Domain of unknown function (DUF2828)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| polyprenyl_synt | PF00348 | 43 - 209 | 1.3e-28 | Polyprenyl synthetase |
| DUF2828 | PF11443 | 213 - 449 | 1.5e-46 | Domain of unknown function (DUF2828) |
| DUF2828 | PF11443 | 456 - 683 | 1.1e-82 | Domain of unknown function (DUF2828) |
| DUF7788 | PF25043 | 685 - 879 | 5.6e-83 | Domain of unknown function (DUF7788) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 251, 789 |
| AccB1I | GGYRCC | 3 cut(s) | 691, 797, 1590 |
| AccI | GTMKAC | 2 cut(s) | 1023, 2543 |
| AccII | CGCG | 4 cut(s) | 194, 321, 395, 1663 |
| AccIII | TCCGGA | 1 cut(s) | 2078 |
| AclWI | GGATC | 6 cut(s) | 121, 253, 271, 995, 1080, 2223 |
| AcoI | YGGCCR | 5 cut(s) | 369, 1440, 1932, 2629, 2639 |
| AcsI | RAATTY | 3 cut(s) | 1314, 1804, 2634 |
| AcuI | CTGAAG | 2 cut(s) | 1988, 2367 |
| AcvI | CACGTG | 1 cut(s) | 688 |
| AcyI | GRCGYC | 1 cut(s) | 96 |
| AdeI | CACNNNGTG | 1 cut(s) | 691 |
| AfaI | GTAC | 6 cut(s) | 146, 551, 560, 792, 1673, 2492 |
| AfeI | AGCGCT | 1 cut(s) | 995 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 84, 454, 523, 900, 1272, 2159, 2442, 2443, 2653 |
| AflIII | ACRYGT | 1 cut(s) | 2073 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2539 |
| AjiI | CACGTC | 3 cut(s) | 294, 538, 2074 |
| AjnI | CCWGG | 5 cut(s) | 552, 1442, 1457, 1646, 2028 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1283, 1315 |
| Alw21I | GWGCWC | 3 cut(s) | 207, 405, 1942 |
| Alw26I | GTCTC | 4 cut(s) | 1191, 1716, 2441, 2552 |
| AlwI | GGATC | 6 cut(s) | 121, 253, 271, 995, 1080, 2223 |
| Ama87I | CYCGRG | 1 cut(s) | 1148 |
| Aor13HI | TCCGGA | 1 cut(s) | 2078 |
| Aor51HI | AGCGCT | 1 cut(s) | 995 |
| ApeKI | GCWGC | 3 cut(s) | 833, 1187, 1580 |
| ApoI | RAATTY | 3 cut(s) | 1314, 1804, 2634 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1595, 1627, 2354, 2386 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1655 |
| AspLEI | GCGC | 3 cut(s) | 248, 996, 2578 |
| AspS9I | GGNCC | 7 cut(s) | 87, 172, 741, 1010, 1061, 2026, 2644 |
| AsuC2I | CCSGG | 5 cut(s) | 28, 86, 469, 1014, 1676 |
| AsuHPI | GGTGA | 5 cut(s) | 220, 643, 2179, 2473, 2593 |
| AvaI | CYCGRG | 1 cut(s) | 1148 |
| AvaII | GGWCC | 6 cut(s) | 172, 741, 1010, 1061, 2026, 2644 |
| BaeGI | GKGCMC | 1 cut(s) | 1595 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 533, 566 |
| BalI | TGGCCA | 2 cut(s) | 1442, 2631 |
| BanI | GGYRCC | 3 cut(s) | 691, 797, 1590 |
| BanII | GRGCYC | 2 cut(s) | 207, 2436 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1289, 1321 |
| BauI | CACGAG | 1 cut(s) | 1493 |
| BbrPI | CACGTG | 1 cut(s) | 688 |
| BbsI | GAAGAC | 2 cut(s) | 360, 968 |
| Bbv12I | GWGCWC | 3 cut(s) | 207, 405, 1942 |
| BbvCI | CCTCAGC | 3 cut(s) | 1100, 1730, 2048 |
| BbvI | GCAGC | 3 cut(s) | 845, 1199, 1592 |
| BccI | CCATC | 5 cut(s) | 86, 1970, 1976, 2242, 2621 |
| BceAI | ACGGC | 7 cut(s) | 83, 347, 437, 737, 1109, 1250, 1735 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 341, 375, 1625, 1659 |
| BciT130I | CCWGG | 5 cut(s) | 554, 1444, 1459, 1648, 2030 |
| BciVI | GTATCC | 1 cut(s) | 505 |
| BclI | TGATCA | 1 cut(s) | 2169 |
| BcnI | CCSGG | 5 cut(s) | 28, 86, 469, 1014, 1676 |
| BcoDI | GTCTC | 4 cut(s) | 1191, 1716, 2441, 2552 |
| BfmI | CTRYAG | 1 cut(s) | 579 |
| BfoI | RGCGCY | 2 cut(s) | 997, 2579 |
| BfuAI | ACCTGC | 2 cut(s) | 251, 789 |
| BfuI | GTATCC | 1 cut(s) | 505 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 368, 1835 |
| BglII | AGATCT | 2 cut(s) | 913, 1529 |
| BisI | GCNGC | 7 cut(s) | 195, 319, 834, 894, 1188, 1581, 1932 |
| BlpI | GCTNAGC | 1 cut(s) | 1998 |
| BlsI | GCNGC | 7 cut(s) | 196, 320, 835, 895, 1189, 1582, 1933 |
| Bme18I | GGWCC | 6 cut(s) | 172, 741, 1010, 1061, 2026, 2644 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2539 |
| BmeT110I | CYCGRG | 1 cut(s) | 1148 |
| BmgBI | CACGTC | 3 cut(s) | 294, 538, 2074 |
| BmgT120I | GGNCC | 7 cut(s) | 87, 172, 741, 1010, 1061, 2026, 2644 |
| BmiI | GGNNCC | 6 cut(s) | 173, 693, 799, 1011, 1062, 1592 |
| BmrI | ACTGGG | 2 cut(s) | 30, 2263 |
| BmsI | GCATC | 7 cut(s) | 129, 435, 739, 1221, 1243, 2488, 2695 |
| BmuI | ACTGGG | 2 cut(s) | 30, 2263 |
| BpiI | GAAGAC | 2 cut(s) | 360, 968 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 371, 403, 1271, 1303 |
| BpmI | CTGGAG | 1 cut(s) | 575 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1100, 1730, 2048 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1998 |
| BpuEI | CTTGAG | 4 cut(s) | 749, 1546, 1712, 2591 |
| BpuMI | CCSGG | 5 cut(s) | 28, 86, 469, 1014, 1676 |
| BsaAI | YACGTR | 2 cut(s) | 688, 794 |
| BsaBI | GATNNNNATC | 1 cut(s) | 125 |
| BsaHI | GRCGYC | 1 cut(s) | 96 |
| BsaI | GGTCTC | 2 cut(s) | 1716, 2441 |
| BsaJI | CCNNGG | 6 cut(s) | 319, 453, 522, 1266, 1347, 2153 |
| BsaWI | WCCGGW | 2 cut(s) | 800, 2078 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1977, 2007, 2474, 2504 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 84, 454, 523, 900, 1272, 2159, 2442, 2443, 2653 |
| Bse118I | RCCGGY | 6 cut(s) | 235, 371, 1066, 1725, 1934, 2548 |
| Bse1I | ACTGG | 2 cut(s) | 36, 2258 |
| Bse3DI | GCAATG | 2 cut(s) | 1641, 1845 |
| Bse8I | GATNNNNATC | 1 cut(s) | 125 |
| BseAI | TCCGGA | 1 cut(s) | 2078 |
| BseBI | CCWGG | 5 cut(s) | 554, 1444, 1459, 1648, 2030 |
| BseDI | CCNNGG | 6 cut(s) | 319, 453, 522, 1266, 1347, 2153 |
| BseGI | GGATG | 6 cut(s) | 1075, 1327, 1987, 2253, 2265, 2503 |
| BseJI | GATNNNNATC | 1 cut(s) | 125 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 84, 454, 523, 900, 1272, 2159, 2442, 2443, 2653 |
| BseMI | GCAATG | 2 cut(s) | 1641, 1845 |
| BseMII | CTCAG | 8 cut(s) | 210, 1091, 1359, 1721, 1989, 2039, 2204, 2519 |
| BseNI | ACTGG | 2 cut(s) | 36, 2258 |
| BseRI | GAGGAG | 3 cut(s) | 1597, 1709, 1771 |
| BseSI | GKGCMC | 1 cut(s) | 1595 |
| BseX3I | CGGCCG | 2 cut(s) | 1932, 2639 |
| BseXI | GCAGC | 3 cut(s) | 845, 1199, 1592 |
| BseYI | CCCAGC | 1 cut(s) | 2442 |
| BsgI | GTGCAG | 1 cut(s) | 618 |
| Bsh1236I | CGCG | 4 cut(s) | 194, 321, 395, 1663 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1935, 2642 |
| BshNI | GGYRCC | 3 cut(s) | 691, 797, 1590 |
| BsiEI | CGRYCG | 2 cut(s) | 1935, 2642 |
| BsiHKAI | GWGCWC | 3 cut(s) | 207, 405, 1942 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1148 |
| BslFI | GGGAC | 5 cut(s) | 555, 1023, 1701, 2107, 2546 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 84, 454, 523, 900, 1272, 2159, 2442, 2443, 2653 |
| BsmAI | GTCTC | 4 cut(s) | 1191, 1716, 2441, 2552 |
| BsmBI | CGTCTC | 1 cut(s) | 1191 |
| BsmFI | GGGAC | 5 cut(s) | 555, 1023, 1701, 2107, 2546 |
| BsmI | GAATGC | 2 cut(s) | 1267, 1547 |
| Bso31I | GGTCTC | 2 cut(s) | 1716, 2441 |
| BsoBI | CYCGRG | 1 cut(s) | 1148 |
| Bsp1286I | GDGCHC | 5 cut(s) | 207, 405, 1595, 1942, 2436 |
| Bsp13I | TCCGGA | 1 cut(s) | 2078 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1998 |
| Bsp19I | CCATGG | 2 cut(s) | 1347, 2153 |
| BspCNI | CTCAG | 8 cut(s) | 211, 1092, 1360, 1722, 1990, 2040, 2203, 2520 |
| BspEI | TCCGGA | 1 cut(s) | 2078 |
| BspFNI | CGCG | 4 cut(s) | 194, 321, 395, 1663 |
| BspHI | TCATGA | 1 cut(s) | 589 |
| BspLI | GGNNCC | 6 cut(s) | 173, 693, 799, 1011, 1062, 1592 |
| BspMI | ACCTGC | 2 cut(s) | 251, 789 |
| BspPI | GGATC | 6 cut(s) | 121, 253, 271, 995, 1080, 2223 |
| BspQI | GCTCTTC | 3 cut(s) | 453, 591, 2142 |
| BspT107I | GGYRCC | 3 cut(s) | 691, 797, 1590 |
| BspTNI | GGTCTC | 2 cut(s) | 1716, 2441 |
| BsrDI | GCAATG | 2 cut(s) | 1641, 1845 |
| BsrFI | RCCGGY | 6 cut(s) | 235, 371, 1066, 1725, 1934, 2548 |
| BsrI | ACTGG | 2 cut(s) | 36, 2258 |
| BssAI | RCCGGY | 6 cut(s) | 235, 371, 1066, 1725, 1934, 2548 |
| BssECI | CCNNGG | 6 cut(s) | 319, 453, 522, 1266, 1347, 2153 |
| BssNI | GRCGYC | 1 cut(s) | 96 |
| BssSI | CACGAG | 1 cut(s) | 1493 |
| BssT1I | CCWWGG | 2 cut(s) | 1347, 2153 |
| Bst2BI | CACGAG | 1 cut(s) | 1493 |
| Bst2UI | CCWGG | 5 cut(s) | 554, 1444, 1459, 1648, 2030 |
| Bst4CI | ACNGT | 3 cut(s) | 421, 580, 1877 |
| Bst6I | CTCTTC | 6 cut(s) | 12, 453, 591, 969, 2006, 2142 |
| BstACI | GRCGYC | 1 cut(s) | 96 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 666, 1706 |
| BstBAI | YACGTR | 2 cut(s) | 688, 794 |
| BstC8I | GCNNGC | 9 cut(s) | 156, 199, 203, 237, 373, 465, 1068, 2045, 2087 |
| BstDSI | CCRYGG | 5 cut(s) | 319, 453, 1266, 1347, 2153 |
| BstF5I | GGATG | 6 cut(s) | 1075, 1327, 1987, 2253, 2265, 2503 |
| BstFNI | CGCG | 4 cut(s) | 194, 321, 395, 1663 |
| BstH2I | RGCGCY | 2 cut(s) | 997, 2579 |
| BstHHI | GCGC | 3 cut(s) | 248, 996, 2578 |
| BstMAI | GTCTC | 4 cut(s) | 1191, 1716, 2441, 2552 |
| BstMCI | CGRYCG | 2 cut(s) | 1935, 2642 |
| BstNI | CCWGG | 5 cut(s) | 554, 1444, 1459, 1648, 2030 |
| BstNSI | RCATGY | 1 cut(s) | 2089 |
| BstSFI | CTRYAG | 1 cut(s) | 579 |
| BstSLI | GKGCMC | 1 cut(s) | 1595 |
| BstUI | CGCG | 4 cut(s) | 194, 321, 395, 1663 |
| BstV1I | GCAGC | 3 cut(s) | 845, 1199, 1592 |
| BstV2I | GAAGAC | 2 cut(s) | 360, 968 |
| BstX2I | RGATCY | 3 cut(s) | 913, 1529, 2215 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1450 |
| BstYI | RGATCY | 3 cut(s) | 913, 1529, 2215 |
| BstZI | CGGCCG | 2 cut(s) | 1932, 2639 |
| BsuI | GTATCC | 1 cut(s) | 505 |
| BtgI | CCRYGG | 5 cut(s) | 319, 453, 1266, 1347, 2153 |
| BtgZI | GCGATG | 2 cut(s) | 152, 1105 |
| BtrI | CACGTC | 3 cut(s) | 294, 538, 2074 |
| BtsCI | GGATG | 6 cut(s) | 1075, 1327, 1987, 2253, 2265, 2503 |
| BtsI | GCAGTG | 1 cut(s) | 2508 |
| BtsIMutI | CAGTG | 3 cut(s) | 2012, 2265, 2508 |
| BveI | ACCTGC | 2 cut(s) | 251, 789 |
| Cac8I | GCNNGC | 9 cut(s) | 156, 199, 203, 237, 373, 465, 1068, 2045, 2087 |
| CciI | TCATGA | 1 cut(s) | 589 |
| CfoI | GCGC | 3 cut(s) | 248, 996, 2578 |
| Cfr10I | RCCGGY | 6 cut(s) | 235, 371, 1066, 1725, 1934, 2548 |
| Cfr13I | GGNCC | 7 cut(s) | 87, 172, 741, 1010, 1061, 2026, 2644 |
| Cfr42I | CCGCGG | 1 cut(s) | 322 |
| CseI | GACGC | 2 cut(s) | 104, 873 |
| CsiI | ACCWGGT | 1 cut(s) | 2028 |
| Csp6I | GTAC | 6 cut(s) | 145, 550, 559, 791, 1672, 2491 |
| CviQI | GTAC | 6 cut(s) | 145, 550, 559, 791, 1672, 2491 |
| DraIII | CACNNNGTG | 1 cut(s) | 691 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2539 |
| EaeI | YGGCCR | 5 cut(s) | 369, 1440, 1932, 2629, 2639 |
| EagI | CGGCCG | 2 cut(s) | 1932, 2639 |
| Eam1104I | CTCTTC | 6 cut(s) | 12, 453, 591, 969, 2006, 2142 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2539 |
| EarI | CTCTTC | 6 cut(s) | 12, 453, 591, 969, 2006, 2142 |
| EciI | GGCGGA | 5 cut(s) | 305, 1053, 1085, 1370, 1916 |
| Ecl136II | GAGCTC | 1 cut(s) | 205 |
| EclXI | CGGCCG | 2 cut(s) | 1932, 2639 |
| Eco130I | CCWWGG | 2 cut(s) | 1347, 2153 |
| Eco24I | GRGCYC | 2 cut(s) | 207, 2436 |
| Eco31I | GGTCTC | 2 cut(s) | 1716, 2441 |
| Eco47I | GGWCC | 6 cut(s) | 172, 741, 1010, 1061, 2026, 2644 |
| Eco47III | AGCGCT | 1 cut(s) | 995 |
| Eco52I | CGGCCG | 2 cut(s) | 1932, 2639 |
| Eco53kI | GAGCTC | 1 cut(s) | 205 |
| Eco57I | CTGAAG | 2 cut(s) | 1988, 2367 |
| Eco72I | CACGTG | 1 cut(s) | 688 |
| Eco88I | CYCGRG | 1 cut(s) | 1148 |
| EcoICRI | GAGCTC | 1 cut(s) | 205 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2026 |
| EcoRI | GAATTC | 1 cut(s) | 1804 |
| EcoRII | CCWGG | 5 cut(s) | 552, 1442, 1457, 1646, 2028 |
| EcoT14I | CCWWGG | 2 cut(s) | 1347, 2153 |
| EcoT22I | ATGCAT | 1 cut(s) | 1236 |
| EcoT38I | GRGCYC | 2 cut(s) | 207, 2436 |
| ErhI | CCWWGG | 2 cut(s) | 1347, 2153 |
| Esp3I | CGTCTC | 1 cut(s) | 1191 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2600, 2632 |
| FaqI | GGGAC | 5 cut(s) | 555, 1023, 1701, 2107, 2546 |
| FauI | CCCGC | 3 cut(s) | 314, 490, 1668 |
| FbaI | TGATCA | 1 cut(s) | 2169 |
| FblI | GTMKAC | 2 cut(s) | 1023, 2543 |
| Fnu4HI | GCNGC | 7 cut(s) | 195, 319, 834, 894, 1188, 1581, 1932 |
| FokI | GGATG | 6 cut(s) | 1062, 1334, 1994, 2260, 2272, 2510 |
| FriOI | GRGCYC | 2 cut(s) | 207, 2436 |
| Fsp4HI | GCNGC | 7 cut(s) | 195, 319, 834, 894, 1188, 1581, 1932 |
| GlaI | GCGC | 3 cut(s) | 247, 995, 2577 |
| GluI | GCNGC | 7 cut(s) | 195, 319, 834, 894, 1188, 1581, 1932 |
| GsaI | CCCAGC | 1 cut(s) | 2446 |
| GsuI | CTGGAG | 1 cut(s) | 575 |
| HaeII | RGCGCY | 2 cut(s) | 997, 2579 |
| HgaI | GACGC | 2 cut(s) | 104, 873 |
| HhaI | GCGC | 3 cut(s) | 248, 996, 2578 |
| Hin1I | GRCGYC | 1 cut(s) | 96 |
| Hin6I | GCGC | 3 cut(s) | 246, 994, 2576 |
| HinP1I | GCGC | 3 cut(s) | 246, 994, 2576 |
| HincII | GTYRAC | 1 cut(s) | 334 |
| HindII | GTYRAC | 1 cut(s) | 334 |
| HindIII | AAGCTT | 1 cut(s) | 1043 |
| HphI | GGTGA | 5 cut(s) | 220, 643, 2179, 2473, 2593 |
| Hpy166II | GTNNAC | 5 cut(s) | 334, 417, 791, 1024, 2544 |
| Hpy188III | TCNNGA | 8 cut(s) | 253, 438, 590, 941, 958, 1150, 1493, 2079 |
| Hpy8I | GTNNAC | 5 cut(s) | 334, 417, 791, 1024, 2544 |
| Hpy99I | CGWCG | 6 cut(s) | 287, 311, 380, 425, 539, 889 |
| HpyCH4III | ACNGT | 3 cut(s) | 421, 580, 1877 |
| HpyCH4IV | ACGT | 6 cut(s) | 293, 357, 537, 687, 793, 2073 |
| HpyCH4V | TGCA | 8 cut(s) | 297, 599, 625, 777, 1234, 2089, 2197, 2501 |
| HpySE526I | ACGT | 6 cut(s) | 293, 357, 537, 687, 793, 2073 |
| Hsp92I | GRCGYC | 1 cut(s) | 96 |
| HspAI | GCGC | 3 cut(s) | 246, 994, 2576 |
| Kpn2I | TCCGGA | 1 cut(s) | 2078 |
| KroI | GCCGGC | 3 cut(s) | 235, 371, 1066 |
| KroNI | GCCGGC | 3 cut(s) | 237, 373, 1068 |
| Ksp22I | TGATCA | 1 cut(s) | 2169 |
| KspI | CCGCGG | 1 cut(s) | 322 |
| LguI | GCTCTTC | 3 cut(s) | 453, 591, 2142 |
| LmnI | GCTCC | 5 cut(s) | 7, 732, 2035, 2228, 2329 |
| Lsp1109I | GCAGC | 3 cut(s) | 845, 1199, 1592 |
| LweI | GCATC | 7 cut(s) | 129, 435, 739, 1221, 1243, 2488, 2695 |
| MabI | ACCWGGT | 1 cut(s) | 2028 |
| MaeII | ACGT | 6 cut(s) | 293, 357, 537, 687, 793, 2073 |
| MaeIII | GTNAC | 7 cut(s) | 226, 754, 809, 1035, 2069, 2239, 2551 |
| MflI | RGATCY | 3 cut(s) | 913, 1529, 2215 |
| MhlI | GDGCHC | 5 cut(s) | 207, 405, 1595, 1942, 2436 |
| MlsI | TGGCCA | 2 cut(s) | 1442, 2631 |
| MluNI | TGGCCA | 2 cut(s) | 1442, 2631 |
| MlyI | GAGTC | 6 cut(s) | 230, 1280, 1466, 1598, 2089, 2528 |
| MmeI | TCCRAC | 5 cut(s) | 199, 462, 558, 768, 2115 |
| Mox20I | TGGCCA | 2 cut(s) | 1442, 2631 |
| Mph1103I | ATGCAT | 1 cut(s) | 1236 |
| MreI | CGCCGGCG | 1 cut(s) | 1066 |
| MroI | TCCGGA | 1 cut(s) | 2078 |
| MroNI | GCCGGC | 3 cut(s) | 235, 371, 1066 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1655 |
| MscI | TGGCCA | 2 cut(s) | 1442, 2631 |
| MseI | TTAA | 4 cut(s) | 1031, 1055, 1092, 2704 |
| MslI | CAYNNNNRTG | 1 cut(s) | 594 |
| Msp20I | TGGCCA | 2 cut(s) | 1442, 2631 |
| MspA1I | CMGCKG | 2 cut(s) | 321, 1190 |
| Mva1269I | GAATGC | 2 cut(s) | 1267, 1547 |
| MvaI | CCWGG | 5 cut(s) | 554, 1444, 1459, 1648, 2030 |
| MvnI | CGCG | 4 cut(s) | 194, 321, 395, 1663 |
| NaeI | GCCGGC | 3 cut(s) | 237, 373, 1068 |
| NciI | CCSGG | 5 cut(s) | 28, 86, 469, 1014, 1676 |
| NcoI | CCATGG | 2 cut(s) | 1347, 2153 |
| NgoMIV | GCCGGC | 3 cut(s) | 235, 371, 1066 |
| NlaIV | GGNNCC | 6 cut(s) | 173, 693, 799, 1011, 1062, 1592 |
| NmeAIII | GCCGAG | 1 cut(s) | 1543 |
| NmuCI | GTSAC | 5 cut(s) | 226, 809, 1035, 2069, 2239 |
| NsiI | ATGCAT | 1 cut(s) | 1236 |
| NspI | RCATGY | 1 cut(s) | 2089 |
| PaeI | GCATGC | 1 cut(s) | 2089 |
| PaeR7I | CTCGAG | 1 cut(s) | 1148 |
| PagI | TCATGA | 1 cut(s) | 589 |
| PciSI | GCTCTTC | 3 cut(s) | 453, 591, 2142 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 198, 354, 450, 615 |
| PctI | GAATGC | 2 cut(s) | 1267, 1547 |
| PdiI | GCCGGC | 3 cut(s) | 237, 373, 1068 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1655 |
| PfeI | GAWTC | 9 cut(s) | 23, 74, 441, 925, 1428, 2203, 2293, 2524, 2599 |
| PfoI | TCCNGGA | 1 cut(s) | 26 |
| PkrI | GCNGC | 7 cut(s) | 196, 320, 835, 895, 1189, 1582, 1933 |
| PleI | GAGTC | 6 cut(s) | 229, 1280, 1466, 1598, 2089, 2528 |
| PmaCI | CACGTG | 1 cut(s) | 688 |
| PmlI | CACGTG | 1 cut(s) | 688 |
| PpsI | GAGTC | 6 cut(s) | 229, 1280, 1466, 1598, 2089, 2528 |
| Ppu21I | YACGTR | 2 cut(s) | 688, 794 |
| PpuMI | RGGWCCY | 1 cut(s) | 2026 |
| Psp124BI | GAGCTC | 1 cut(s) | 207 |
| Psp5II | RGGWCCY | 1 cut(s) | 2026 |
| Psp6I | CCWGG | 5 cut(s) | 552, 1442, 1457, 1646, 2028 |
| PspCI | CACGTG | 1 cut(s) | 688 |
| PspFI | CCCAGC | 1 cut(s) | 2442 |
| PspGI | CCWGG | 5 cut(s) | 552, 1442, 1457, 1646, 2028 |
| PspN4I | GGNNCC | 6 cut(s) | 173, 693, 799, 1011, 1062, 1592 |
| PspPI | GGNCC | 7 cut(s) | 87, 172, 741, 1010, 1061, 2026, 2644 |
| PspPPI | RGGWCCY | 1 cut(s) | 2026 |
| PsuI | RGATCY | 3 cut(s) | 913, 1529, 2215 |
| RsaI | GTAC | 6 cut(s) | 146, 551, 560, 792, 1673, 2492 |
| RsaNI | GTAC | 6 cut(s) | 145, 550, 559, 791, 1672, 2491 |
| RseI | CAYNNNNRTG | 1 cut(s) | 594 |
| SacI | GAGCTC | 1 cut(s) | 207 |
| SacII | CCGCGG | 1 cut(s) | 322 |
| SapI | GCTCTTC | 3 cut(s) | 453, 591, 2142 |
| SaqAI | TTAA | 4 cut(s) | 1031, 1055, 1092, 2704 |
| SatI | GCNGC | 7 cut(s) | 195, 319, 834, 894, 1188, 1581, 1932 |
| Sau96I | GGNCC | 7 cut(s) | 87, 172, 741, 1010, 1061, 2026, 2644 |
| SchI | GAGTC | 6 cut(s) | 230, 1280, 1466, 1598, 2089, 2528 |
| SduI | GDGCHC | 5 cut(s) | 207, 405, 1595, 1942, 2436 |
| SexAI | ACCWGGT | 1 cut(s) | 2028 |
| SfaNI | GCATC | 7 cut(s) | 129, 435, 739, 1221, 1243, 2488, 2695 |
| SfcI | CTRYAG | 1 cut(s) | 579 |
| Sfr274I | CTCGAG | 1 cut(s) | 1148 |
| Sfr303I | CCGCGG | 1 cut(s) | 322 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1066 |
| SgrBI | CCGCGG | 1 cut(s) | 322 |
| SinI | GGWCC | 6 cut(s) | 172, 741, 1010, 1061, 2026, 2644 |
| SlaI | CTCGAG | 1 cut(s) | 1148 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 594 |
| SmlI | CTYRAG | 5 cut(s) | 764, 1148, 1525, 1691, 2606 |
| SmoI | CTYRAG | 5 cut(s) | 764, 1148, 1525, 1691, 2606 |
| SphI | GCATGC | 1 cut(s) | 2089 |
| SspI | AATATT | 2 cut(s) | 713, 1895 |
| SstI | GAGCTC | 1 cut(s) | 207 |
| StyI | CCWWGG | 2 cut(s) | 1347, 2153 |
| TaaI | ACNGT | 3 cut(s) | 421, 580, 1877 |
| TaiI | ACGT | 6 cut(s) | 296, 360, 540, 690, 796, 2076 |
| TaqI | TCGA | 5 cut(s) | 399, 429, 1149, 1602, 1614 |
| TaqII | GACCGA | 1 cut(s) | 2465 |
| TatI | WGTACW | 1 cut(s) | 558 |
| TauI | GCSGC | 4 cut(s) | 197, 321, 896, 1934 |
| TfiI | GAWTC | 9 cut(s) | 23, 74, 441, 925, 1428, 2203, 2293, 2524, 2599 |
| Tru1I | TTAA | 4 cut(s) | 1031, 1055, 1092, 2704 |
| Tru9I | TTAA | 4 cut(s) | 1031, 1055, 1092, 2704 |
| TscAI | CASTG | 3 cut(s) | 2012, 2272, 2508 |
| TseFI | GTSAC | 5 cut(s) | 226, 809, 1035, 2069, 2239 |
| TseI | GCWGC | 3 cut(s) | 833, 1187, 1580 |
| Tsp45I | GTSAC | 5 cut(s) | 226, 809, 1035, 2069, 2239 |
| TspDTI | ATGAA | 8 cut(s) | 17, 578, 606, 1230, 1437, 1852, 1856, 2276 |
| TspGWI | ACGGA | 3 cut(s) | 214, 1376, 2570 |
| TspRI | CASTG | 3 cut(s) | 2012, 2272, 2508 |
| VpaK11BI | GGWCC | 6 cut(s) | 172, 741, 1010, 1061, 2026, 2644 |
| XapI | RAATTY | 3 cut(s) | 1314, 1804, 2634 |
| XbaI | TCTAGA | 2 cut(s) | 437, 940 |
| XceI | RCATGY | 1 cut(s) | 2089 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1264 |
| XhoI | CTCGAG | 1 cut(s) | 1148 |
| XmiI | GTMKAC | 2 cut(s) | 1023, 2543 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1655 |
| Zsp2I | ATGCAT | 1 cut(s) | 1236 |