MD05G1259500.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000255
Physical Location & Seq
Forward (+)
39521098 .. 39521436
339 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1259500.v1.1.491

Sequence Viewer

Length: 339 bp
ATGGTCAAGAAGGTGCTTGCCTTGACCACATACAAACATTTCTTGACAGGCAGCAACTTCAGCTTCTGGGGGGAGACTAATTACGAGGAAATACGGAACAAGTATAAGGAGAAGGGGTATGGAGAAGTGGTGCCACACCTAGTCTTTTGGAATATGATCAAACCTGAGTATTCGGCTGGGCATTGTAGAGAACCAGAACCAGGGGTGACGTTGTTGAGTGGCTTCTCGTACAAGCTGCTCGAGTCCTTCTTCGAAAATGATGGTGACATCGGCCCCAACCATGTCATGGAAGCTGCTGTATCTGCCCCAGCCTATCAAACTCTGGCAGTAGTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

113

Amino Acids

12.68

Weight (kDa)

5.52

Isoelectric Point (pI)

17.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 1 - 90 1.2e-14 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AccB7I CCANNNNNTGG 1 cut(s) 286
AccI GTMKAC 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 43
AfaI GTAC 1 cut(s) 230
AfiI CCNNNNNNNGG 2 cut(s) 200, 286
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 3 cut(s) 63, 235, 293
AluI AGCT 3 cut(s) 63, 235, 293
Alw26I GTCTC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 66
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 3 cut(s) 51, 235, 293
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 2 cut(s) 217, 275
AsuII TTCGAA 1 cut(s) 252
AvaI CYCGRG 1 cut(s) 239
BanI GGYRCC 1 cut(s) 130
BbvI GCAGC 3 cut(s) 63, 222, 280
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 201
BclI TGATCA 1 cut(s) 156
BcoDI GTCTC 1 cut(s) 68
BfaI CTAG 1 cut(s) 140
BisI GCNGC 3 cut(s) 52, 236, 294
BlsI GCNGC 3 cut(s) 53, 237, 295
Bme1390I CCNGG 1 cut(s) 201
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 132, 274
BmrFI CCNGG 1 cut(s) 201
Bpu14I TTCGAA 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 200
BsaXI ACNNNNNCTCC 4 cut(s) 101, 114, 131, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 286
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 200
BseLI CCNNNNNNNGG 2 cut(s) 200, 286
BseMII CTCAG 1 cut(s) 156
BseXI GCAGC 3 cut(s) 63, 222, 280
BseYI CCCAGC 2 cut(s) 176, 307
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 1 cut(s) 130
BsiHKCI CYCGRG 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 200, 286
BsmAI GTCTC 1 cut(s) 68
BsnI GGCC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 239
Bsp119I TTCGAA 1 cut(s) 252
Bsp143I GATC 1 cut(s) 156
BspANI GGCC 1 cut(s) 273
BspCNI CTCAG 1 cut(s) 157
BspLI GGNNCC 2 cut(s) 132, 274
BspT104I TTCGAA 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 201
BstBI TTCGAA 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 18
BstDEI CTNAG 1 cut(s) 165
BstKTI GATC 1 cut(s) 159
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 60, 302
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstV1I GCAGC 3 cut(s) 63, 222, 280
BsuRI GGCC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 18
CaiI CAGNNNCTG 1 cut(s) 66
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 229
CviAII CATG 2 cut(s) 281, 286
CviJI RGCY 7 cut(s) 63, 176, 222, 235, 273, 293, 311
CviKI_1 RGCY 7 cut(s) 63, 176, 222, 235, 273, 293, 311
CviQI GTAC 1 cut(s) 229
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 43
Eco88I CYCGRG 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 199
FaeI CATG 2 cut(s) 284, 289
FaiI YATR 6 cut(s) 31, 105, 120, 155, 282, 287
FatI CATG 2 cut(s) 280, 285
FbaI TGATCA 1 cut(s) 156
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 3 cut(s) 52, 236, 294
Fsp4HI GCNGC 3 cut(s) 52, 236, 294
FspBI CTAG 1 cut(s) 140
GluI GCNGC 3 cut(s) 52, 236, 294
GsaI CCCAGC 2 cut(s) 180, 311
HaeIII GGCC 1 cut(s) 273
Hin1II CATG 2 cut(s) 284, 289
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 1 cut(s) 242
HphI GGTGA 2 cut(s) 217, 275
Hpy166II GTNNAC 1 cut(s) 334
Hpy188III TCNNGA 2 cut(s) 7, 43
Hpy8I GTNNAC 1 cut(s) 334
HpyAV CCTTC 3 cut(s) 4, 106, 256
HpyCH4IV ACGT 1 cut(s) 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 302
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 2 cut(s) 284, 289
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 9 cut(s) 33, 52, 162, 177, 186, 207, 213, 308, 321
Lsp1109I GCAGC 3 cut(s) 63, 222, 280
MaeI CTAG 1 cut(s) 140
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 2 cut(s) 205, 263
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 1 cut(s) 241
MluCI AATT 1 cut(s) 79
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 60, 302
NdeII GATC 1 cut(s) 156
NlaIII CATG 2 cut(s) 284, 289
NlaIV GGNNCC 2 cut(s) 132, 274
NmuCI GTSAC 2 cut(s) 205, 263
NspV TTCGAA 1 cut(s) 252
PaeR7I CTCGAG 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 3 cut(s) 53, 237, 295
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
Psp6I CCWGG 1 cut(s) 199
PspFI CCCAGC 2 cut(s) 176, 307
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 2 cut(s) 132, 274
PspPI GGNCC 1 cut(s) 272
PspXI VCTCGAGB 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 66
RsaI GTAC 1 cut(s) 230
RsaNI GTAC 1 cut(s) 229
SalI GTCGAC 1 cut(s) 332
SatI GCNGC 3 cut(s) 52, 236, 294
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 201
SetI ASST 7 cut(s) 15, 65, 141, 166, 212, 237, 295
Sfr274I CTCGAG 1 cut(s) 239
SfuI TTCGAA 1 cut(s) 252
SlaI CTCGAG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 79
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 199
TaiI ACGT 1 cut(s) 212
TaqI TCGA 3 cut(s) 240, 252, 333
TasI AATT 1 cut(s) 79
TseFI GTSAC 2 cut(s) 205, 263
TseI GCWGC 3 cut(s) 51, 235, 293
Tsp45I GTSAC 2 cut(s) 205, 263
TspGWI ACGGA 1 cut(s) 109
Van91I CCANNNNNTGG 1 cut(s) 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XhoI CTCGAG 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.