Prupe.5G172200_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000255
Physical Location & Seq
Forward (+)
14688837 .. 14689896
1060 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G172200.1

Sequence Viewer

Length: 1041 bp
ATGTCGAAGCCAGAGGCAGAGACACACCCTGATCAGCTTGTCAACAACAACAACAACCCATGCCTTGATCTCTTTTACAACGTCGGGGAAGAAGACGTTCACGACCCGGCCCAGATGGAGGCCTCGTGTAATTATGTGAAGCAAGTGCTACCTCTGGCCTGGTCCCACAATCCCCTAACCGCCCTCAAGCTCGTCTGCAACCTACTGGATGGAAAGTTCAATCTCTCTGCCTTCTACACGGCTGCGTTTTGGCTCCACCACAACCACCCCAAGACACTATTGTGCAACCTGGCGTCTATTGTCCGGCCCTTCCGGGCTTTTTCCAACTCAATGAACATTGTGTACCACATCCTTCGAGAAGGCCAAGACATTTACAAGACTACTCGCCGTCGGGGCTACAACCGTTATCAATTGTTGCACAAGGCTGTTAAGCGGTACAAGCATGACCGCGATTATCAATTGTTGCACGACCAGGTTTCGGATATTTTGGCCGAGATGTTCAAGTCTGATATGGAGAAATTGAAATTCAAGGAGGCGGCGGAGGAGCAGAACAAAAACAACAAATTGAAGCAATTATCTGAATCTGATAATGACGACAGAATAACCATGGCCGCATGCGATATACATTCTGCCGTGTCAACATTCGCGGATTACAACCCCGACTACAGCATCACTTCGCTGCTTGAAAACATTGCCAGGAAGTTTTTCCCGCCAGAAGAATATCACAAATTAGAATTAGGTGGAGGTCATGGTAAAGGAAAACGGGCCAAGGCCAAAGATGCCGACAGAGTCATGGTCAAGCGGCTCAAGGATGAGGTTTTGCCCTCCTTGAAGAAGGCCTACTTTGCCCAGGATTATCCGCCAGACGAGGCCAGTGCTGTTGAGACCTATTTGGAGAAGGTGAAAGCCAGCTGCTGCTGCAGTGGCAGTGCTGGCAAGATTTCGTCCTCCTCGTCCTTGTTGGCGGATGCTCTGCTTCCGCATGAGATCACAGGCTACGTGCACCATTGGAATTTAGGCCGCGCTGCTGAGCTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

347

Amino Acids

39.35

Weight (kDa)

6.97

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 450, 647, 1023
AcoI YGGCCR 2 cut(s) 489, 609
AcsI RAATTY 2 cut(s) 524, 1012
AcyI GRCGYC 1 cut(s) 293
AfaI GTAC 2 cut(s) 344, 437
AfiI CCNNNNNNNGG 2 cut(s) 118, 478
AgsI TTSAA 7 cut(s) 220, 502, 523, 529, 568, 686, 832
AjnI CCWGG 5 cut(s) 158, 288, 471, 695, 849
AleI CACNNNNGTG 1 cut(s) 280
AloI GAACNNNNNNTCC 2 cut(s) 200, 232
AluBI AGCT 4 cut(s) 37, 190, 912, 1033
AluI AGCT 4 cut(s) 37, 190, 912, 1033
Alw21I GWGCWC 2 cut(s) 1005, 1035
Alw26I GTCTC 2 cut(s) 14, 878
Alw44I GTGCAC 1 cut(s) 1001
AlwNI CAGNNNCTG 1 cut(s) 915
ApaLI GTGCAC 1 cut(s) 1001
ApeKI GCWGC 6 cut(s) 242, 679, 912, 915, 918, 1025
ApoI RAATTY 2 cut(s) 524, 1012
Asp700I GAANNNNTTC 2 cut(s) 96, 704
AspLEI GCGC 1 cut(s) 1025
AspS9I GGNCC 4 cut(s) 109, 162, 306, 765
AsuC2I CCSGG 2 cut(s) 107, 314
AsuHPI GGTGA 1 cut(s) 913
AvaII GGWCC 1 cut(s) 162
BaeGI GKGCMC 1 cut(s) 1005
BanII GRGCYC 1 cut(s) 1035
BarI GAAGNNNNNNTAC 2 cut(s) 824, 856
BauI CACGAG 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 99
Bbv12I GWGCWC 2 cut(s) 1005, 1035
BbvI GCAGC 6 cut(s) 229, 666, 899, 902, 905, 1012
BccI CCATC 2 cut(s) 109, 203
BceAI ACGGC 3 cut(s) 255, 372, 617
BcgI CGANNNNNNTGC 2 cut(s) 857, 891
BciT130I CCWGG 5 cut(s) 160, 290, 473, 697, 851
BclI TGATCA 1 cut(s) 31
BcnI CCSGG 2 cut(s) 107, 314
BcoDI GTCTC 2 cut(s) 14, 878
BfmI CTRYAG 2 cut(s) 664, 919
BglI GCCNNNNNGGC 1 cut(s) 393
BlpI GCTNAGC 1 cut(s) 1029
Bme1390I CCNGG 7 cut(s) 107, 160, 290, 314, 473, 697, 851
Bme18I GGWCC 1 cut(s) 162
BmgT120I GGNCC 4 cut(s) 109, 162, 306, 765
BmiI GGNNCC 2 cut(s) 164, 254
BmrFI CCNGG 7 cut(s) 107, 160, 290, 314, 473, 697, 851
BmsI GCATC 3 cut(s) 678, 769, 958
BpiI GAAGAC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 1019
Bpu1102I GCTNAGC 1 cut(s) 1029
BpuEI CTTGAG 2 cut(s) 170, 791
BpuMI CCSGG 2 cut(s) 107, 314
BsaAI YACGTR 1 cut(s) 1000
BsaHI GRCGYC 1 cut(s) 293
BsaI GGTCTC 1 cut(s) 878
BsaJI CCNNGG 3 cut(s) 606, 768, 849
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 478
Bse1I ACTGG 3 cut(s) 210, 873, 1036
Bse3DI GCAATG 1 cut(s) 690
BseBI CCWGG 5 cut(s) 160, 290, 473, 697, 851
BseDI CCNNGG 3 cut(s) 606, 768, 849
BseGI GGATG 4 cut(s) 214, 348, 817, 973
BseLI CCNNNNNNNGG 2 cut(s) 118, 478
BseMI GCAATG 1 cut(s) 690
BseMII CTCAG 1 cut(s) 1020
BseNI ACTGG 3 cut(s) 210, 873, 1036
BseRI GAGGAG 2 cut(s) 557, 940
BseSI GKGCMC 1 cut(s) 1005
BseXI GCAGC 6 cut(s) 229, 666, 899, 902, 905, 1012
Bsh1236I CGCG 3 cut(s) 450, 647, 1023
BsiHKAI GWGCWC 2 cut(s) 1005, 1035
BsiSI CCGG 3 cut(s) 107, 304, 313
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 2 cut(s) 118, 478
BsmAI GTCTC 2 cut(s) 14, 878
BsmFI GGGAC 1 cut(s) 148
Bso31I GGTCTC 1 cut(s) 878
Bsp1286I GDGCHC 2 cut(s) 1005, 1035
Bsp143I GATC 3 cut(s) 31, 67, 987
Bsp1720I GCTNAGC 1 cut(s) 1029
Bsp19I CCATGG 1 cut(s) 606
BspCNI CTCAG 1 cut(s) 1021
BspFNI CGCG 3 cut(s) 450, 647, 1023
BspLI GGNNCC 2 cut(s) 164, 254
BspMAI CTGCAG 1 cut(s) 923
BspTNI GGTCTC 1 cut(s) 878
BsrDI GCAATG 1 cut(s) 690
BsrI ACTGG 3 cut(s) 210, 873, 1036
BssECI CCNNGG 3 cut(s) 606, 768, 849
BssMI GATC 3 cut(s) 31, 67, 987
BssNI GRCGYC 1 cut(s) 293
BssSI CACGAG 1 cut(s) 124
BssT1I CCWWGG 2 cut(s) 606, 768
Bst2BI CACGAG 1 cut(s) 124
Bst2UI CCWGG 5 cut(s) 160, 290, 473, 697, 851
Bst4CI ACNGT 1 cut(s) 404
BstACI GRCGYC 1 cut(s) 293
BstBAI YACGTR 1 cut(s) 1000
BstC8I GCNNGC 3 cut(s) 616, 910, 934
BstDEI CTNAG 1 cut(s) 1029
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 4 cut(s) 214, 348, 817, 973
BstFNI CGCG 3 cut(s) 450, 647, 1023
BstHHI GCGC 1 cut(s) 1025
BstKTI GATC 3 cut(s) 34, 70, 990
BstMAI GTCTC 2 cut(s) 14, 878
BstMBI GATC 3 cut(s) 31, 67, 987
BstMWI GCNNNNNNNGC 7 cut(s) 393, 439, 779, 845, 918, 924, 933
BstNI CCWGG 5 cut(s) 160, 290, 473, 697, 851
BstNSI RCATGY 1 cut(s) 618
BstSCI CCNGG 7 cut(s) 105, 158, 288, 312, 471, 695, 849
BstSFI CTRYAG 2 cut(s) 664, 919
BstSLI GKGCMC 1 cut(s) 1005
BstUI CGCG 3 cut(s) 450, 647, 1023
BstV1I GCAGC 6 cut(s) 229, 666, 899, 902, 905, 1012
BstV2I GAAGAC 1 cut(s) 99
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 4 cut(s) 214, 348, 817, 973
BtsI GCAGTG 2 cut(s) 928, 934
BtsIMutI CAGTG 3 cut(s) 880, 928, 934
Cac8I GCNNGC 3 cut(s) 616, 910, 934
CaiI CAGNNNCTG 1 cut(s) 915
CfoI GCGC 1 cut(s) 1025
Cfr13I GGNCC 4 cut(s) 109, 162, 306, 765
CseI GACGC 1 cut(s) 282
CsiI ACCWGGT 1 cut(s) 471
Csp6I GTAC 2 cut(s) 343, 436
CviAII CATG 7 cut(s) 60, 443, 607, 615, 749, 793, 983
CviQI GTAC 2 cut(s) 343, 436
DdeI CTNAG 1 cut(s) 1029
DpnI GATC 3 cut(s) 33, 69, 989
DpnII GATC 3 cut(s) 31, 67, 987
EaeI YGGCCR 2 cut(s) 489, 609
EciI GGCGGA 3 cut(s) 554, 849, 980
Ecl136II GAGCTC 1 cut(s) 1033
Eco130I CCWWGG 2 cut(s) 606, 768
Eco147I AGGCCT 2 cut(s) 122, 839
Eco24I GRGCYC 1 cut(s) 1035
Eco31I GGTCTC 1 cut(s) 878
Eco47I GGWCC 1 cut(s) 162
Eco53kI GAGCTC 1 cut(s) 1033
EcoICRI GAGCTC 1 cut(s) 1033
EcoRII CCWGG 5 cut(s) 158, 288, 471, 695, 849
EcoT14I CCWWGG 2 cut(s) 606, 768
EcoT38I GRGCYC 1 cut(s) 1035
ErhI CCWWGG 2 cut(s) 606, 768
FaeI CATG 7 cut(s) 63, 446, 610, 618, 752, 796, 986
FalI AAGNNNNNCTT 2 cut(s) 827, 859
FaqI GGGAC 1 cut(s) 148
FatI CATG 7 cut(s) 59, 442, 606, 614, 748, 792, 982
FauI CCCGC 1 cut(s) 717
FbaI TGATCA 1 cut(s) 31
FokI GGATG 4 cut(s) 221, 335, 824, 980
FriOI GRGCYC 1 cut(s) 1035
GlaI GCGC 1 cut(s) 1024
GsuI CTGGAG 1 cut(s) 1019
HapII CCGG 3 cut(s) 107, 304, 313
HgaI GACGC 1 cut(s) 282
HhaI GCGC 1 cut(s) 1025
Hin1I GRCGYC 1 cut(s) 293
Hin1II CATG 7 cut(s) 63, 446, 610, 618, 752, 796, 986
Hin6I GCGC 1 cut(s) 1023
HinP1I GCGC 1 cut(s) 1023
HincII GTYRAC 2 cut(s) 43, 639
HindII GTYRAC 2 cut(s) 43, 639
HinfI GANTC 2 cut(s) 581, 789
HpaII CCGG 3 cut(s) 107, 304, 313
HphI GGTGA 1 cut(s) 913
Hpy166II GTNNAC 5 cut(s) 43, 100, 343, 639, 1003
Hpy188I TCNGA 4 cut(s) 481, 508, 580, 586
Hpy188III TCNNGA 2 cut(s) 101, 356
Hpy8I GTNNAC 5 cut(s) 43, 100, 343, 639, 1003
Hpy99I CGWCG 2 cut(s) 86, 393
HpyAV CCTTC 6 cut(s) 241, 319, 353, 362, 829, 892
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 3 cut(s) 81, 96, 999
HpyCH4V TGCA 6 cut(s) 198, 285, 418, 466, 921, 1003
HpyF10VI GCNNNNNNNGC 7 cut(s) 393, 439, 779, 845, 918, 924, 933
HpyF3I CTNAG 1 cut(s) 1029
HpySE526I ACGT 3 cut(s) 81, 96, 999
Hsp92I GRCGYC 1 cut(s) 293
Hsp92II CATG 7 cut(s) 63, 446, 610, 618, 752, 796, 986
HspAI GCGC 1 cut(s) 1023
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 3 cut(s) 31, 67, 987
LmnI GCTCC 3 cut(s) 258, 544, 1038
Lsp1109I GCAGC 6 cut(s) 229, 666, 899, 902, 905, 1012
LweI GCATC 3 cut(s) 678, 769, 958
MabI ACCWGGT 1 cut(s) 471
MaeII ACGT 3 cut(s) 81, 96, 999
MalI GATC 3 cut(s) 33, 69, 989
MboI GATC 3 cut(s) 31, 67, 987
MboII GAAGA 4 cut(s) 101, 104, 728, 844
MfeI CAATTG 2 cut(s) 410, 458
MhlI GDGCHC 2 cut(s) 1005, 1035
MlyI GAGTC 1 cut(s) 798
MmeI TCCRAC 1 cut(s) 348
MroXI GAANNNNTTC 2 cut(s) 96, 704
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 912
MspI CCGG 3 cut(s) 107, 304, 313
MspR9I CCNGG 7 cut(s) 107, 160, 290, 314, 473, 697, 851
MunI CAATTG 2 cut(s) 410, 458
MvaI CCWGG 5 cut(s) 160, 290, 473, 697, 851
MvnI CGCG 3 cut(s) 450, 647, 1023
MwoI GCNNNNNNNGC 7 cut(s) 393, 439, 779, 845, 918, 924, 933
NciI CCSGG 2 cut(s) 107, 314
NcoI CCATGG 1 cut(s) 606
NdeII GATC 3 cut(s) 31, 67, 987
NlaIII CATG 7 cut(s) 63, 446, 610, 618, 752, 796, 986
NlaIV GGNNCC 2 cut(s) 164, 254
NmeAIII GCCGAG 1 cut(s) 517
NspI RCATGY 1 cut(s) 618
OliI CACNNNNGTG 1 cut(s) 280
PaeI GCATGC 1 cut(s) 618
PceI AGGCCT 2 cut(s) 122, 839
PcsI WCGNNNNNNNCGW 1 cut(s) 950
PdmI GAANNNNTTC 2 cut(s) 96, 704
PfeI GAWTC 1 cut(s) 581
PflFI GACNNNGTC 1 cut(s) 788
PleI GAGTC 1 cut(s) 797
PpsI GAGTC 1 cut(s) 797
Ppu21I YACGTR 1 cut(s) 1000
Psp124BI GAGCTC 1 cut(s) 1035
Psp6I CCWGG 5 cut(s) 158, 288, 471, 695, 849
PspGI CCWGG 5 cut(s) 158, 288, 471, 695, 849
PspN4I GGNNCC 2 cut(s) 164, 254
PspPI GGNCC 4 cut(s) 109, 162, 306, 765
PsrI GAACNNNNNNTAC 2 cut(s) 326, 358
PstI CTGCAG 1 cut(s) 923
PstNI CAGNNNCTG 1 cut(s) 915
PsyI GACNNNGTC 1 cut(s) 788
PvuII CAGCTG 1 cut(s) 912
RsaI GTAC 2 cut(s) 344, 437
RsaNI GTAC 2 cut(s) 343, 436
RseI CAYNNNNRTG 1 cut(s) 280
SacI GAGCTC 1 cut(s) 1035
SaqAI TTAA 1 cut(s) 429
Sau3AI GATC 3 cut(s) 31, 67, 987
Sau96I GGNCC 4 cut(s) 109, 162, 306, 765
SchI GAGTC 1 cut(s) 798
ScrFI CCNGG 7 cut(s) 107, 160, 290, 314, 473, 697, 851
SduI GDGCHC 2 cut(s) 1005, 1035
SexAI ACCWGGT 1 cut(s) 471
SfaNI GCATC 3 cut(s) 678, 769, 958
SfcI CTRYAG 2 cut(s) 664, 919
SinI GGWCC 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 280
SmlI CTYRAG 2 cut(s) 185, 806
SmoI CTYRAG 2 cut(s) 185, 806
SphI GCATGC 1 cut(s) 618
SseBI AGGCCT 2 cut(s) 122, 839
SstI GAGCTC 1 cut(s) 1035
StuI AGGCCT 2 cut(s) 122, 839
StyD4I CCNGG 7 cut(s) 105, 158, 288, 312, 471, 695, 849
StyI CCWWGG 2 cut(s) 606, 768
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 3 cut(s) 84, 99, 1002
TaqI TCGA 2 cut(s) 5, 355
TauI GCSGC 4 cut(s) 539, 614, 805, 1023
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 3 cut(s) 880, 928, 934
TseI GCWGC 6 cut(s) 242, 679, 912, 915, 918, 1025
TspDTI ATGAA 1 cut(s) 347
TspRI CASTG 3 cut(s) 880, 928, 934
Tth111I GACNNNGTC 1 cut(s) 788
VneI GTGCAC 1 cut(s) 1001
VpaK11BI GGWCC 1 cut(s) 162
XapI RAATTY 2 cut(s) 524, 1012
XceI RCATGY 1 cut(s) 618
XmnI GAANNNNTTC 2 cut(s) 96, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.