pycom06g19020

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000255
Physical Location & Seq
Reverse (-)
22555692 .. 22556513
822 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g19020.1

Sequence Viewer

Length: 822 bp
ATGAAGTTTTACAAGGAGAAATTCTTGAAGCACGATGAGGAGAGGTTTAAGAAGTATTTGGCGGATGTTAAGGCAGGAAAGTCCACTATTGCTGCGGGTGCTCTGCTTCCGCACGAGATCATAGAGTCTCTGAATCATGGAGATGGCGGTCAGGTGGCCGAGCTTCAATGGAAGAGAATAGTGGATGATCTGTTGAAGCAAGGGAAGATGAAGAACTGTTTGGCTGTGTGTGACGTCTCCGGCAGCATGAATGGGACCCCGATGGAGGTTTCCGTGGCTTTGGGATTGTTGGTGTCCGAACTGATTGATGAGCCATGGAAGGGGAATGTCATCACTTTCAGTCACAACCCTCAGCTGCATCAGATACAAGGCCATGATCTAAGCTCCAAGTGCAACTTTATAAGGACGATGGAATGGGGATGCAACACGAATTTCCAAAAGGTGTTTGATTTGATTCTCCAAGTGGCGGTGAACGGGAAATTGAAGCCAGAGCAGATGATAAAGAGGATCTTCGTGTTTAGCGACATGGAGTTTGATCAGGCTTCAACTAGCGGGCCTTGGGAGACTGATTACCAGGCTATACAGAGGAAGTATACTGAGAAAGGGTATGGGAATGCGGTGCCGCAGATTATCTTCTGGAATCTGAGGCATTCGAATTCTACGCCAATGCCGAGCAACCAACCAGGAGTGGCATTGTTGAGTGGCTTCTCCAAGAATTTGATGAAGCTGTTCTTGGACAACGAGGGAGAGGTTCGCCCGGACCTTGTCATGGAAGCAGCCATTTCTGGGGAAGAATATCAGAAGCTTGCCGTGCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

274

Amino Acids

30.74

Weight (kDa)

6.01

Isoelectric Point (pI)

25.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 1 - 70 4.1e-21 Domain of unknown function (DUF2828)
DUF7788 PF25043 72 - 251 4.1e-80 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AatII GACGTC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 619
AccI GTMKAC 1 cut(s) 593
AciI CCGC 8 cut(s) 62, 95, 110, 147, 467, 552, 617, 623
AclWI GGATC 1 cut(s) 515
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 4 cut(s) 20, 430, 655, 715
AcyI GRCGYC 1 cut(s) 234
AfiI CCNNNNNNNGG 5 cut(s) 265, 320, 466, 769, 786
AgsI TTSAA 5 cut(s) 28, 167, 196, 484, 546
AjnI CCWGG 2 cut(s) 573, 682
AjuI GAANNNNNNNTTGG 4 cut(s) 203, 235, 716, 748
AluBI AGCT 5 cut(s) 163, 355, 384, 727, 805
AluI AGCT 5 cut(s) 163, 355, 384, 727, 805
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 3 cut(s) 132, 241, 557
AlwI GGATC 1 cut(s) 515
AoxI GGCC 3 cut(s) 156, 370, 554
ApeKI GCWGC 4 cut(s) 92, 243, 355, 776
ApoI RAATTY 4 cut(s) 20, 430, 655, 715
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
Asp700I GAANNNNTTC 1 cut(s) 728
AspS9I GGNCC 3 cut(s) 255, 554, 760
AsuC2I CCSGG 1 cut(s) 758
AsuHPI GGTGA 1 cut(s) 481
AsuII TTCGAA 1 cut(s) 653
AvaII GGWCC 2 cut(s) 255, 760
BanI GGYRCC 1 cut(s) 619
BauI CACGAG 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 103
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 4 cut(s) 79, 255, 342, 788
BccI CCATC 3 cut(s) 137, 256, 403
BceAI ACGGC 1 cut(s) 794
BciT130I CCWGG 2 cut(s) 575, 684
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 1 cut(s) 758
BcoDI GTCTC 3 cut(s) 132, 241, 557
BfaI CTAG 1 cut(s) 549
BisI GCNGC 5 cut(s) 93, 244, 356, 623, 777
BlsI GCNGC 5 cut(s) 94, 245, 357, 624, 778
Bme1390I CCNGG 3 cut(s) 575, 684, 758
Bme18I GGWCC 2 cut(s) 255, 760
BmgT120I GGNCC 3 cut(s) 255, 554, 760
BmiI GGNNCC 3 cut(s) 256, 257, 621
BmrFI CCNGG 3 cut(s) 575, 684, 758
BmsI GCATC 2 cut(s) 367, 410
Bpu10I CCTNAGC 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 653
BpuMI CCSGG 1 cut(s) 758
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 3 cut(s) 273, 314, 557
Bsc4I CCNNNNNNNGG 5 cut(s) 265, 320, 466, 769, 786
BseBI CCWGG 2 cut(s) 575, 684
BseDI CCNNGG 3 cut(s) 273, 314, 557
BseGI GGATG 3 cut(s) 70, 190, 425
BseLI CCNNNNNNNGG 5 cut(s) 265, 320, 466, 769, 786
BseMII CTCAG 3 cut(s) 365, 588, 635
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 4 cut(s) 79, 255, 342, 788
BshFI GGCC 3 cut(s) 158, 372, 556
BshNI GGYRCC 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 103
BsiSI CCGG 2 cut(s) 240, 758
BslFI GGGAC 1 cut(s) 268
BslI CCNNNNNNNGG 5 cut(s) 265, 320, 466, 769, 786
BsmAI GTCTC 3 cut(s) 132, 241, 557
BsmBI CGTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 268
BsmI GAATGC 2 cut(s) 619, 649
BsnI GGCC 3 cut(s) 158, 372, 556
Bsp119I TTCGAA 1 cut(s) 653
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 5 cut(s) 117, 187, 376, 507, 535
Bsp19I CCATGG 1 cut(s) 314
BspACI CCGC 8 cut(s) 62, 95, 110, 147, 467, 552, 617, 623
BspANI GGCC 3 cut(s) 158, 372, 556
BspCNI CTCAG 3 cut(s) 364, 589, 636
BspLI GGNNCC 3 cut(s) 256, 257, 621
BspPI GGATC 1 cut(s) 515
BspT104I TTCGAA 1 cut(s) 653
BspT107I GGYRCC 1 cut(s) 619
BssECI CCNNGG 3 cut(s) 273, 314, 557
BssMI GATC 5 cut(s) 117, 187, 376, 507, 535
BssNAI GTATAC 1 cut(s) 594
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 113
BssT1I CCWWGG 2 cut(s) 314, 557
Bst1107I GTATAC 1 cut(s) 594
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 575, 684
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 167
BstACI GRCGYC 1 cut(s) 234
BstBI TTCGAA 1 cut(s) 653
BstC8I GCNNGC 2 cut(s) 554, 807
BstDEI CTNAG 4 cut(s) 351, 380, 597, 644
BstDSI CCRYGG 2 cut(s) 273, 314
BstF5I GGATG 3 cut(s) 70, 190, 425
BstKTI GATC 5 cut(s) 120, 190, 379, 510, 538
BstMAI GTCTC 3 cut(s) 132, 241, 557
BstMBI GATC 5 cut(s) 117, 187, 376, 507, 535
BstMWI GCNNNNNNNGC 3 cut(s) 98, 390, 811
BstNI CCWGG 2 cut(s) 575, 684
BstSCI CCNGG 3 cut(s) 573, 682, 756
BstV1I GCAGC 4 cut(s) 79, 255, 342, 788
BstX2I RGATCY 1 cut(s) 507
BstYI RGATCY 1 cut(s) 507
BstZ17I GTATAC 1 cut(s) 594
BsuRI GGCC 3 cut(s) 158, 372, 556
BtgI CCRYGG 2 cut(s) 273, 314
BtsCI GGATG 3 cut(s) 70, 190, 425
Cac8I GCNNGC 2 cut(s) 554, 807
Cfr13I GGNCC 3 cut(s) 255, 554, 760
CviAII CATG 6 cut(s) 137, 247, 315, 374, 526, 769
DdeI CTNAG 4 cut(s) 351, 380, 597, 644
DpnI GATC 5 cut(s) 119, 189, 378, 509, 537
DpnII GATC 5 cut(s) 117, 187, 376, 507, 535
EaeI YGGCCR 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
EciI GGCGGA 1 cut(s) 77
Eco130I CCWWGG 2 cut(s) 314, 557
Eco47I GGWCC 2 cut(s) 255, 760
EcoO109I RGGNCCY 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 655
EcoRII CCWGG 2 cut(s) 573, 682
EcoT14I CCWWGG 2 cut(s) 314, 557
ErhI CCWWGG 2 cut(s) 314, 557
Esp3I CGTCTC 1 cut(s) 241
FaeI CATG 6 cut(s) 140, 250, 318, 377, 529, 772
FalI AAGNNNNNCTT 6 cut(s) 380, 412, 494, 526, 716, 748
FaqI GGGAC 1 cut(s) 268
FatI CATG 6 cut(s) 136, 246, 314, 373, 525, 768
FauI CCCGC 2 cut(s) 88, 545
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 593
Fnu4HI GCNGC 5 cut(s) 93, 244, 356, 623, 777
FokI GGATG 3 cut(s) 77, 197, 432
Fsp4HI GCNGC 5 cut(s) 93, 244, 356, 623, 777
FspBI CTAG 1 cut(s) 549
GluI GCNGC 5 cut(s) 93, 244, 356, 623, 777
HaeIII GGCC 3 cut(s) 158, 372, 556
HapII CCGG 2 cut(s) 240, 758
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 6 cut(s) 140, 250, 318, 377, 529, 772
HindIII AAGCTT 1 cut(s) 803
HinfI GANTC 4 cut(s) 125, 133, 454, 640
HpaII CCGG 2 cut(s) 240, 758
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 3 cut(s) 84, 472, 594
Hpy188I TCNGA 5 cut(s) 132, 298, 363, 645, 801
Hpy188III TCNNGA 2 cut(s) 25, 637
Hpy8I GTNNAC 3 cut(s) 84, 472, 594
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 358, 393, 423
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 390, 811
HpyF3I CTNAG 4 cut(s) 351, 380, 597, 644
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 6 cut(s) 140, 250, 318, 377, 529, 772
KflI GGGWCCC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 5 cut(s) 117, 187, 376, 507, 535
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 4 cut(s) 79, 255, 342, 788
LweI GCATC 2 cut(s) 367, 410
MaeI CTAG 1 cut(s) 549
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 230, 341
MalI GATC 5 cut(s) 119, 189, 378, 509, 537
MboI GATC 5 cut(s) 117, 187, 376, 507, 535
MboII GAAGA 6 cut(s) 184, 217, 223, 502, 625, 803
MflI RGATCY 1 cut(s) 507
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 5 cut(s) 20, 430, 479, 655, 715
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 9 cut(s) 31, 36, 259, 360, 498, 579, 639, 736, 742
MroXI GAANNNNTTC 1 cut(s) 728
MseI TTAA 2 cut(s) 48, 69
MslI CAYNNNNRTG 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 355
MspI CCGG 2 cut(s) 240, 758
MspR9I CCNGG 3 cut(s) 575, 684, 758
Mva1269I GAATGC 2 cut(s) 619, 649
MvaI CCWGG 2 cut(s) 575, 684
MwoI GCNNNNNNNGC 3 cut(s) 98, 390, 811
NciI CCSGG 1 cut(s) 758
NcoI CCATGG 1 cut(s) 314
NdeII GATC 5 cut(s) 117, 187, 376, 507, 535
NlaIII CATG 6 cut(s) 140, 250, 318, 377, 529, 772
NlaIV GGNNCC 3 cut(s) 256, 257, 621
NmeAIII GCCGAG 2 cut(s) 184, 696
NmuCI GTSAC 2 cut(s) 230, 341
NspV TTCGAA 1 cut(s) 653
PcsI WCGNNNNNNNCGW 2 cut(s) 519, 668
PctI GAATGC 2 cut(s) 619, 649
PdmI GAANNNNTTC 1 cut(s) 728
PfeI GAWTC 3 cut(s) 133, 454, 640
PflFI GACNNNGTC 1 cut(s) 764
PkrI GCNGC 5 cut(s) 94, 245, 357, 624, 778
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PpuMI RGGWCCY 1 cut(s) 255
PsiI TTATAA 1 cut(s) 401
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 2 cut(s) 573, 682
PspGI CCWGG 2 cut(s) 573, 682
PspN4I GGNNCC 3 cut(s) 256, 257, 621
PspPI GGNCC 3 cut(s) 255, 554, 760
PspPPI RGGWCCY 1 cut(s) 255
PsuI RGATCY 1 cut(s) 507
PsyI GACNNNGTC 1 cut(s) 764
PvuII CAGCTG 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 2 cut(s) 48, 69
SatI GCNGC 5 cut(s) 93, 244, 356, 623, 777
Sau3AI GATC 5 cut(s) 117, 187, 376, 507, 535
Sau96I GGNCC 3 cut(s) 255, 554, 760
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 575, 684, 758
SduI GDGCHC 1 cut(s) 103
SfaNI GCATC 2 cut(s) 367, 410
SfuI TTCGAA 1 cut(s) 653
SinI GGWCC 2 cut(s) 255, 760
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 5 cut(s) 20, 430, 479, 655, 715
SsiI CCGC 8 cut(s) 62, 95, 110, 147, 467, 552, 617, 623
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 3 cut(s) 573, 682, 756
StyI CCWWGG 2 cut(s) 314, 557
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 653
TasI AATT 5 cut(s) 20, 430, 479, 655, 715
TauI GCSGC 1 cut(s) 625
TfiI GAWTC 3 cut(s) 133, 454, 640
Tru1I TTAA 2 cut(s) 48, 69
Tru9I TTAA 2 cut(s) 48, 69
TseFI GTSAC 2 cut(s) 230, 341
TseI GCWGC 4 cut(s) 92, 243, 355, 776
Tsp45I GTSAC 2 cut(s) 230, 341
TspDTI ATGAA 4 cut(s) 17, 224, 263, 737
TspGWI ACGGA 1 cut(s) 262
Tth111I GACNNNGTC 1 cut(s) 764
VpaK11BI GGWCC 2 cut(s) 255, 760
XapI RAATTY 4 cut(s) 20, 430, 655, 715
XmiI GTMKAC 1 cut(s) 593
XmnI GAANNNNTTC 1 cut(s) 728
XspI CTAG 1 cut(s) 549
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.