MD14G1206600.v1.1

flavin-containing monooxygenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000255
Physical Location & Seq
Reverse (-)
29378040 .. 29378555
516 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1206600.v1.1.491

Sequence Viewer

Length: 516 bp
ATGAAGATACTGAACAACTCATGGGTTGTGTGTAACATCTCCAAATGCATGTACAGACTTGATCAGGATGTTTCGGTGGGTTTGGGGCTGTTGCTGTCTGAACTGAACGAAGAGAATGCCTGGAAAGGAAAGGTGATCAATTTCAGTCCAAACCCGAAGTTGCATTCGACACAAGGACTTGATGATCTCAAGTCCAGGTACGCCTTTTTGAGGAGGATGGACTGCGAGCACTGCCGTGTTGATTTCAGAAAGGTGTTTGATTTGATTCTGGAAGTGGCTGTGAACGAGAATTTGAAGACGGAGCAGATGATCAAGAGGGTGTTTGTGATCACCGGAGACTACGACTTTGGCTTTGATAAGGACGGCTTCTGGCGCTGGGAGAGTGATTACGAGGTAATCCGGAGCAAGTACAAAGAGAAAGGGTACGGCAAAGTGGTGCCACACTTGGTGGTTTGGAATCTGAAACATAACCTTTTTATGCCGCCATTCTGTGCTACACAACAAGAGTATGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0008150 GO:0008152 GO:0016491 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FMO-like NAD_binding_8

Protein Analysis

172

Amino Acids

20.14

Weight (kDa)

7.62

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 7 - 157 3.1e-38 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 436
AccIII TCCGGA 1 cut(s) 399
AciI CCGC 1 cut(s) 482
AcsI RAATTY 1 cut(s) 289
AdeI CACNNNGTG 1 cut(s) 448
AfaI GTAC 4 cut(s) 53, 200, 410, 425
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 295
AjnI CCWGG 2 cut(s) 119, 194
AleI CACNNNNGTG 1 cut(s) 234
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 330
Aor13HI TCCGGA 1 cut(s) 399
ApoI RAATTY 1 cut(s) 289
ArsI GACNNNNNNTTYG 4 cut(s) 329, 335, 361, 367
AspLEI GCGC 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 145, 322
BanI GGYRCC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 1 cut(s) 211
BceAI ACGGC 3 cut(s) 219, 379, 442
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 2 cut(s) 121, 196
BclI TGATCA 4 cut(s) 61, 135, 309, 327
BcoDI GTCTC 1 cut(s) 330
BfoI RGCGCY 1 cut(s) 376
BisI GCNGC 1 cut(s) 482
BlsI GCNGC 1 cut(s) 483
Bme1390I CCNGG 2 cut(s) 121, 196
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 2 cut(s) 121, 196
BpiI GAAGAC 1 cut(s) 302
BpuEI CTTGAG 1 cut(s) 173
BsaWI WCCGGW 2 cut(s) 332, 399
Bsc4I CCNNNNNNNGG 1 cut(s) 210
BseAI TCCGGA 1 cut(s) 399
BseBI CCWGG 2 cut(s) 121, 196
BseGI GGATG 2 cut(s) 73, 222
BseLI CCNNNNNNNGG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 226
BseYI CCCAGC 1 cut(s) 375
BshNI GGYRCC 1 cut(s) 436
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 2 cut(s) 333, 400
BslI CCNNNNNNNGG 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 330
BsmI GAATGC 2 cut(s) 121, 163
Bsp1286I GDGCHC 1 cut(s) 231
Bsp13I TCCGGA 1 cut(s) 399
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 5 cut(s) 61, 135, 184, 309, 327
BspACI CCGC 1 cut(s) 482
BspEI TCCGGA 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 436
BsrGI TGTACA 1 cut(s) 51
BssMI GATC 5 cut(s) 61, 135, 184, 309, 327
Bst2UI CCWGG 2 cut(s) 121, 196
Bst6I CTCTTC 1 cut(s) 105
BstAUI TGTACA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 227
BstENI CCTNNNNNAGG 1 cut(s) 208
BstF5I GGATG 2 cut(s) 73, 222
BstH2I RGCGCY 1 cut(s) 376
BstHHI GCGC 1 cut(s) 375
BstKTI GATC 5 cut(s) 64, 138, 187, 312, 330
BstMAI GTCTC 1 cut(s) 330
BstMBI GATC 5 cut(s) 61, 135, 184, 309, 327
BstMWI GCNNNNNNNGC 2 cut(s) 231, 372
BstNI CCWGG 2 cut(s) 121, 196
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 2 cut(s) 119, 194
BstV2I GAAGAC 1 cut(s) 302
BtsCI GGATG 2 cut(s) 73, 222
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 227
CfoI GCGC 1 cut(s) 375
Csp6I GTAC 4 cut(s) 52, 199, 409, 424
CviAII CATG 2 cut(s) 21, 49
CviJI RGCY 4 cut(s) 88, 278, 351, 366
CviKI_1 RGCY 4 cut(s) 88, 278, 351, 366
CviQI GTAC 4 cut(s) 52, 199, 409, 424
DpnI GATC 5 cut(s) 63, 137, 186, 311, 329
DpnII GATC 5 cut(s) 61, 135, 184, 309, 327
DraIII CACNNNGTG 1 cut(s) 448
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
EcoNI CCTNNNNNAGG 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 119, 194
EcoT22I ATGCAT 1 cut(s) 50
FaeI CATG 2 cut(s) 24, 52
FaiI YATR 5 cut(s) 22, 50, 468, 479, 510
FalI AAGNNNNNCTT 2 cut(s) 350, 382
FatI CATG 2 cut(s) 20, 48
FbaI TGATCA 4 cut(s) 61, 135, 309, 327
Fnu4HI GCNGC 1 cut(s) 482
FokI GGATG 2 cut(s) 80, 229
Fsp4HI GCNGC 1 cut(s) 482
GlaI GCGC 1 cut(s) 374
GluI GCNGC 1 cut(s) 482
GsaI CCCAGC 1 cut(s) 379
HaeII RGCGCY 1 cut(s) 376
HapII CCGG 2 cut(s) 333, 400
HhaI GCGC 1 cut(s) 375
Hin1II CATG 2 cut(s) 24, 52
Hin6I GCGC 1 cut(s) 373
HinP1I GCGC 1 cut(s) 373
HinfI GANTC 2 cut(s) 265, 457
HpaII CCGG 2 cut(s) 333, 400
HphI GGTGA 2 cut(s) 145, 322
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 3 cut(s) 100, 248, 462
Hpy188III TCNNGA 4 cut(s) 65, 269, 313, 400
Hpy8I GTNNAC 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 48, 163
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 372
Hsp92II CATG 2 cut(s) 24, 52
HspAI GCGC 1 cut(s) 373
Kpn2I TCCGGA 1 cut(s) 399
Ksp22I TGATCA 4 cut(s) 61, 135, 309, 327
Kzo9I GATC 5 cut(s) 61, 135, 184, 309, 327
LmnI GCTCC 2 cut(s) 301, 402
MaeIII GTNAC 1 cut(s) 32
MalI GATC 5 cut(s) 63, 137, 186, 311, 329
MboI GATC 5 cut(s) 61, 135, 184, 309, 327
MboII GAAGA 3 cut(s) 16, 122, 307
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 2 cut(s) 139, 289
MnlI CCTC 4 cut(s) 204, 207, 309, 385
Mph1103I ATGCAT 1 cut(s) 50
MroI TCCGGA 1 cut(s) 399
MslI CAYNNNNRTG 1 cut(s) 234
MspI CCGG 2 cut(s) 333, 400
MspR9I CCNGG 2 cut(s) 121, 196
Mva1269I GAATGC 2 cut(s) 121, 163
MvaI CCWGG 2 cut(s) 121, 196
MwoI GCNNNNNNNGC 2 cut(s) 231, 372
NdeII GATC 5 cut(s) 61, 135, 184, 309, 327
NlaIII CATG 2 cut(s) 24, 52
NlaIV GGNNCC 1 cut(s) 438
NsiI ATGCAT 1 cut(s) 50
NspI RCATGY 1 cut(s) 52
OliI CACNNNNGTG 1 cut(s) 234
PctI GAATGC 2 cut(s) 121, 163
PfeI GAWTC 2 cut(s) 265, 457
PkrI GCNGC 1 cut(s) 483
Psp6I CCWGG 2 cut(s) 119, 194
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 2 cut(s) 119, 194
PspN4I GGNNCC 1 cut(s) 438
RsaI GTAC 4 cut(s) 53, 200, 410, 425
RsaNI GTAC 4 cut(s) 52, 199, 409, 424
RseI CAYNNNNRTG 1 cut(s) 234
SatI GCNGC 1 cut(s) 482
Sau3AI GATC 5 cut(s) 61, 135, 184, 309, 327
ScrFI CCNGG 2 cut(s) 121, 196
SduI GDGCHC 1 cut(s) 231
SetI ASST 5 cut(s) 135, 200, 255, 396, 474
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 2 cut(s) 139, 289
SsiI CCGC 1 cut(s) 482
StyD4I CCNGG 2 cut(s) 119, 194
TaqI TCGA 1 cut(s) 167
TasI AATT 2 cut(s) 139, 289
TatI WGTACW 2 cut(s) 51, 408
TauI GCSGC 1 cut(s) 484
TfiI GAWTC 2 cut(s) 265, 457
TscAI CASTG 1 cut(s) 236
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 236
XagI CCTNNNNNAGG 1 cut(s) 208
XapI RAATTY 1 cut(s) 289
XceI RCATGY 1 cut(s) 52
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.