Rorug07G0086200

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000255
Physical Location & Seq
Forward (+)
6770753 .. 6774226
3474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0086200.1

Sequence Viewer

Length: 1134 bp
ATGGCAGATTCCGAGGACATTCAGCCTCTTGTCTGTGATAATGGTACTGGAATGGTTAAGGCTGGATTTGCTGGAGATGATGCCCCAAGGGCTGTCTTCCCCAGTATTGTTGGTCGACCTAGGCACACAGGTGTTATGGTGGGGATGGGACAGAAAGACGCATATGTTGGGGATGAGGCTCAGTCCAAAAGAGGTATTCTCACTTTAAAATACCCTATTGAACATGGGATTGTTAGCAATTGGGACGACATGGAAAAGATCTGGCATCATACTTTCTACAATGAGCTTCGTGTGGCTCCTGAAGAACATCCTGTGCTCCTTACTGAGGCACCCCTCAATCCTAAAGCCAACAGAGAGAAGATGACACAGATCATGTTTGAGACCTTCAATTCCCCTGCTATGTATGTTGCCATTCAAGCAGTTCTCTCCCTCTATGCCAGTGGGCGTACAACAGGTATTGTGCTCGACTCTGGTGATGGAGTCAGTCACACAGTTCCCATCTACGAAGGTTATGCACTTCCACATGCCATTCTGCGGCTTGACCTTGCTGGACGAGATTTAACAGACTCCTTAATGAAGATCCTGACTGAGAGAGGGTATTCTTTTACTACAACTGCTGAACGGGAAATTGTACGTGACATTAAAGAGAAGCTTGCATATGTGGCACTTGATTATGAACAAGAACTTGAGACTGCTGCAAGCAGCTCCACAATTGAGAAGAACTATGAACTACCTGATGGTCAGGTAATTACCATTGGAGCAGAGCGTTTCCGTTGCCCTGAAGTCCTATTTCAACCATCACTAGTTGGAATGGAGGCAGCTGGAATTCACGAGACCACCTATAACTCGATTATGAAGTGTGATGTTGACATCAGGAAAGACTTGTATGGTAATATTGTGCTCAGTGGTGGGTCTACTATGTTCCCAGGAATCGCTGATAGGATGAGCAAGGAGATAACAGCCCTTGCACCAAGCAGTATGAAGATCAAGGTGGTGGCACCTCCTGAGAGAAAGTACAGTGTTTGGATCGGAGGATCCATATTGGCTTCACTAAGTACATTCCAGCAGATGTGGATATCTAAGGCAGAGTACGATGAATCCGGCCCATCCATCGTCCACAGAAAATGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

377

Amino Acids

41.62

Weight (kDa)

5.23

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Actin PF00022 5 - 377 7.3e-147 Actin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 328, 997
AccI GTMKAC 2 cut(s) 115, 914
AciI CCGC 1 cut(s) 535
AclWI GGATC 4 cut(s) 574, 1029, 1034, 1042
AcsI RAATTY 1 cut(s) 825
AcuI CTGAAG 2 cut(s) 321, 801
AfaI GTAC 6 cut(s) 46, 448, 633, 1016, 1057, 1091
AfiI CCNNNNNNNGG 2 cut(s) 325, 534
AgsI TTSAA 4 cut(s) 221, 388, 416, 794
AhlI ACTAGT 1 cut(s) 802
AjnI CCWGG 1 cut(s) 925
AleI CACNNNNGTG 1 cut(s) 129
AluBI AGCT 4 cut(s) 286, 652, 705, 821
AluI AGCT 4 cut(s) 286, 652, 705, 821
Alw21I GWGCWC 3 cut(s) 318, 465, 903
Alw26I GTCTC 3 cut(s) 374, 683, 827
AlwI GGATC 4 cut(s) 574, 1029, 1034, 1042
AoxI GGCC 1 cut(s) 1102
ApeKI GCWGC 3 cut(s) 695, 702, 818
ApoI RAATTY 1 cut(s) 825
AspA2I CCTAGG 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 1103
AsuHPI GGTGA 1 cut(s) 485
AvrII CCTAGG 1 cut(s) 119
BamHI GGATCC 1 cut(s) 1034
BanI GGYRCC 2 cut(s) 328, 997
BauI CACGAG 1 cut(s) 830
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 3 cut(s) 318, 465, 903
BbvI GCAGC 3 cut(s) 682, 714, 830
BccI CCATC 7 cut(s) 139, 470, 506, 731, 805, 1114, 1118
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BciT130I CCWGG 1 cut(s) 927
BcoDI GTCTC 3 cut(s) 374, 683, 827
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 3 cut(s) 120, 803, 1132
BglI GCCNNNNNGGC 1 cut(s) 89
BglII AGATCT 1 cut(s) 258
BisI GCNGC 4 cut(s) 536, 696, 703, 819
BlnI CCTAGG 1 cut(s) 119
BlsI GCNGC 4 cut(s) 537, 697, 704, 820
Bme1390I CCNGG 1 cut(s) 927
BmgT120I GGNCC 1 cut(s) 1103
BmiI GGNNCC 4 cut(s) 297, 330, 999, 1036
BmrFI CCNGG 1 cut(s) 927
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 2 cut(s) 70, 274
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 88
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BpmI CTGGAG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 707
BsaAI YACGTR 1 cut(s) 635
BsaI GGTCTC 2 cut(s) 374, 827
BsaJI CCNNGG 4 cut(s) 12, 86, 119, 925
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 534
Bse1I ACTGG 3 cut(s) 52, 102, 438
BseBI CCWGG 1 cut(s) 927
BseDI CCNNGG 4 cut(s) 12, 86, 119, 925
BseGI GGATG 5 cut(s) 150, 178, 307, 948, 1106
BseLI CCNNNNNNNGG 2 cut(s) 325, 534
BseMII CTCAG 5 cut(s) 194, 315, 579, 916, 996
BseNI ACTGG 3 cut(s) 52, 102, 438
BseXI GCAGC 3 cut(s) 682, 714, 830
BshFI GGCC 1 cut(s) 1104
BshNI GGYRCC 2 cut(s) 328, 997
BsiHKAI GWGCWC 3 cut(s) 318, 465, 903
BsiSI CCGG 1 cut(s) 1101
BslFI GGGAC 2 cut(s) 162, 257
BslI CCNNNNNNNGG 2 cut(s) 325, 534
BsmAI GTCTC 3 cut(s) 374, 683, 827
BsmFI GGGAC 2 cut(s) 162, 257
BsnI GGCC 1 cut(s) 1104
Bso31I GGTCTC 2 cut(s) 374, 827
Bsp1286I GDGCHC 3 cut(s) 318, 465, 903
Bsp143I GATC 6 cut(s) 258, 369, 579, 984, 1026, 1034
BspACI CCGC 1 cut(s) 535
BspANI GGCC 1 cut(s) 1104
BspCNI CTCAG 5 cut(s) 193, 316, 580, 915, 997
BspLI GGNNCC 4 cut(s) 297, 330, 999, 1036
BspPI GGATC 4 cut(s) 574, 1029, 1034, 1042
BspT107I GGYRCC 2 cut(s) 328, 997
BspTNI GGTCTC 2 cut(s) 374, 827
BsrI ACTGG 3 cut(s) 52, 102, 438
BssECI CCNNGG 4 cut(s) 12, 86, 119, 925
BssMI GATC 6 cut(s) 258, 369, 579, 984, 1026, 1034
BssSI CACGAG 1 cut(s) 830
BssT1I CCWWGG 2 cut(s) 86, 119
Bst2BI CACGAG 1 cut(s) 830
Bst2UI CCWGG 1 cut(s) 927
Bst4CI ACNGT 2 cut(s) 493, 1019
BstBAI YACGTR 1 cut(s) 635
BstC8I GCNNGC 2 cut(s) 654, 700
BstDEI CTNAG 7 cut(s) 180, 324, 588, 902, 1005, 1052, 1080
BstENI CCTNNNNNAGG 1 cut(s) 323
BstF5I GGATG 5 cut(s) 150, 178, 307, 948, 1106
BstKTI GATC 6 cut(s) 261, 372, 582, 987, 1029, 1037
BstMAI GTCTC 3 cut(s) 374, 683, 827
BstMBI GATC 6 cut(s) 258, 369, 579, 984, 1026, 1034
BstMWI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
BstNI CCWGG 1 cut(s) 927
BstNSI RCATGY 1 cut(s) 527
BstSCI CCNGG 1 cut(s) 925
BstV1I GCAGC 3 cut(s) 682, 714, 830
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 3 cut(s) 258, 579, 1034
BstYI RGATCY 3 cut(s) 258, 579, 1034
BsuRI GGCC 1 cut(s) 1104
BtsCI GGATG 5 cut(s) 150, 178, 307, 948, 1106
BtsIMutI CAGTG 3 cut(s) 445, 910, 1024
Cac8I GCNNGC 2 cut(s) 654, 700
Cfr13I GGNCC 1 cut(s) 1103
CseI GACGC 1 cut(s) 167
Csp6I GTAC 6 cut(s) 45, 447, 632, 1015, 1056, 1090
CviAII CATG 4 cut(s) 224, 250, 373, 524
CviQI GTAC 6 cut(s) 45, 447, 632, 1015, 1056, 1090
DdeI CTNAG 7 cut(s) 180, 324, 588, 902, 1005, 1052, 1080
DpnI GATC 6 cut(s) 260, 371, 581, 986, 1028, 1036
DpnII GATC 6 cut(s) 258, 369, 579, 984, 1026, 1034
DraI TTTAAA 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 86, 119
Eco31I GGTCTC 2 cut(s) 374, 827
Eco32I GATATC 1 cut(s) 1077
Eco57I CTGAAG 2 cut(s) 321, 801
EcoNI CCTNNNNNAGG 1 cut(s) 323
EcoRI GAATTC 1 cut(s) 825
EcoRII CCWGG 1 cut(s) 925
EcoRV GATATC 1 cut(s) 1077
EcoT14I CCWWGG 2 cut(s) 86, 119
ErhI CCWWGG 2 cut(s) 86, 119
FaeI CATG 4 cut(s) 227, 253, 376, 527
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FaqI GGGAC 2 cut(s) 162, 257
FatI CATG 4 cut(s) 223, 249, 372, 523
FauNDI CATATG 2 cut(s) 163, 658
FblI GTMKAC 2 cut(s) 115, 914
Fnu4HI GCNGC 4 cut(s) 536, 696, 703, 819
FokI GGATG 5 cut(s) 157, 185, 294, 955, 1093
Fsp4HI GCNGC 4 cut(s) 536, 696, 703, 819
FspBI CTAG 3 cut(s) 120, 803, 1132
GluI GCNGC 4 cut(s) 536, 696, 703, 819
GsuI CTGGAG 1 cut(s) 93
HaeIII GGCC 1 cut(s) 1104
HapII CCGG 1 cut(s) 1101
HgaI GACGC 1 cut(s) 167
Hin1II CATG 4 cut(s) 227, 253, 376, 527
HincII GTYRAC 2 cut(s) 116, 868
HindII GTYRAC 2 cut(s) 116, 868
HindIII AAGCTT 1 cut(s) 650
HinfI GANTC 6 cut(s) 8, 467, 480, 566, 930, 1097
HpaII CCGG 1 cut(s) 1101
HphI GGTGA 1 cut(s) 485
Hpy166II GTNNAC 4 cut(s) 116, 868, 915, 1117
Hpy188I TCNGA 2 cut(s) 13, 1031
Hpy188III TCNNGA 5 cut(s) 299, 583, 830, 874, 1004
Hpy8I GTNNAC 4 cut(s) 116, 868, 915, 1117
HpyAV CCTTC 2 cut(s) 394, 500
HpyCH4III ACNGT 2 cut(s) 493, 1019
HpyCH4IV ACGT 1 cut(s) 634
HpyCH4V TGCA 4 cut(s) 515, 656, 698, 968
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
HpyF3I CTNAG 7 cut(s) 180, 324, 588, 902, 1005, 1052, 1080
HpySE526I ACGT 1 cut(s) 634
Hsp92II CATG 4 cut(s) 227, 253, 376, 527
Kzo9I GATC 6 cut(s) 258, 369, 579, 984, 1026, 1034
LmnI GCTCC 4 cut(s) 301, 321, 710, 758
Lsp1109I GCAGC 3 cut(s) 682, 714, 830
LweI GCATC 2 cut(s) 70, 274
MaeI CTAG 3 cut(s) 120, 803, 1132
MaeII ACGT 1 cut(s) 634
MaeIII GTNAC 2 cut(s) 485, 635
MalI GATC 6 cut(s) 260, 371, 581, 986, 1028, 1036
MboI GATC 6 cut(s) 258, 369, 579, 984, 1026, 1034
MboII GAAGA 6 cut(s) 88, 314, 370, 589, 730, 994
MfeI CAATTG 2 cut(s) 238, 711
MflI RGATCY 3 cut(s) 258, 579, 1034
MhlI GDGCHC 3 cut(s) 318, 465, 903
MluCI AATT 6 cut(s) 238, 388, 627, 711, 747, 825
MlyI GAGTC 3 cut(s) 461, 489, 560
MmeI TCCRAC 1 cut(s) 787
MseI TTAA 5 cut(s) 57, 206, 560, 572, 642
MslI CAYNNNNRTG 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 821
MspI CCGG 1 cut(s) 1101
MspR9I CCNGG 1 cut(s) 927
MunI CAATTG 2 cut(s) 238, 711
MvaI CCWGG 1 cut(s) 927
MwoI GCNNNNNNNGC 4 cut(s) 68, 89, 416, 662
NdeI CATATG 2 cut(s) 163, 658
NdeII GATC 6 cut(s) 258, 369, 579, 984, 1026, 1034
NlaIII CATG 4 cut(s) 227, 253, 376, 527
NlaIV GGNNCC 4 cut(s) 297, 330, 999, 1036
NmuCI GTSAC 2 cut(s) 485, 635
NspI RCATGY 1 cut(s) 527
OliI CACNNNNGTG 1 cut(s) 129
PfeI GAWTC 3 cut(s) 8, 930, 1097
PkrI GCNGC 4 cut(s) 537, 697, 704, 820
PleI GAGTC 3 cut(s) 461, 488, 560
PpsI GAGTC 3 cut(s) 461, 488, 560
Ppu21I YACGTR 1 cut(s) 635
Psp6I CCWGG 1 cut(s) 925
PspGI CCWGG 1 cut(s) 925
PspN4I GGNNCC 4 cut(s) 297, 330, 999, 1036
PspPI GGNCC 1 cut(s) 1103
PsuI RGATCY 3 cut(s) 258, 579, 1034
PvuII CAGCTG 1 cut(s) 821
RsaI GTAC 6 cut(s) 46, 448, 633, 1016, 1057, 1091
RsaNI GTAC 6 cut(s) 45, 447, 632, 1015, 1056, 1090
RseI CAYNNNNRTG 1 cut(s) 129
SalI GTCGAC 1 cut(s) 114
SaqAI TTAA 5 cut(s) 57, 206, 560, 572, 642
SatI GCNGC 4 cut(s) 536, 696, 703, 819
Sau3AI GATC 6 cut(s) 258, 369, 579, 984, 1026, 1034
Sau96I GGNCC 1 cut(s) 1103
SchI GAGTC 3 cut(s) 461, 489, 560
ScrFI CCNGG 1 cut(s) 927
SduI GDGCHC 3 cut(s) 318, 465, 903
SfaNI GCATC 2 cut(s) 70, 274
SmiMI CAYNNNNRTG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
SpeI ACTAGT 1 cut(s) 802
Sse9I AATT 6 cut(s) 238, 388, 627, 711, 747, 825
SsiI CCGC 1 cut(s) 535
SspI AATATT 1 cut(s) 895
SspMI CTAG 3 cut(s) 120, 803, 1132
StyD4I CCNGG 1 cut(s) 925
StyI CCWWGG 2 cut(s) 86, 119
TaaI ACNGT 2 cut(s) 493, 1019
TaiI ACGT 1 cut(s) 637
TaqI TCGA 3 cut(s) 115, 465, 848
TasI AATT 6 cut(s) 238, 388, 627, 711, 747, 825
TatI WGTACW 2 cut(s) 1014, 1055
TauI GCSGC 1 cut(s) 538
TfiI GAWTC 3 cut(s) 8, 930, 1097
Tru1I TTAA 5 cut(s) 57, 206, 560, 572, 642
Tru9I TTAA 5 cut(s) 57, 206, 560, 572, 642
TscAI CASTG 3 cut(s) 445, 910, 1024
TseFI GTSAC 2 cut(s) 485, 635
TseI GCWGC 3 cut(s) 695, 702, 818
Tsp45I GTSAC 2 cut(s) 485, 635
TspDTI ATGAA 6 cut(s) 590, 690, 741, 869, 995, 1110
TspGWI ACGGA 1 cut(s) 761
TspRI CASTG 3 cut(s) 445, 910, 1024
XagI CCTNNNNNAGG 1 cut(s) 323
XapI RAATTY 1 cut(s) 825
XceI RCATGY 1 cut(s) 527
XmaJI CCTAGG 1 cut(s) 119
XmiI GTMKAC 2 cut(s) 115, 914
XspI CTAG 3 cut(s) 120, 803, 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.