MD06G1187800.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000255
Physical Location & Seq
Reverse (-)
32522489 .. 32522857
369 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1187800.v1.1.491

Sequence Viewer

Length: 369 bp
ATGAAAACGGGGCAAGTGCAACTCATCTCTGTGCTCAAAGCATGTCCAGGCTCTGTGCGCAATGTCTCACATCTCACAAGAACGGTGGTTTCTCCGACACCTCTTGTCGGTCCTCCAGAGATCAAACTACCGGTAACCTCACAACCGCCGCTGCCACAACTCCATATAGCACACATAGCCGATTCCAACACTGCGATGGCCAAGAAACCGGCCTCATTTGGTAACCCCTGCCTTGATCTCTATTTCCATGTGAAACCATACAGCTGTGGGACAGCCTTTAAGCATCTGAACCGGCTGCTCCCGCTCGCTTGGTCCCATGATCTTCTGACCACCCTGAAGCTCGTCTGTAACCTAGTAGAAGGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

123

Amino Acids

13.15

Weight (kDa)

9.42

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 71 - 118 1.4e-08 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 59
AccBSI CCGCTC 1 cut(s) 304
AciI CCGC 3 cut(s) 146, 149, 302
AcoI YGGCCR 1 cut(s) 198
AcuI CTGAAG 1 cut(s) 356
AfiI CCNNNNNNNGG 1 cut(s) 107
AgeI ACCGGT 1 cut(s) 130
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 2 cut(s) 264, 340
AluI AGCT 2 cut(s) 264, 340
Alw21I GWGCWC 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 2 cut(s) 198, 210
ApeKI GCWGC 2 cut(s) 151, 295
AsiGI ACCGGT 1 cut(s) 130
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 110, 312
AvaII GGWCC 2 cut(s) 110, 312
BalI TGGCCA 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 36
BbvI GCAGC 2 cut(s) 138, 282
BccI CCATC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 353
BisI GCNGC 3 cut(s) 149, 152, 296
BlsI GCNGC 3 cut(s) 150, 153, 297
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 2 cut(s) 110, 312
BmgT120I GGNCC 2 cut(s) 110, 312
BmiI GGNNCC 1 cut(s) 314
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse118I RCCGGY 3 cut(s) 130, 208, 291
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 48
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMI GCAATG 1 cut(s) 67
BseXI GCAGC 2 cut(s) 138, 282
BshFI GGCC 2 cut(s) 200, 212
BshTI ACCGGT 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 36
BsiSI CCGG 3 cut(s) 131, 209, 292
BslFI GGGAC 2 cut(s) 283, 298
BslI CCNNNNNNNGG 1 cut(s) 107
BsmAI GTCTC 1 cut(s) 70
BsmFI GGGAC 2 cut(s) 283, 298
BsnI GGCC 2 cut(s) 200, 212
Bsp1286I GDGCHC 1 cut(s) 36
Bsp143I GATC 3 cut(s) 120, 235, 319
BspACI CCGC 3 cut(s) 146, 149, 302
BspANI GGCC 2 cut(s) 200, 212
BspLI GGNNCC 1 cut(s) 314
BsrBI CCGCTC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 67
BsrFI RCCGGY 3 cut(s) 130, 208, 291
BssAI RCCGGY 3 cut(s) 130, 208, 291
BssMI GATC 3 cut(s) 120, 235, 319
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 306
BstEII GGTNACC 2 cut(s) 133, 221
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 3 cut(s) 123, 238, 322
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 3 cut(s) 120, 235, 319
BstMWI GCNNNNNNNGC 3 cut(s) 57, 176, 301
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 1 cut(s) 45
BstPI GGTNACC 2 cut(s) 133, 221
BstSCI CCNGG 1 cut(s) 46
BstV1I GCAGC 2 cut(s) 138, 282
BsuRI GGCC 2 cut(s) 200, 212
BtgZI GCGATG 1 cut(s) 209
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 306
CaiI CAGNNNCTG 1 cut(s) 53
CfoI GCGC 1 cut(s) 60
Cfr10I RCCGGY 3 cut(s) 130, 208, 291
Cfr13I GGNCC 2 cut(s) 110, 312
CspAI ACCGGT 1 cut(s) 130
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 3 cut(s) 42, 248, 317
CviJI RGCY 8 cut(s) 51, 179, 200, 212, 264, 275, 295, 340
CviKI_1 RGCY 8 cut(s) 51, 179, 200, 212, 264, 275, 295, 340
DpnI GATC 3 cut(s) 122, 237, 321
DpnII GATC 3 cut(s) 120, 235, 319
EaeI YGGCCR 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 110, 312
Eco57I CTGAAG 1 cut(s) 356
Eco91I GGTNACC 2 cut(s) 133, 221
EcoO65I GGTNACC 2 cut(s) 133, 221
EcoRII CCWGG 1 cut(s) 46
FaeI CATG 3 cut(s) 45, 251, 320
FaiI YATR 7 cut(s) 43, 165, 167, 176, 249, 259, 318
FaqI GGGAC 2 cut(s) 283, 298
FatI CATG 3 cut(s) 41, 247, 316
FauI CCCGC 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 149, 152, 296
Fsp4HI GCNGC 3 cut(s) 149, 152, 296
FspBI CTAG 1 cut(s) 353
FspI TGCGCA 1 cut(s) 59
GlaI GCGC 1 cut(s) 59
GluI GCNGC 3 cut(s) 149, 152, 296
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 2 cut(s) 200, 212
HapII CCGG 3 cut(s) 131, 209, 292
HhaI GCGC 1 cut(s) 60
Hin1II CATG 3 cut(s) 45, 251, 320
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HinfI GANTC 1 cut(s) 182
HpaII CCGG 3 cut(s) 131, 209, 292
Hpy188I TCNGA 3 cut(s) 96, 288, 327
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 353
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 176, 301
Hsp92II CATG 3 cut(s) 45, 251, 320
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 3 cut(s) 120, 235, 319
LmnI GCTCC 1 cut(s) 303
LpnPI CCDG 8 cut(s) 33, 60, 129, 144, 222, 241, 305, 347
Lsp1109I GCAGC 2 cut(s) 138, 282
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 353
MaeIII GTNAC 3 cut(s) 133, 221, 347
MalI GATC 3 cut(s) 122, 237, 321
MbiI CCGCTC 1 cut(s) 304
MboI GATC 3 cut(s) 120, 235, 319
MboII GAAGA 1 cut(s) 314
MhlI GDGCHC 1 cut(s) 36
MlsI TGGCCA 1 cut(s) 200
MluNI TGGCCA 1 cut(s) 200
MmeI TCCRAC 2 cut(s) 119, 210
MnlI CCTC 5 cut(s) 111, 123, 148, 223, 356
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MseI TTAA 2 cut(s) 279, 367
MslI CAYNNNNRTG 2 cut(s) 29, 194
Msp20I TGGCCA 1 cut(s) 200
MspA1I CMGCKG 2 cut(s) 151, 264
MspI CCGG 3 cut(s) 131, 209, 292
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 57, 176, 301
NdeII GATC 3 cut(s) 120, 235, 319
NlaIII CATG 3 cut(s) 45, 251, 320
NlaIV GGNNCC 1 cut(s) 314
NsbI TGCGCA 1 cut(s) 59
NspI RCATGY 1 cut(s) 45
PfeI GAWTC 1 cut(s) 182
PinAI ACCGGT 1 cut(s) 130
PkrI GCNGC 3 cut(s) 150, 153, 297
Psp6I CCWGG 1 cut(s) 46
PspEI GGTNACC 2 cut(s) 133, 221
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 2 cut(s) 110, 312
PstNI CAGNNNCTG 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 264
RseI CAYNNNNRTG 2 cut(s) 29, 194
SaqAI TTAA 2 cut(s) 279, 367
SatI GCNGC 3 cut(s) 149, 152, 296
Sau3AI GATC 3 cut(s) 120, 235, 319
Sau96I GGNCC 2 cut(s) 110, 312
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 36
SetI ASST 6 cut(s) 103, 140, 266, 342, 354, 367
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 2 cut(s) 110, 312
SmiMI CAYNNNNRTG 2 cut(s) 29, 194
SsiI CCGC 3 cut(s) 146, 149, 302
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 85
TaqII GACCGA 1 cut(s) 98
TauI GCSGC 1 cut(s) 151
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 279, 367
Tru9I TTAA 2 cut(s) 279, 367
TscAI CASTG 1 cut(s) 196
TseI GCWGC 2 cut(s) 151, 295
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 196
VpaK11BI GGWCC 2 cut(s) 110, 312
XceI RCATGY 1 cut(s) 45
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.