Rw7G005850

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000255
Physical Location & Seq
Reverse (-)
4907050 .. 4908912
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G005850.1

Sequence Viewer

Length: 1863 bp
ATGGGCTTCACCGAGAACGGCTCAGCCACATTCGTCACCACCGGCGATCCTTGCCTCGATCTCTTCTTCCACGTCGTCCCCAACACTCCGGCGTCGTATCTGAACCAGCAGCTCCCTCTGGCCTGGGCCCACAACGCCCTCACCACCCTCAAGCTCATCTGCAACCTCCGCGGCGTACGTGGCACCGGCAAGTCTGACAAAGAAGGATTCTACACGGCGGCGTTTTGGCTCCACAAGAACCACCCCAAAACCCTAGCCTGCAACGTCGCGTCCCTCGCCGAGTTCGGGTATTTCAAGGACCTGCCGGAGATTCTGTACCGCCTTCTAGAAGGTGAGGATGTGAGGAAGAAGCTGAAGTCCGAGTGGCTGCAGAGGAAGTCCGGCAGGGGTAGGGTTCGGACGGCGGCGGTTCCATTCTCCAGAGGAGGTCGCGGCGGCGGCGGTGCTAAAAAGAGAACCAAGAGCGGTGGCCGGAGAGGAAACAACAGCCGTGTGGCTAGGGAGGTGAGGGTGCTGAACTCAATGGAGAGGGCAAAATCGGAAAAGGAAAAGGCCTCTGCTTTGAGGAAGGAGAAGTTCGCAGCCATGGCCAAGAAGGCTGTTGAGAGGTACCAGCGTGACCCGGACTACAGATTCTTGCACGAACGGGTTTCGGATCTTTTCGCAGAGTGCTTGAAATCGGATATGGAGAATTTGAAGTCCAATCAGTACAAGAAGATTAGCCTTGCGGCGAAATGGTGTCCTTCTCTGGACTCGTCTTTTGATCGAGCCACACTGCTCTGTGAGAGCATTGCCAGGAAGGTTTTCACCCGGGAATCGCATCCGGAATATGAAGGAATTGAGGATGCACATTATGCTTATAGAGTCCGAGACCGGCTGAGGAAGGATGTGTTGGTGCCATTGAGGATAGTGTTGGAGTTGCCGGAGGTTTATATGGGTGCCAATCTGTGGGGTGCCATTCCTTACAACAGAGTGGCCTCTGTGGCGATGAAGCTCTACAAGAAGAAGTTCTTGAAGCATGATGAGGAGAGGTTTAAGAAGTATTTGGAGGATGTCAAGGCCGGGAAGTCTACTATTGCGGCAGGTGCTCTGCTTCCGCATGAGATCATAGCCTCTCTGAATGATGGGGATGGAGGGCAGGTGGCCGAGCTTCAGTGGAAGAGAGTGGTGGATGACTTGTTGAAGGAGGGCACGATGAAGAACTGCTTGGCTGTGTGTGATGTGTCCGGAAGCATGAATGGGACTCCTATGGATGTGTGTGTTGCTTTGGGGATGTTGGTGGCTGAGTTGAATGAGGAGCCATGGAAAGGGAAGGTGATCACATTCAGTGCCAATCCTCAGCTTCACTTGATACAAGGCAATGATCTAAGCTCCAAGTCTGAGTTTGTGAAGCGAATGGACTGGGGAGGCAACACTGATTTTCAGAAGGTGTTTGATTTGATCCTCCAAGTGGCTGTGAAGGGGAATCTGAAGCCGGAGCAAATGATTAAGAGGGTGTTTGTTTTCAGTGACATGGAATTTGATCAGGCTTCGGGCTATGGTTATGGTTATGGAGGATATGGATATGGGCGGTTCGGAAGTAATGATGTTCCAAGGGGATGGGAGACTGATTATGAGGTGATTCAGAGGAAGTACAGGGAGAAAGGGTATGGTGATGCGGTGCCACAGATAGTGTTTTGGAATCTAAGGGACTCGAAGGCTACTCCCGTGCCTGGGACTCAACCAGGAGTGGCGCTACTGAGTGGCTTCTCCAAGAATTTGCTCAAGCTCTTCTTGGATAATGATGGGGAGATTCGCCCTGACACAACCATGGAAGCAGCAATCTCGGGTCCAGAGTATCAGAAGCTGGTTGTGCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

620

Amino Acids

69.62

Weight (kDa)

9.2

Isoelectric Point (pI)

26.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 4 - 399 6.2e-138 Domain of unknown function (DUF2828)
DUF7788 PF25043 401 - 599 1.1e-78 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1073, 1129
Acc36I ACCTGC 3 cut(s) 309, 1073, 1129
Acc65I GGTACC 1 cut(s) 609
AccB1I GGYRCC 6 cut(s) 182, 609, 895, 938, 953, 1660
AccB7I CCANNNNNTGG 1 cut(s) 948
AccBSI CCGCTC 1 cut(s) 465
AccI GTMKAC 1 cut(s) 1070
AccII CGCG 3 cut(s) 171, 269, 432
AccIII TCCGGA 2 cut(s) 823, 1226
AclWI GGATC 3 cut(s) 41, 663, 1435
AcoI YGGCCR 3 cut(s) 469, 588, 1143
AcsI RAATTY 3 cut(s) 691, 1517, 1756
AcuI CTGAAG 3 cut(s) 374, 1136, 1490
AcyI GRCGYC 1 cut(s) 92
AfaI GTAC 5 cut(s) 177, 317, 611, 710, 1634
AfiI CCNNNNNNNGG 6 cut(s) 285, 948, 1307, 1450, 1712, 1713
AgsI TTSAA 6 cut(s) 295, 676, 697, 1015, 1183, 1291
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 4 cut(s) 122, 794, 1711, 1723
AjuI GAANNNNNNNTTGG 4 cut(s) 875, 907, 1190, 1222
AluBI AGCT 9 cut(s) 112, 154, 352, 994, 1150, 1342, 1371, 1768, 1846
AluI AGCT 9 cut(s) 112, 154, 352, 994, 1150, 1342, 1371, 1768, 1846
Alw21I GWGCWC 1 cut(s) 1090
Alw26I GTCTC 2 cut(s) 864, 1598
AlwI GGATC 3 cut(s) 41, 663, 1435
AlwNI CAGNNNCTG 1 cut(s) 1846
Ama87I CYCGRG 2 cut(s) 810, 1825
Aor13HI TCCGGA 2 cut(s) 823, 1226
AoxI GGCC 8 cut(s) 120, 126, 469, 552, 588, 975, 1059, 1143
ApaI GGGCCC 1 cut(s) 130
ApeKI GCWGC 4 cut(s) 109, 367, 581, 1817
ApoI RAATTY 3 cut(s) 691, 1517, 1756
ArsI GACNNNNNNTTYG 4 cut(s) 743, 775, 1502, 1534
Asp700I GAANNNNTTC 2 cut(s) 803, 1007
Asp718I GGTACC 1 cut(s) 609
AspLEI GCGC 1 cut(s) 1735
AspS9I GGNCC 4 cut(s) 126, 127, 298, 1829
AsuC2I CCSGG 4 cut(s) 623, 811, 812, 1063
AsuHPI GGTGA 8 cut(s) 28, 133, 344, 517, 799, 1327, 1630, 1664
AvaI CYCGRG 2 cut(s) 810, 1825
AvaII GGWCC 2 cut(s) 298, 1829
BaeGI GKGCMC 2 cut(s) 130, 1193
BaeI ACNNNNGTAYC 2 cut(s) 601, 634
BalI TGGCCA 1 cut(s) 590
BanI GGYRCC 6 cut(s) 182, 609, 895, 938, 953, 1660
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 1090
BbvCI CCTCAGC 2 cut(s) 878, 1338
BbvI GCAGC 4 cut(s) 121, 354, 593, 1829
BccI CCATC 4 cut(s) 1118, 1124, 1593, 1778
BceAI ACGGC 4 cut(s) 34, 231, 417, 474
BcgI CGANNNNNNTGC 2 cut(s) 1806, 1840
BciT130I CCWGG 4 cut(s) 124, 796, 1713, 1725
BclI TGATCA 2 cut(s) 1317, 1522
BcnI CCSGG 4 cut(s) 623, 811, 812, 1063
BcoDI GTCTC 2 cut(s) 864, 1598
BfaI CTAG 3 cut(s) 254, 326, 498
BfmI CTRYAG 2 cut(s) 368, 628
BfoI RGCGCY 1 cut(s) 1736
BfuAI ACCTGC 3 cut(s) 309, 1073, 1129
BglI GCCNNNNNGGC 2 cut(s) 596, 983
BlpI GCTNAGC 1 cut(s) 22
Bme1390I CCNGG 8 cut(s) 124, 623, 796, 811, 812, 1063, 1713, 1725
Bme18I GGWCC 2 cut(s) 298, 1829
BmeT110I CYCGRG 2 cut(s) 810, 1825
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 4 cut(s) 126, 127, 298, 1829
BmrFI CCNGG 8 cut(s) 124, 623, 796, 811, 812, 1063, 1713, 1725
BmrI ACTGGG 1 cut(s) 1411
BmsI GCATC 3 cut(s) 829, 835, 1645
BmuI ACTGGG 1 cut(s) 1411
BplI GAGNNNNNCTC 1 cut(s) 37
BpmI CTGGAG 1 cut(s) 403
Bpu10I CCTNAGC 2 cut(s) 878, 1338
Bpu1102I GCTNAGC 1 cut(s) 22
BpuEI CTTGAG 2 cut(s) 134, 1748
BpuMI CCSGG 4 cut(s) 623, 811, 812, 1063
BsaAI YACGTR 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 864
BsaJI CCNNGG 8 cut(s) 123, 169, 585, 810, 1301, 1592, 1712, 1809
BsaWI WCCGGW 2 cut(s) 823, 1226
BsaXI ACNNNNNCTCC 6 cut(s) 299, 329, 1125, 1155, 1631, 1661
Bsc4I CCNNNNNNNGG 6 cut(s) 285, 948, 1307, 1450, 1712, 1713
Bse118I RCCGGY 3 cut(s) 41, 185, 873
Bse1I ACTGG 1 cut(s) 1406
Bse3DI GCAATG 2 cut(s) 789, 1366
BseAI TCCGGA 2 cut(s) 823, 1226
BseBI CCWGG 4 cut(s) 124, 796, 1713, 1725
BseDI CCNNGG 8 cut(s) 123, 169, 585, 810, 1301, 1592, 1712, 1809
BseLI CCNNNNNNNGG 6 cut(s) 285, 948, 1307, 1450, 1712, 1713
BseMI GCAATG 2 cut(s) 789, 1366
BseMII CTCAG 6 cut(s) 36, 869, 1275, 1352, 1371, 1730
BseNI ACTGG 1 cut(s) 1406
BseRI GAGGAG 3 cut(s) 438, 1040, 1310
BseSI GKGCMC 2 cut(s) 130, 1193
BseXI GCAGC 4 cut(s) 121, 354, 593, 1829
Bsh1236I CGCG 3 cut(s) 171, 269, 432
BshFI GGCC 8 cut(s) 122, 128, 471, 554, 590, 977, 1061, 1145
BshNI GGYRCC 6 cut(s) 182, 609, 895, 938, 953, 1660
BsiHKAI GWGCWC 1 cut(s) 1090
BsiHKCI CYCGRG 2 cut(s) 810, 1825
BsiWI CGTACG 1 cut(s) 175
BslFI GGGAC 5 cut(s) 62, 256, 1255, 1703, 1729
BslI CCNNNNNNNGG 6 cut(s) 285, 948, 1307, 1450, 1712, 1713
BsmAI GTCTC 2 cut(s) 864, 1598
BsmFI GGGAC 5 cut(s) 62, 256, 1255, 1703, 1729
BsnI GGCC 8 cut(s) 122, 128, 471, 554, 590, 977, 1061, 1145
Bso31I GGTCTC 1 cut(s) 864
BsoBI CYCGRG 2 cut(s) 810, 1825
Bsp120I GGGCCC 1 cut(s) 126
Bsp1286I GDGCHC 3 cut(s) 130, 1090, 1193
Bsp13I TCCGGA 2 cut(s) 823, 1226
Bsp143I GATC 9 cut(s) 46, 58, 655, 763, 1104, 1317, 1363, 1440, 1522
Bsp1720I GCTNAGC 1 cut(s) 22
Bsp19I CCATGG 3 cut(s) 585, 1301, 1809
BspANI GGCC 8 cut(s) 122, 128, 471, 554, 590, 977, 1061, 1145
BspCNI CTCAG 6 cut(s) 35, 870, 1276, 1351, 1372, 1731
BspEI TCCGGA 2 cut(s) 823, 1226
BspFNI CGCG 3 cut(s) 171, 269, 432
BspMAI CTGCAG 1 cut(s) 372
BspMI ACCTGC 3 cut(s) 309, 1073, 1129
BspPI GGATC 3 cut(s) 41, 663, 1435
BspQI GCTCTTC 1 cut(s) 1775
BspT107I GGYRCC 6 cut(s) 182, 609, 895, 938, 953, 1660
BspTNI GGTCTC 1 cut(s) 864
BsrBI CCGCTC 1 cut(s) 465
BsrDI GCAATG 2 cut(s) 789, 1366
BsrFI RCCGGY 3 cut(s) 41, 185, 873
BsrI ACTGG 1 cut(s) 1406
BssAI RCCGGY 3 cut(s) 41, 185, 873
BssECI CCNNGG 8 cut(s) 123, 169, 585, 810, 1301, 1592, 1712, 1809
BssMI GATC 9 cut(s) 46, 58, 655, 763, 1104, 1317, 1363, 1440, 1522
BssNI GRCGYC 1 cut(s) 92
BssT1I CCWWGG 4 cut(s) 585, 1301, 1592, 1809
Bst2UI CCWGG 4 cut(s) 124, 796, 1713, 1725
Bst6I CTCTTC 3 cut(s) 68, 1154, 1775
BstACI GRCGYC 1 cut(s) 92
BstAPI GCANNNNNTGC 1 cut(s) 854
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 259
BstDEI CTNAG 8 cut(s) 22, 878, 1284, 1338, 1367, 1380, 1685, 1739
BstDSI CCRYGG 4 cut(s) 169, 585, 1301, 1809
BstFNI CGCG 3 cut(s) 171, 269, 432
BstH2I RGCGCY 1 cut(s) 1736
BstHHI GCGC 1 cut(s) 1735
BstKTI GATC 9 cut(s) 49, 61, 658, 766, 1107, 1320, 1366, 1443, 1525
BstMAI GTCTC 2 cut(s) 864, 1598
BstMBI GATC 9 cut(s) 46, 58, 655, 763, 1104, 1317, 1363, 1440, 1522
BstNI CCWGG 4 cut(s) 124, 796, 1713, 1725
BstSCI CCNGG 8 cut(s) 122, 621, 794, 809, 810, 1061, 1711, 1723
BstSFI CTRYAG 2 cut(s) 368, 628
BstSLI GKGCMC 2 cut(s) 130, 1193
BstUI CGCG 3 cut(s) 171, 269, 432
BstV1I GCAGC 4 cut(s) 121, 354, 593, 1829
BstX2I RGATCY 1 cut(s) 655
BstXI CCANNNNNNTGG 1 cut(s) 1599
BstYI RGATCY 1 cut(s) 655
BsuRI GGCC 8 cut(s) 122, 128, 471, 554, 590, 977, 1061, 1145
BtgI CCRYGG 4 cut(s) 169, 585, 1301, 1809
BtgZI GCGATG 1 cut(s) 1001
BtrI CACGTC 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 773
BtsIMutI CAGTG 5 cut(s) 773, 1160, 1333, 1413, 1513
BveI ACCTGC 3 cut(s) 309, 1073, 1129
Cac8I GCNNGC 1 cut(s) 259
CaiI CAGNNNCTG 1 cut(s) 1846
CfoI GCGC 1 cut(s) 1735
Cfr10I RCCGGY 3 cut(s) 41, 185, 873
Cfr13I GGNCC 4 cut(s) 126, 127, 298, 1829
Cfr42I CCGCGG 1 cut(s) 172
Cfr9I CCCGGG 1 cut(s) 810
CseI GACGC 2 cut(s) 81, 258
Csp6I GTAC 5 cut(s) 176, 316, 610, 709, 1633
CspCI CAANNNNNGTGG 2 cut(s) 448, 483
CviAII CATG 7 cut(s) 586, 1019, 1100, 1234, 1302, 1513, 1810
CviQI GTAC 5 cut(s) 176, 316, 610, 709, 1633
DdeI CTNAG 8 cut(s) 22, 878, 1284, 1338, 1367, 1380, 1685, 1739
DpnI GATC 9 cut(s) 48, 60, 657, 765, 1106, 1319, 1365, 1442, 1524
DpnII GATC 9 cut(s) 46, 58, 655, 763, 1104, 1317, 1363, 1440, 1522
EaeI YGGCCR 3 cut(s) 469, 588, 1143
Eam1104I CTCTTC 3 cut(s) 68, 1154, 1775
EarI CTCTTC 3 cut(s) 68, 1154, 1775
Eco130I CCWWGG 4 cut(s) 585, 1301, 1592, 1809
Eco147I AGGCCT 1 cut(s) 554
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 864
Eco47I GGWCC 2 cut(s) 298, 1829
Eco57I CTGAAG 3 cut(s) 374, 1136, 1490
Eco88I CYCGRG 2 cut(s) 810, 1825
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 4 cut(s) 122, 794, 1711, 1723
EcoT14I CCWWGG 4 cut(s) 585, 1301, 1592, 1809
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 4 cut(s) 585, 1301, 1592, 1809
FaeI CATG 7 cut(s) 589, 1022, 1103, 1237, 1305, 1516, 1813
FalI AAGNNNNNCTT 6 cut(s) 995, 1027, 1190, 1222, 1757, 1789
FaqI GGGAC 5 cut(s) 62, 256, 1255, 1703, 1729
FatI CATG 7 cut(s) 585, 1018, 1099, 1233, 1301, 1512, 1809
FbaI TGATCA 2 cut(s) 1317, 1522
FblI GTMKAC 1 cut(s) 1070
FriOI GRGCYC 1 cut(s) 130
FspBI CTAG 3 cut(s) 254, 326, 498
GlaI GCGC 1 cut(s) 1734
GsuI CTGGAG 1 cut(s) 403
HaeII RGCGCY 1 cut(s) 1736
HaeIII GGCC 8 cut(s) 122, 128, 471, 554, 590, 977, 1061, 1145
HgaI GACGC 2 cut(s) 81, 258
HhaI GCGC 1 cut(s) 1735
Hin1I GRCGYC 1 cut(s) 92
Hin1II CATG 7 cut(s) 589, 1022, 1103, 1237, 1305, 1516, 1813
Hin6I GCGC 1 cut(s) 1733
HinP1I GCGC 1 cut(s) 1733
HphI GGTGA 8 cut(s) 28, 133, 344, 517, 799, 1327, 1630, 1664
Hpy166II GTNNAC 1 cut(s) 1071
Hpy188III TCNNGA 7 cut(s) 326, 420, 749, 824, 1012, 1227, 1832
Hpy8I GTNNAC 1 cut(s) 1071
Hpy99I CGWCG 3 cut(s) 77, 97, 269
HpyCH4IV ACGT 3 cut(s) 72, 178, 264
HpyCH4V TGCA 5 cut(s) 162, 261, 370, 640, 848
HpyF3I CTNAG 8 cut(s) 22, 878, 1284, 1338, 1367, 1380, 1685, 1739
HpySE526I ACGT 3 cut(s) 72, 178, 264
Hsp92I GRCGYC 1 cut(s) 92
Hsp92II CATG 7 cut(s) 589, 1022, 1103, 1237, 1305, 1516, 1813
HspAI GCGC 1 cut(s) 1733
Kpn2I TCCGGA 2 cut(s) 823, 1226
KpnI GGTACC 1 cut(s) 613
Ksp22I TGATCA 2 cut(s) 1317, 1522
KspI CCGCGG 1 cut(s) 172
Kzo9I GATC 9 cut(s) 46, 58, 655, 763, 1104, 1317, 1363, 1440, 1522
LguI GCTCTTC 1 cut(s) 1775
LmnI GCTCC 5 cut(s) 117, 234, 1297, 1376, 1477
Lsp1109I GCAGC 4 cut(s) 121, 354, 593, 1829
LweI GCATC 3 cut(s) 829, 835, 1645
MaeI CTAG 3 cut(s) 254, 326, 498
MaeII ACGT 3 cut(s) 72, 178, 264
MaeIII GTNAC 3 cut(s) 34, 617, 1508
MalI GATC 9 cut(s) 48, 60, 657, 765, 1106, 1319, 1365, 1442, 1524
MbiI CCGCTC 1 cut(s) 465
MboI GATC 9 cut(s) 46, 58, 655, 763, 1104, 1317, 1363, 1440, 1522
MboII GAAGA 8 cut(s) 55, 58, 358, 727, 1015, 1171, 1210, 1762
MflI RGATCY 1 cut(s) 655
MhlI GDGCHC 3 cut(s) 130, 1090, 1193
MlsI TGGCCA 1 cut(s) 590
MluCI AATT 4 cut(s) 691, 837, 1517, 1756
MluNI TGGCCA 1 cut(s) 590
MlyI GAGTC 5 cut(s) 746, 873, 1237, 1685, 1711
MmeI TCCRAC 1 cut(s) 894
Mox20I TGGCCA 1 cut(s) 590
MroI TCCGGA 2 cut(s) 823, 1226
MroXI GAANNNNTTC 2 cut(s) 803, 1007
MscI TGGCCA 1 cut(s) 590
MseI TTAA 2 cut(s) 1035, 1488
MslI CAYNNNNRTG 1 cut(s) 1808
Msp20I TGGCCA 1 cut(s) 590
MspA1I CMGCKG 1 cut(s) 171
MspR9I CCNGG 8 cut(s) 124, 623, 796, 811, 812, 1063, 1713, 1725
MvaI CCWGG 4 cut(s) 124, 796, 1713, 1725
MvnI CGCG 3 cut(s) 171, 269, 432
NciI CCSGG 4 cut(s) 623, 811, 812, 1063
NcoI CCATGG 3 cut(s) 585, 1301, 1809
NdeII GATC 9 cut(s) 46, 58, 655, 763, 1104, 1317, 1363, 1440, 1522
NlaIII CATG 7 cut(s) 589, 1022, 1103, 1237, 1305, 1516, 1813
NmeAIII GCCGAG 2 cut(s) 304, 1171
NmuCI GTSAC 3 cut(s) 34, 617, 1508
PaqCI CACCTGC 2 cut(s) 1073, 1129
PceI AGGCCT 1 cut(s) 554
PciSI GCTCTTC 1 cut(s) 1775
PdmI GAANNNNTTC 2 cut(s) 803, 1007
PfeI GAWTC 8 cut(s) 207, 310, 633, 815, 1465, 1621, 1681, 1792
Pfl23II CGTACG 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 948
PleI GAGTC 5 cut(s) 746, 872, 1237, 1685, 1711
PpsI GAGTC 5 cut(s) 746, 872, 1237, 1685, 1711
Ppu21I YACGTR 1 cut(s) 179
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 4 cut(s) 122, 794, 1711, 1723
PspGI CCWGG 4 cut(s) 122, 794, 1711, 1723
PspLI CGTACG 1 cut(s) 175
PspOMI GGGCCC 1 cut(s) 126
PspPI GGNCC 4 cut(s) 126, 127, 298, 1829
PspPPI RGGWCCY 1 cut(s) 298
PstI CTGCAG 1 cut(s) 372
PstNI CAGNNNCTG 1 cut(s) 1846
PsuI RGATCY 1 cut(s) 655
RsaI GTAC 5 cut(s) 177, 317, 611, 710, 1634
RsaNI GTAC 5 cut(s) 176, 316, 610, 709, 1633
RseI CAYNNNNRTG 1 cut(s) 1808
SacII CCGCGG 1 cut(s) 172
SapI GCTCTTC 1 cut(s) 1775
SaqAI TTAA 2 cut(s) 1035, 1488
Sau3AI GATC 9 cut(s) 46, 58, 655, 763, 1104, 1317, 1363, 1440, 1522
Sau96I GGNCC 4 cut(s) 126, 127, 298, 1829
SchI GAGTC 5 cut(s) 746, 873, 1237, 1685, 1711
ScrFI CCNGG 8 cut(s) 124, 623, 796, 811, 812, 1063, 1713, 1725
SduI GDGCHC 3 cut(s) 130, 1090, 1193
SfaNI GCATC 3 cut(s) 829, 835, 1645
SfcI CTRYAG 2 cut(s) 368, 628
Sfr303I CCGCGG 1 cut(s) 172
SgrAI CRCCGGYG 1 cut(s) 41
SgrBI CCGCGG 1 cut(s) 172
SinI GGWCC 2 cut(s) 298, 1829
SmaI CCCGGG 1 cut(s) 812
SmiMI CAYNNNNRTG 1 cut(s) 1808
SmlI CTYRAG 2 cut(s) 149, 1763
SmoI CTYRAG 2 cut(s) 149, 1763
Sse9I AATT 4 cut(s) 691, 837, 1517, 1756
SseBI AGGCCT 1 cut(s) 554
SspMI CTAG 3 cut(s) 254, 326, 498
StuI AGGCCT 1 cut(s) 554
StyD4I CCNGG 8 cut(s) 122, 621, 794, 809, 810, 1061, 1711, 1723
StyI CCWWGG 4 cut(s) 585, 1301, 1592, 1809
TaiI ACGT 3 cut(s) 75, 181, 267
TaqI TCGA 3 cut(s) 57, 766, 1694
TasI AATT 4 cut(s) 691, 837, 1517, 1756
TatI WGTACW 2 cut(s) 708, 1632
TauI GCSGC 8 cut(s) 174, 221, 407, 435, 438, 441, 731, 1082
TfiI GAWTC 8 cut(s) 207, 310, 633, 815, 1465, 1621, 1681, 1792
Tru1I TTAA 2 cut(s) 1035, 1488
Tru9I TTAA 2 cut(s) 1035, 1488
TscAI CASTG 5 cut(s) 780, 1160, 1333, 1420, 1513
TseFI GTSAC 3 cut(s) 34, 617, 1508
TseI GCWGC 4 cut(s) 109, 367, 581, 1817
Tsp45I GTSAC 3 cut(s) 34, 617, 1508
TspDTI ATGAA 4 cut(s) 846, 1004, 1211, 1250
TspMI CCCGGG 1 cut(s) 810
TspRI CASTG 5 cut(s) 780, 1160, 1333, 1420, 1513
Van91I CCANNNNNTGG 1 cut(s) 948
VpaK11BI GGWCC 2 cut(s) 298, 1829
XapI RAATTY 3 cut(s) 691, 1517, 1756
XbaI TCTAGA 1 cut(s) 325
XmaI CCCGGG 1 cut(s) 810
XmiI GTMKAC 1 cut(s) 1070
XmnI GAANNNNTTC 2 cut(s) 803, 1007
XspI CTAG 3 cut(s) 254, 326, 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.