RLG00000004946

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000255
Physical Location & Seq
Forward (+)
63898926 .. 63899381
456 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004946

Sequence Viewer

Length: 456 bp
ATGGCTCCTTCACCCAGTCTCACCGGCCCTCCAAATCTCAACACTCCACCACCCCAAGACCTGACCAGGCCAACACTCACAACAACCCCCCCAATGGGCCTGACCGAGAACTGCTCCGCCACCTTCTTGAGCTCCGGCAACCCCTGCCTCGATCTCTTCTTCCACGTCGTTCCGAGCACGCCGGCCCAGTATCTCATCAAGCAGCTCCCTCTGGCCTGGGCCCACAGTCCCCTAACCTCTCTAAAACTCATCTGCAACCTCCGAGGTGTACGTGGCACAGGGAAGTCCGACAAGGAACGGTTCTACACGGCGGCGCTTTGGCTCCACAGGTACCACCCCAATACCCTAGCCTGCAATTTAGCCTCCATTGCCGAGTTTGGGTATTTTAAAGATTTTCCAGAGATTCTTTACCGGCTGATCGAAGGCCACGACGTGAGGAAGAACCAGAAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

152

Amino Acids

16.75

Weight (kDa)

8.98

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 35 - 149 2.7e-43 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 330
AccB1I GGYRCC 1 cut(s) 330
AciI CCGC 2 cut(s) 117, 311
AdeI CACNNNGTG 1 cut(s) 433
AfaI GTAC 2 cut(s) 270, 332
AfiI CCNNNNNNNGG 3 cut(s) 94, 95, 378
AjiI CACGTC 2 cut(s) 166, 433
AjnI CCWGG 2 cut(s) 65, 215
AluBI AGCT 2 cut(s) 132, 205
AluI AGCT 2 cut(s) 132, 205
Alw21I GWGCWC 2 cut(s) 134, 179
Alw26I GTCTC 1 cut(s) 23
AoxI GGCC 8 cut(s) 25, 68, 97, 183, 213, 219, 424, 450
ApaI GGGCCC 1 cut(s) 223
ApeKI GCWGC 1 cut(s) 202
Asp718I GGTACC 1 cut(s) 330
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 5 cut(s) 26, 97, 184, 219, 220
AsuHPI GGTGA 2 cut(s) 3, 13
BaeGI GKGCMC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 330
BanII GRGCYC 2 cut(s) 134, 223
Bbv12I GWGCWC 2 cut(s) 134, 179
BbvI GCAGC 1 cut(s) 214
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 2 cut(s) 67, 217
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 2 cut(s) 347, 454
BfoI RGCGCY 1 cut(s) 317
BisI GCNGC 2 cut(s) 203, 312
BlsI GCNGC 2 cut(s) 204, 313
Bme1390I CCNGG 2 cut(s) 67, 217
BmgBI CACGTC 2 cut(s) 166, 433
BmgT120I GGNCC 5 cut(s) 26, 97, 184, 219, 220
BmiI GGNNCC 4 cut(s) 6, 221, 323, 332
BmrFI CCNGG 2 cut(s) 67, 217
BmrI ACTGGG 2 cut(s) 9, 181
BmuI ACTGGG 2 cut(s) 9, 181
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpuEI CTTGAG 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 216, 262
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 95, 378
Bse118I RCCGGY 3 cut(s) 23, 181, 411
Bse1I ACTGG 2 cut(s) 15, 187
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 2 cut(s) 67, 217
BseDI CCNNGG 2 cut(s) 216, 262
BseLI CCNNNNNNNGG 3 cut(s) 94, 95, 378
BseMI GCAATG 1 cut(s) 366
BseNI ACTGG 2 cut(s) 15, 187
BseSI GKGCMC 1 cut(s) 223
BseXI GCAGC 1 cut(s) 214
BshFI GGCC 8 cut(s) 27, 70, 99, 185, 215, 221, 426, 452
BshNI GGYRCC 1 cut(s) 330
BsiHKAI GWGCWC 2 cut(s) 134, 179
BsiSI CCGG 4 cut(s) 24, 135, 182, 412
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 3 cut(s) 94, 95, 378
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 8 cut(s) 27, 70, 99, 185, 215, 221, 426, 452
Bsp120I GGGCCC 1 cut(s) 219
Bsp1286I GDGCHC 3 cut(s) 134, 179, 223
Bsp143I GATC 2 cut(s) 151, 417
BspACI CCGC 2 cut(s) 117, 311
BspANI GGCC 8 cut(s) 27, 70, 99, 185, 215, 221, 426, 452
BspLI GGNNCC 4 cut(s) 6, 221, 323, 332
BspT107I GGYRCC 1 cut(s) 330
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 3 cut(s) 23, 181, 411
BsrI ACTGG 2 cut(s) 15, 187
BssAI RCCGGY 3 cut(s) 23, 181, 411
BssECI CCNNGG 2 cut(s) 216, 262
BssMI GATC 2 cut(s) 151, 417
Bst2UI CCWGG 2 cut(s) 67, 217
Bst4CI ACNGT 2 cut(s) 227, 300
Bst6I CTCTTC 1 cut(s) 161
BstAPI GCANNNNNTGC 1 cut(s) 144
BstBAI YACGTR 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 179, 183, 352
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 2 cut(s) 154, 420
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 2 cut(s) 151, 417
BstMWI GCNNNNNNNGC 2 cut(s) 144, 368
BstNI CCWGG 2 cut(s) 67, 217
BstSCI CCNGG 2 cut(s) 65, 215
BstSLI GKGCMC 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 214
BsuRI GGCC 8 cut(s) 27, 70, 99, 185, 215, 221, 426, 452
BtrI CACGTC 2 cut(s) 166, 433
Cac8I GCNNGC 3 cut(s) 179, 183, 352
CfoI GCGC 1 cut(s) 316
Cfr10I RCCGGY 3 cut(s) 23, 181, 411
Cfr13I GGNCC 5 cut(s) 26, 97, 184, 219, 220
Csp6I GTAC 2 cut(s) 269, 331
CviQI GTAC 2 cut(s) 269, 331
DpnI GATC 2 cut(s) 153, 419
DpnII GATC 2 cut(s) 151, 417
DraI TTTAAA 1 cut(s) 388
DraIII CACNNNGTG 1 cut(s) 433
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EciI GGCGGA 1 cut(s) 106
Ecl136II GAGCTC 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 452
Eco24I GRGCYC 2 cut(s) 134, 223
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 65, 215
EcoT38I GRGCYC 2 cut(s) 134, 223
FaqI GGGAC 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 203, 312
FriOI GRGCYC 2 cut(s) 134, 223
Fsp4HI GCNGC 2 cut(s) 203, 312
FspBI CTAG 2 cut(s) 347, 454
GlaI GCGC 1 cut(s) 315
GluI GCNGC 2 cut(s) 203, 312
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 8 cut(s) 27, 70, 99, 185, 215, 221, 426, 452
HapII CCGG 4 cut(s) 24, 135, 182, 412
HhaI GCGC 1 cut(s) 316
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 1 cut(s) 403
HpaII CCGG 4 cut(s) 24, 135, 182, 412
HphI GGTGA 2 cut(s) 3, 13
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 3 cut(s) 174, 263, 289
Hpy188III TCNNGA 2 cut(s) 127, 398
Hpy8I GTNNAC 1 cut(s) 269
Hpy99I CGWCG 2 cut(s) 170, 434
HpyAV CCTTC 4 cut(s) 18, 133, 416, 442
HpyCH4III ACNGT 2 cut(s) 227, 300
HpyCH4IV ACGT 3 cut(s) 165, 271, 432
HpyCH4V TGCA 2 cut(s) 255, 354
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 368
HpySE526I ACGT 3 cut(s) 165, 271, 432
HspAI GCGC 1 cut(s) 314
KpnI GGTACC 1 cut(s) 334
KroI GCCGGC 1 cut(s) 181
KroNI GCCGGC 1 cut(s) 183
Kzo9I GATC 2 cut(s) 151, 417
LmnI GCTCC 5 cut(s) 10, 119, 137, 210, 327
Lsp1109I GCAGC 1 cut(s) 214
MaeI CTAG 2 cut(s) 347, 454
MaeII ACGT 3 cut(s) 165, 271, 432
MalI GATC 2 cut(s) 153, 419
MboI GATC 2 cut(s) 151, 417
MboII GAAGA 3 cut(s) 148, 151, 451
MhlI GDGCHC 3 cut(s) 134, 179, 223
MluCI AATT 1 cut(s) 355
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 8 cut(s) 39, 158, 219, 247, 257, 269, 373, 429
MroNI GCCGGC 1 cut(s) 181
MseI TTAA 1 cut(s) 387
MspI CCGG 4 cut(s) 24, 135, 182, 412
MspR9I CCNGG 2 cut(s) 67, 217
MvaI CCWGG 2 cut(s) 67, 217
MwoI GCNNNNNNNGC 2 cut(s) 144, 368
NaeI GCCGGC 1 cut(s) 183
NdeII GATC 2 cut(s) 151, 417
NgoMIV GCCGGC 1 cut(s) 181
NlaIV GGNNCC 4 cut(s) 6, 221, 323, 332
NmeAIII GCCGAG 1 cut(s) 397
PceI AGGCCT 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PdiI GCCGGC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 403
PkrI GCNGC 2 cut(s) 204, 313
Ppu21I YACGTR 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 65, 215
PspGI CCWGG 2 cut(s) 65, 215
PspN4I GGNNCC 4 cut(s) 6, 221, 323, 332
PspOMI GGGCCC 1 cut(s) 219
PspPI GGNCC 5 cut(s) 26, 97, 184, 219, 220
RsaI GTAC 2 cut(s) 270, 332
RsaNI GTAC 2 cut(s) 269, 331
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 2 cut(s) 203, 312
Sau3AI GATC 2 cut(s) 151, 417
Sau96I GGNCC 5 cut(s) 26, 97, 184, 219, 220
ScrFI CCNGG 2 cut(s) 67, 217
SduI GDGCHC 3 cut(s) 134, 179, 223
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 1 cut(s) 355
SseBI AGGCCT 1 cut(s) 452
SsiI CCGC 2 cut(s) 117, 311
SspMI CTAG 2 cut(s) 347, 454
SstI GAGCTC 1 cut(s) 134
StuI AGGCCT 1 cut(s) 452
StyD4I CCNGG 2 cut(s) 65, 215
TaaI ACNGT 2 cut(s) 227, 300
TaiI ACGT 3 cut(s) 168, 274, 435
TaqI TCGA 2 cut(s) 150, 420
TaqII GACCGA 1 cut(s) 119
TasI AATT 1 cut(s) 355
TauI GCSGC 1 cut(s) 314
TfiI GAWTC 1 cut(s) 403
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TseI GCWGC 1 cut(s) 202
XspI CTAG 2 cut(s) 347, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.