTGCTTGGCTGTGTGTGACGTGTCCGGAAGCATGAATGGACAGCCAATGGAGGTGTGTGTGGCTTTGGGGCTTTTGGTGTCTGAGCTGTGTGATGAGCCATGGAAAGGGAAGGTGATCACCTTCAGTCACAACCCTCAACTACATTTAATCCGGGGTGAAAGTCTCGAGTCCAAGACCAATTTTATAAGGGGGATGGATTGGGGGTGGAACACTGATTTTCAGAAGGTGTTTGATTTGCTTCTCCTGGTGGCGGTTAATGGAAAGTTGAAGCCGGAAAATATGATCAAGAGGATTTTTGTGTTCAGTGACATGGAGTTTGATCAGGCCTCGTCAAATAGATGGGAGACTGATTATCAGGTGATTCAAAGAAAGTATAGGGAGAAGGGGTATGGGGATGCTGTGCCACAGATAGTGTTTTGGAATCTGAGGGACTCGAGGTCTACTCCTGTGCCAGGGACTCAACCTGGGGTGGCTTTGTTGAGTGGCTTCTCCAAGAACTTGCTCAAGTTGTTCCTGGATTACGATGGGGAAATCCGCCCGGACCTGACCATGGAATTGGCTATCTCTGGCCCTGAGTATCAGAAGCTGGTTGTCCTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

562

Amino Acids

63.61

Weight (kDa)

8.65

Isoelectric Point (pI)

31.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 4 - 255 2.3e-82 Domain of unknown function (DUF2828)
DUF2828 PF11443 269 - 360 3e-33 Domain of unknown function (DUF2828)
DUF7788 PF25043 362 - 540 1.6e-79 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 849, 1271
AatII GACGTC 1 cut(s) 342
Acc65I GGTACC 1 cut(s) 576
AccB1I GGYRCC 3 cut(s) 182, 576, 705
AccI GTMKAC 1 cut(s) 1526
AccII CGCG 2 cut(s) 171, 180
AccIII TCCGGA 1 cut(s) 1109
AclWI GGATC 1 cut(s) 630
AcoI YGGCCR 3 cut(s) 555, 867, 1026
AcsI RAATTY 1 cut(s) 835
AcuI CTGAAG 2 cut(s) 1019, 1192
AcyI GRCGYC 2 cut(s) 135, 339
AfaI GTAC 5 cut(s) 78, 177, 578, 677, 926
AfiI CCNNNNNNNGG 7 cut(s) 573, 619, 1002, 1190, 1336, 1538, 1636
AflIII ACRYGT 1 cut(s) 1104
AgsI TTSAA 7 cut(s) 295, 643, 898, 919, 1066, 1354, 1451
AhdI GACNNNNNGTC 1 cut(s) 1522
AjiI CACGTC 2 cut(s) 73, 1105
AjnI CCWGG 7 cut(s) 122, 452, 1329, 1537, 1549, 1599, 1680
AjuI GAANNNNNNNTTGG 4 cut(s) 674, 706, 1073, 1105
AluBI AGCT 8 cut(s) 112, 154, 690, 824, 877, 1033, 1171, 1672
AluI AGCT 8 cut(s) 112, 154, 690, 824, 877, 1033, 1171, 1672
Alw21I GWGCWC 1 cut(s) 973
Alw26I GTCTC 5 cut(s) 446, 579, 769, 1253, 1424
AlwI GGATC 1 cut(s) 630
AlwNI CAGNNNCTG 1 cut(s) 1672
Ama87I CYCGRG 3 cut(s) 403, 1250, 1519
Aor13HI TCCGGA 1 cut(s) 1109
ApaI GGGCCC 1 cut(s) 130
ApeKI GCWGC 5 cut(s) 109, 218, 695, 962, 976
ApoI RAATTY 1 cut(s) 835
ArsI GACNNNNNNTTYG 2 cut(s) 1385, 1417
Asp700I GAANNNNTTC 1 cut(s) 893
Asp718I GGTACC 1 cut(s) 576
AspLEI GCGC 1 cut(s) 527
AspS9I GGNCC 8 cut(s) 126, 127, 298, 396, 770, 1018, 1627, 1655
AsuC2I CCSGG 6 cut(s) 305, 590, 614, 854, 1238, 1625
AsuHPI GGTGA 4 cut(s) 1195, 1210, 1253, 1456
AvaI CYCGRG 3 cut(s) 403, 1250, 1519
AvaII GGWCC 3 cut(s) 298, 770, 1627
BaeGI GKGCMC 2 cut(s) 130, 710
BalI TGGCCA 2 cut(s) 557, 869
BanI GGYRCC 3 cut(s) 182, 576, 705
BanII GRGCYC 1 cut(s) 130
BauI CACGAG 1 cut(s) 983
BbsI GAAGAC 1 cut(s) 548
Bbv12I GWGCWC 1 cut(s) 973
BbvCI CCTCAGC 2 cut(s) 783, 807
BbvI GCAGC 5 cut(s) 121, 205, 707, 949, 963
BccI CCATC 6 cut(s) 392, 547, 1007, 1273, 1419, 1604
BceAI ACGGC 2 cut(s) 231, 551
BciT130I CCWGG 7 cut(s) 124, 454, 1331, 1539, 1551, 1601, 1682
BclI TGATCA 3 cut(s) 1200, 1368, 1405
BcnI CCSGG 6 cut(s) 305, 590, 614, 854, 1238, 1625
BcoDI GTCTC 5 cut(s) 446, 579, 769, 1253, 1424
BfaI CTAG 2 cut(s) 254, 326
BglI GCCNNNNNGGC 3 cut(s) 488, 563, 866
BmcAI AGTACT 1 cut(s) 926
Bme18I GGWCC 3 cut(s) 298, 770, 1627
BmeRI GACNNNNNGTC 1 cut(s) 1522
BmeT110I CYCGRG 3 cut(s) 403, 1250, 1519
BmgBI CACGTC 2 cut(s) 73, 1105
BmgT120I GGNCC 8 cut(s) 126, 127, 298, 396, 770, 1018, 1627, 1655
BmiI GGNNCC 7 cut(s) 128, 184, 230, 462, 578, 707, 1019
BmsI GCATC 3 cut(s) 101, 544, 1471
BpiI GAAGAC 1 cut(s) 548
BplI GAGNNNNNCTC 3 cut(s) 37, 1513, 1545
Bpu10I CCTNAGC 2 cut(s) 783, 807
BpuEI CTTGAG 3 cut(s) 134, 647, 1574
BpuMI CCSGG 6 cut(s) 305, 590, 614, 854, 1238, 1625
Bsa29I ATCGAT 1 cut(s) 717
BsaHI GRCGYC 2 cut(s) 135, 339
BsaI GGTCTC 2 cut(s) 579, 769
BsaJI CCNNGG 8 cut(s) 123, 169, 483, 1184, 1237, 1538, 1550, 1635
BsaWI WCCGGW 2 cut(s) 185, 1109
BsaXI ACNNNNNCTCC 2 cut(s) 1457, 1487
Bsc4I CCNNNNNNNGG 7 cut(s) 573, 619, 1002, 1190, 1336, 1538, 1636
Bse118I RCCGGY 3 cut(s) 778, 944, 965
Bse1I ACTGG 1 cut(s) 836
Bse3DI GCAATG 1 cut(s) 740
BseAI TCCGGA 1 cut(s) 1109
BseBI CCWGG 7 cut(s) 124, 454, 1331, 1539, 1551, 1601, 1682
BseCI ATCGAT 1 cut(s) 717
BseDI CCNNGG 8 cut(s) 123, 169, 483, 1184, 1237, 1538, 1550, 1635
BseGI GGATG 3 cut(s) 92, 1284, 1486
BseLI CCNNNNNNNGG 7 cut(s) 573, 619, 1002, 1190, 1336, 1538, 1636
BseMI GCAATG 1 cut(s) 740
BseMII CTCAG 8 cut(s) 362, 483, 774, 798, 992, 1158, 1502, 1650
BseNI ACTGG 1 cut(s) 836
BseRI GAGGAG 1 cut(s) 28
BseSI GKGCMC 2 cut(s) 130, 710
BseXI GCAGC 5 cut(s) 121, 205, 707, 949, 963
BsgI GTGCAG 1 cut(s) 959
Bsh1236I CGCG 2 cut(s) 171, 180
BshNI GGYRCC 3 cut(s) 182, 576, 705
BshVI ATCGAT 1 cut(s) 717
BsiHKAI GWGCWC 1 cut(s) 973
BsiHKCI CYCGRG 3 cut(s) 403, 1250, 1519
BsiWI CGTACG 1 cut(s) 175
BslFI GGGAC 3 cut(s) 1019, 1529, 1555
BslI CCNNNNNNNGG 7 cut(s) 573, 619, 1002, 1190, 1336, 1538, 1636
BsmAI GTCTC 5 cut(s) 446, 579, 769, 1253, 1424
BsmFI GGGAC 3 cut(s) 1019, 1529, 1555
Bso31I GGTCTC 2 cut(s) 579, 769
BsoBI CYCGRG 3 cut(s) 403, 1250, 1519
Bsp120I GGGCCC 1 cut(s) 126
Bsp1286I GDGCHC 3 cut(s) 130, 710, 973
Bsp13I TCCGGA 1 cut(s) 1109
Bsp143I GATC 7 cut(s) 58, 622, 684, 987, 1200, 1368, 1405
Bsp19I CCATGG 2 cut(s) 1184, 1635
BspCNI CTCAG 8 cut(s) 363, 484, 775, 799, 993, 1159, 1503, 1651
BspDI ATCGAT 1 cut(s) 717
BspEI TCCGGA 1 cut(s) 1109
BspFNI CGCG 2 cut(s) 171, 180
BspLI GGNNCC 7 cut(s) 128, 184, 230, 462, 578, 707, 1019
BspPI GGATC 1 cut(s) 630
BspT107I GGYRCC 3 cut(s) 182, 576, 705
BspTNI GGTCTC 2 cut(s) 579, 769
BsrDI GCAATG 1 cut(s) 740
BsrFI RCCGGY 3 cut(s) 778, 944, 965
BsrI ACTGG 1 cut(s) 836
BssAI RCCGGY 3 cut(s) 778, 944, 965
BssECI CCNNGG 8 cut(s) 123, 169, 483, 1184, 1237, 1538, 1550, 1635
BssMI GATC 7 cut(s) 58, 622, 684, 987, 1200, 1368, 1405
BssNI GRCGYC 2 cut(s) 135, 339
BssSI CACGAG 1 cut(s) 983
BssT1I CCWWGG 3 cut(s) 483, 1184, 1635
Bst2BI CACGAG 1 cut(s) 983
Bst2UI CCWGG 7 cut(s) 124, 454, 1331, 1539, 1551, 1601, 1682
Bst4CI ACNGT 2 cut(s) 770, 1010
Bst6I CTCTTC 3 cut(s) 68, 354, 903
BstACI GRCGYC 2 cut(s) 135, 339
BstAPI GCANNNNNTGC 1 cut(s) 51
BstC8I GCNNGC 3 cut(s) 259, 942, 946
BstDEI CTNAG 8 cut(s) 371, 492, 783, 807, 1001, 1167, 1511, 1659
BstDSI CCRYGG 3 cut(s) 169, 1184, 1635
BstENI CCTNNNNNAGG 2 cut(s) 1000, 1536
BstF5I GGATG 3 cut(s) 92, 1284, 1486
BstFNI CGCG 2 cut(s) 171, 180
BstHHI GCGC 1 cut(s) 527
BstKTI GATC 7 cut(s) 61, 625, 687, 990, 1203, 1371, 1408
BstMAI GTCTC 5 cut(s) 446, 579, 769, 1253, 1424
BstMBI GATC 7 cut(s) 58, 622, 684, 987, 1200, 1368, 1405
BstNI CCWGG 7 cut(s) 124, 454, 1331, 1539, 1551, 1601, 1682
BstNSI RCATGY 1 cut(s) 261
BstSLI GKGCMC 2 cut(s) 130, 710
BstUI CGCG 2 cut(s) 171, 180
BstV1I GCAGC 5 cut(s) 121, 205, 707, 949, 963
BstV2I GAAGAC 1 cut(s) 548
BstX2I RGATCY 1 cut(s) 622
BstXI CCANNNNNNTGG 1 cut(s) 1642
BstYI RGATCY 1 cut(s) 622
Bsu15I ATCGAT 1 cut(s) 717
BsuTUI ATCGAT 1 cut(s) 717
BtgI CCRYGG 3 cut(s) 169, 1184, 1635
BtrI CACGTC 2 cut(s) 73, 1105
BtsCI GGATG 3 cut(s) 92, 1284, 1486
BtsIMutI CAGTG 5 cut(s) 637, 1015, 1043, 1296, 1396
Cac8I GCNNGC 3 cut(s) 259, 942, 946
CaiI CAGNNNCTG 1 cut(s) 1672
CfoI GCGC 1 cut(s) 527
Cfr10I RCCGGY 3 cut(s) 778, 944, 965
Cfr13I GGNCC 8 cut(s) 126, 127, 298, 396, 770, 1018, 1627, 1655
Cfr42I CCGCGG 1 cut(s) 172
ClaI ATCGAT 1 cut(s) 717
CpoI CGGWCCG 1 cut(s) 770
CseI GACGC 1 cut(s) 143
Csp6I GTAC 5 cut(s) 77, 176, 577, 676, 925
CspI CGGWCCG 1 cut(s) 770
CviAII CATG 7 cut(s) 258, 871, 902, 1117, 1185, 1396, 1636
CviQI GTAC 5 cut(s) 77, 176, 577, 676, 925
DdeI CTNAG 8 cut(s) 371, 492, 783, 807, 1001, 1167, 1511, 1659
DpnI GATC 7 cut(s) 60, 624, 686, 989, 1202, 1370, 1407
DpnII GATC 7 cut(s) 58, 622, 684, 987, 1200, 1368, 1405
DriI GACNNNNNGTC 1 cut(s) 1522
EaeI YGGCCR 3 cut(s) 555, 867, 1026
Eam1104I CTCTTC 3 cut(s) 68, 354, 903
Eam1105I GACNNNNNGTC 1 cut(s) 1522
EarI CTCTTC 3 cut(s) 68, 354, 903
EciI GGCGGA 2 cut(s) 13, 1610
Eco130I CCWWGG 3 cut(s) 483, 1184, 1635
Eco147I AGGCCT 1 cut(s) 1412
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 2 cut(s) 579, 769
Eco47I GGWCC 3 cut(s) 298, 770, 1627
Eco57I CTGAAG 2 cut(s) 1019, 1192
Eco88I CYCGRG 3 cut(s) 403, 1250, 1519
EcoNI CCTNNNNNAGG 2 cut(s) 1000, 1536
EcoO109I RGGNCCY 2 cut(s) 298, 396
EcoRI GAATTC 1 cut(s) 835
EcoRII CCWGG 7 cut(s) 122, 452, 1329, 1537, 1549, 1599, 1680
EcoT14I CCWWGG 3 cut(s) 483, 1184, 1635
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 3 cut(s) 483, 1184, 1635
FaeI CATG 7 cut(s) 261, 874, 905, 1120, 1188, 1399, 1639
FalI AAGNNNNNCTT 4 cut(s) 674, 706, 1073, 1105
FaqI GGGAC 3 cut(s) 1019, 1529, 1555
FatI CATG 7 cut(s) 257, 870, 901, 1116, 1184, 1395, 1635
FbaI TGATCA 3 cut(s) 1200, 1368, 1405
FblI GTMKAC 1 cut(s) 1526
FokI GGATG 3 cut(s) 79, 1291, 1493
FriOI GRGCYC 1 cut(s) 130
FspBI CTAG 2 cut(s) 254, 326
GlaI GCGC 1 cut(s) 526
HgaI GACGC 1 cut(s) 143
HhaI GCGC 1 cut(s) 527
Hin1I GRCGYC 2 cut(s) 135, 339
Hin1II CATG 7 cut(s) 261, 874, 905, 1120, 1188, 1399, 1639
Hin6I GCGC 1 cut(s) 525
HinP1I GCGC 1 cut(s) 525
HindIII AAGCTT 1 cut(s) 875
HphI GGTGA 4 cut(s) 1195, 1210, 1253, 1456
Hpy166II GTNNAC 1 cut(s) 1527
Hpy188III TCNNGA 6 cut(s) 326, 388, 655, 1110, 1250, 1372
Hpy8I GTNNAC 1 cut(s) 1527
Hpy99I CGWCG 5 cut(s) 77, 137, 269, 341, 727
HpyCH4III ACNGT 2 cut(s) 770, 1010
HpyCH4IV ACGT 4 cut(s) 72, 264, 339, 1104
HpyCH4V TGCA 3 cut(s) 162, 261, 940
HpyF3I CTNAG 8 cut(s) 371, 492, 783, 807, 1001, 1167, 1511, 1659
HpySE526I ACGT 4 cut(s) 72, 264, 339, 1104
Hsp92I GRCGYC 2 cut(s) 135, 339
Hsp92II CATG 7 cut(s) 261, 874, 905, 1120, 1188, 1399, 1639
HspAI GCGC 1 cut(s) 525
Kpn2I TCCGGA 1 cut(s) 1109
KpnI GGTACC 1 cut(s) 580
KroI GCCGGC 1 cut(s) 944
KroNI GCCGGC 1 cut(s) 946
Ksp22I TGATCA 3 cut(s) 1200, 1368, 1405
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 7 cut(s) 58, 622, 684, 987, 1200, 1368, 1405
LmnI GCTCC 4 cut(s) 117, 234, 460, 821
Lsp1109I GCAGC 5 cut(s) 121, 205, 707, 949, 963
LweI GCATC 3 cut(s) 101, 544, 1471
MaeI CTAG 2 cut(s) 254, 326
MaeII ACGT 4 cut(s) 72, 264, 339, 1104
MaeIII GTNAC 4 cut(s) 448, 1100, 1211, 1391
MalI GATC 7 cut(s) 60, 624, 686, 989, 1202, 1370, 1407
MboI GATC 7 cut(s) 58, 622, 684, 987, 1200, 1368, 1405
MboII GAAGA 9 cut(s) 55, 58, 371, 553, 694, 886, 920, 1087, 1093
MflI RGATCY 1 cut(s) 622
MhlI GDGCHC 3 cut(s) 130, 710, 973
MlsI TGGCCA 2 cut(s) 557, 869
MluCI AATT 4 cut(s) 835, 1084, 1264, 1640
MluNI TGGCCA 2 cut(s) 557, 869
MlyI GAGTC 5 cut(s) 14, 448, 1262, 1511, 1537
MmeI TCCRAC 2 cut(s) 219, 367
Mox20I TGGCCA 2 cut(s) 557, 869
MroI TCCGGA 1 cut(s) 1109
MroNI GCCGGC 1 cut(s) 944
MroXI GAANNNNTTC 1 cut(s) 893
MscI TGGCCA 2 cut(s) 557, 869
MseI TTAA 2 cut(s) 1232, 1341
MslI CAYNNNNRTG 1 cut(s) 745
Msp20I TGGCCA 2 cut(s) 557, 869
MspA1I CMGCKG 2 cut(s) 171, 806
MvaI CCWGG 7 cut(s) 124, 454, 1331, 1539, 1551, 1601, 1682
MvnI CGCG 2 cut(s) 171, 180
NaeI GCCGGC 1 cut(s) 946
NciI CCSGG 6 cut(s) 305, 590, 614, 854, 1238, 1625
NcoI CCATGG 2 cut(s) 1184, 1635
NdeII GATC 7 cut(s) 58, 622, 684, 987, 1200, 1368, 1405
NgoMIV GCCGGC 1 cut(s) 944
NlaIII CATG 7 cut(s) 261, 874, 905, 1120, 1188, 1399, 1639
NlaIV GGNNCC 7 cut(s) 128, 184, 230, 462, 578, 707, 1019
NmeAIII GCCGAG 2 cut(s) 304, 1054
NmuCI GTSAC 3 cut(s) 1100, 1211, 1391
NspI RCATGY 1 cut(s) 261
PaeI GCATGC 1 cut(s) 261
PaeR7I CTCGAG 2 cut(s) 1250, 1519
PceI AGGCCT 1 cut(s) 1412
PdiI GCCGGC 1 cut(s) 946
PdmI GAANNNNTTC 1 cut(s) 893
PfeI GAWTC 7 cut(s) 310, 658, 719, 794, 841, 1447, 1507
Pfl23II CGTACG 1 cut(s) 175
PfoI TCCNGGA 3 cut(s) 303, 1599, 1680
PleI GAGTC 5 cut(s) 14, 447, 1261, 1511, 1537
PpsI GAGTC 5 cut(s) 14, 447, 1261, 1511, 1537
PpuMI RGGWCCY 1 cut(s) 298
PsiI TTATAA 2 cut(s) 849, 1271
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 7 cut(s) 122, 452, 1329, 1537, 1549, 1599, 1680
PspGI CCWGG 7 cut(s) 122, 452, 1329, 1537, 1549, 1599, 1680
PspLI CGTACG 1 cut(s) 175
PspN4I GGNNCC 7 cut(s) 128, 184, 230, 462, 578, 707, 1019
PspOMI GGGCCC 1 cut(s) 126
PspPI GGNCC 8 cut(s) 126, 127, 298, 396, 770, 1018, 1627, 1655
PspPPI RGGWCCY 1 cut(s) 298
PspXI VCTCGAGB 1 cut(s) 1519
PstNI CAGNNNCTG 1 cut(s) 1672
PsuI RGATCY 1 cut(s) 622
RsaI GTAC 5 cut(s) 78, 177, 578, 677, 926
RsaNI GTAC 5 cut(s) 77, 176, 577, 676, 925
RseI CAYNNNNRTG 1 cut(s) 745
Rsr2I CGGWCCG 1 cut(s) 770
RsrII CGGWCCG 1 cut(s) 770
SacII CCGCGG 1 cut(s) 172
SaqAI TTAA 2 cut(s) 1232, 1341
Sau3AI GATC 7 cut(s) 58, 622, 684, 987, 1200, 1368, 1405
Sau96I GGNCC 8 cut(s) 126, 127, 298, 396, 770, 1018, 1627, 1655
ScaI AGTACT 1 cut(s) 926
SchI GAGTC 5 cut(s) 14, 448, 1262, 1511, 1537
SduI GDGCHC 3 cut(s) 130, 710, 973
SfaNI GCATC 3 cut(s) 101, 544, 1471
SfiI GGCCNNNNNGGCC 1 cut(s) 563
Sfr274I CTCGAG 2 cut(s) 1250, 1519
Sfr303I CCGCGG 1 cut(s) 172
SgrBI CCGCGG 1 cut(s) 172
SinI GGWCC 3 cut(s) 298, 770, 1627
SlaI CTCGAG 2 cut(s) 1250, 1519
SmiMI CAYNNNNRTG 1 cut(s) 745
SmlI CTYRAG 5 cut(s) 149, 662, 1250, 1519, 1589
SmoI CTYRAG 5 cut(s) 149, 662, 1250, 1519, 1589
SphI GCATGC 1 cut(s) 261
Sse9I AATT 4 cut(s) 835, 1084, 1264, 1640
SseBI AGGCCT 1 cut(s) 1412
SspMI CTAG 2 cut(s) 254, 326
StuI AGGCCT 1 cut(s) 1412
StyI CCWWGG 3 cut(s) 483, 1184, 1635
TaaI ACNGT 2 cut(s) 770, 1010
TaiI ACGT 4 cut(s) 75, 267, 342, 1107
TaqI TCGA 6 cut(s) 57, 654, 717, 839, 1251, 1520
TasI AATT 4 cut(s) 835, 1084, 1264, 1640
TatI WGTACW 2 cut(s) 675, 924
TauI GCSGC 6 cut(s) 174, 183, 419, 491, 806, 982
TfiI GAWTC 7 cut(s) 310, 658, 719, 794, 841, 1447, 1507
Tru1I TTAA 2 cut(s) 1232, 1341
Tru9I TTAA 2 cut(s) 1232, 1341
TscAI CASTG 5 cut(s) 637, 1015, 1043, 1303, 1396
TseFI GTSAC 3 cut(s) 1100, 1211, 1391
TseI GCWGC 5 cut(s) 109, 218, 695, 962, 976
Tsp45I GTSAC 3 cut(s) 1100, 1211, 1391
TspDTI ATGAA 4 cut(s) 887, 921, 1094, 1133
TspRI CASTG 5 cut(s) 637, 1015, 1043, 1303, 1396
VpaK11BI GGWCC 3 cut(s) 298, 770, 1627
XagI CCTNNNNNAGG 2 cut(s) 1000, 1536
XapI RAATTY 1 cut(s) 835
XbaI TCTAGA 1 cut(s) 325
XceI RCATGY 1 cut(s) 261
XhoI CTCGAG 2 cut(s) 1250, 1519
XmiI GTMKAC 1 cut(s) 1526
XmnI GAANNNNTTC 1 cut(s) 893
XspI CTAG 2 cut(s) 254, 326
ZraI GACGTC 1 cut(s) 340
ZrmI AGTACT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.