RLG00000004944

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000255
Physical Location & Seq
Forward (+)
63885607 .. 63887625
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004944

Sequence Viewer

Length: 2019 bp
ATGGCTCTTCTTCTCGGTCCTCCATCCCTCAGGCAATCCCCAACCCCGGCTGCCCAACAACCACAGGCTCAAGCCCCTTCCGGCGACCCATTCATCGACCTCATGGTCGCCGATTACAACAACCTGGCCCAGCCTCCGATCACCAGGCCCCAAATGGGCTTCACCGAGAACGGTTCAGCCACATTCGTCACCACCGGCGATCCTTGCCTCGATCTCTTCTTCCACGTCGTCCCCAACACTCCGGCATCGTATCTGAACCAGCAGCTCCCTCTGGCCTGGGCCCACAACGCCCTTACCACCCTCAAGCTCATTTGCAACCTCCGCGGCGTACGTGGCACCGGCAAGTCTGACAAAGAAGGATTGTACACGGCTGCGTTTTGGCTCCACAAGAACCACCCCAAAACCCTAGCCTGCAACGTCGCGTCCCTCGCCGAGTTCGGGTATTTCAAGGACCTGCTGGAGATTCTGTACCGCCTTCTAGAAGGTGAGGATGTGAGGAAGAATCAGAAGTCCGAGTGGCTGCAGAGGAAGTCCGGCAGGGGTAGGGTTCGGACGGCGGCGGTTCCATTCTTCAGAGGAGGTCGCGGCAGACGCGGCGGCGGTGGTGCGGAAAAGAGAACCAAGAGCGGTGGCCGGAGAGGAAACAACAGCCGTGTGGCTAGGGAGGTGAGGGTGCTGAACTCAATGGAGAGGGCAAAATGGGAAAAGGAAAAGGCCTCTGCTTTGAGGAAGGAGAAGTTCGCAGCCATGGCCAAGAAGGCTGTTGAGAGGTACCAGCGTGACCCGGACTACAGATTCTTGCACGAACGGGTTTCAGATCTTTTCGCAGAGTGCTTGAAATCGGATATGGAGAATTTGAAGTCCAATCAGTACAAGAAGATTAGTCTTGCGGCGAAATGGTGTCCTTCCCTGGACTCGTCTTTTGATCGAGCCACTCTGCTCTGTGAGAGCATTGCCAGGAAGGTTTTCGCTAGGGAATCGTATCCGGAATATGAAGGAATTGAGGACGCACATTATGCTTATAGAGTCCGAGACCGGCTGAGGAAGGATGTGTTGGTGCCATTGAGGATAGTGTTGGAGTTGCCGGAGGTTTATATGGGCGCTAATCTGTGGGGTGCCATTCCTTACAACAGAGTGGCCTCAGTGGCGATGAAGCTTTACAAGGAGAAGTTCTTGAAGCATGATGAGGAGAGGTTTAAGAAGTATTTGGAGGATGTGAAGGCAGGGAAGTCTACTATTGCGGCCGGTGCCCTGCTTCCGCATGAGATCATAGCCTCTCTGAATGATGGTGATGGAGGGCAGGTGGCCGAGCTTCAGTGGAAGAGAGTGGTGGATGACTTGTTGAAGGAGGGCAAGATGAAGAACTGCTTGGCTGTGTGTGATGTGTCCGGAAGCATGAGTGGGACTCCTATGGATGTGTGTGTTGCTTTGGGGATGTTGGTGGCTGAGTTGAATGAGGAGCCATGGAAAGGGAAGGTGATCACATTCAGTGCCAATCCTCAGCTTCACTTGATACAAGGCAATGATCTAAGCTCCAAGTCTGAGTTTGTGAAGCGGATGGACTGGGGAGGCAACACTGATTTTCAGAAGGTGTTTGATTTGATTCTCCAAGTGGCTGTGAAGGGGAATCTGAAGCCGGAGCAAATGATTAAGAGGGTGTTTGTTTTCAGTGACATGGAATTTGATCAGGCTTCGGGTTATGGTTATGGAGGATGTGGATATGGGCGGTACGGAAGGAATGATGTTCCAAGGGGATGGGAGACTGATTATGAGGTGATTCAGAGGAAGTACAGAGAGAAAGGGTATGGTGATGCGGTGCCACAGATAGTTTTTTGGAATCTGAGGGACTCGAAGGCTACCCCTGTGCCTGGGACTCAACCAGGAGTGGCGCTACTGAGTGGCTTCTCCAAGAATTTGCTTAAGCTGTTCTTGGATAATGATGGGGAGATTCGCCCTGACACAACCATGGAAGCTGCAATCTCGGGTCCAGAGTATCAGAAGCTGGTTGTGCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

673

Amino Acids

75.34

Weight (kDa)

9.1

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 55 - 453 2.3e-136 Domain of unknown function (DUF2828)
DUF7788 PF25043 455 - 651 1.2e-78 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1291
AasI GACNNNNNNGTC 1 cut(s) 104
Acc36I ACCTGC 2 cut(s) 462, 1291
Acc65I GGTACC 1 cut(s) 771
AccB1I GGYRCC 6 cut(s) 335, 771, 1057, 1115, 1247, 1816
AccBSI CCGCTC 1 cut(s) 627
AccI GTMKAC 1 cut(s) 1232
AccII CGCG 4 cut(s) 324, 422, 585, 594
AccIII TCCGGA 2 cut(s) 985, 1388
AclWI GGATC 1 cut(s) 194
AcoI YGGCCR 4 cut(s) 631, 750, 1242, 1305
AcsI RAATTY 3 cut(s) 853, 1679, 1912
AcuI CTGAAG 3 cut(s) 556, 1298, 1652
AfaI GTAC 7 cut(s) 330, 365, 470, 773, 872, 1730, 1790
AfiI CCNNNNNNNGG 5 cut(s) 46, 155, 438, 1469, 1868
AflII CTTAAG 1 cut(s) 1919
AgsI TTSAA 6 cut(s) 448, 838, 859, 1177, 1345, 1453
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 7 cut(s) 123, 143, 275, 909, 956, 1867, 1879
AjuI GAANNNNNNNTTGG 4 cut(s) 1037, 1069, 1352, 1384
AluBI AGCT 9 cut(s) 265, 307, 1156, 1312, 1504, 1533, 1924, 1973, 2002
AluI AGCT 9 cut(s) 265, 307, 1156, 1312, 1504, 1533, 1924, 1973, 2002
Alw26I GTCTC 2 cut(s) 1026, 1754
AlwI GGATC 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 2002
Ama87I CYCGRG 1 cut(s) 1981
Aor13HI TCCGGA 2 cut(s) 985, 1388
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 6 cut(s) 50, 262, 371, 520, 743, 1973
ApoI RAATTY 3 cut(s) 853, 1679, 1912
ArsI GACNNNNNNTTYG 4 cut(s) 905, 937, 1664, 1696
Asp700I GAANNNNTTC 1 cut(s) 965
Asp718I GGTACC 1 cut(s) 771
AspLEI GCGC 2 cut(s) 1103, 1891
AspS9I GGNCC 7 cut(s) 17, 127, 147, 279, 280, 451, 1985
AsuC2I CCSGG 2 cut(s) 47, 785
AsuHPI GGTGA 9 cut(s) 133, 154, 181, 497, 679, 1301, 1489, 1786, 1820
AvaI CYCGRG 1 cut(s) 1981
AvaII GGWCC 3 cut(s) 17, 451, 1985
AxyI CCTNAGG 1 cut(s) 29
BaeGI GKGCMC 2 cut(s) 283, 1252
BaeI ACNNNNGTAYC 2 cut(s) 763, 796
BalI TGGCCA 1 cut(s) 752
BanI GGYRCC 6 cut(s) 335, 771, 1057, 1115, 1247, 1816
BanII GRGCYC 1 cut(s) 283
BbvCI CCTCAGC 2 cut(s) 1040, 1500
BbvI GCAGC 6 cut(s) 37, 274, 358, 507, 755, 1960
BccI CCATC 6 cut(s) 31, 1280, 1286, 1552, 1749, 1934
BceAI ACGGC 3 cut(s) 384, 570, 636
BciT130I CCWGG 7 cut(s) 125, 145, 277, 911, 958, 1869, 1881
BciVI GTATCC 1 cut(s) 993
BclI TGATCA 2 cut(s) 1479, 1684
BcnI CCSGG 2 cut(s) 47, 785
BcoDI GTCTC 2 cut(s) 1026, 1754
BfaI CTAG 4 cut(s) 407, 479, 660, 972
BfmI CTRYAG 2 cut(s) 521, 790
BfoI RGCGCY 2 cut(s) 1104, 1892
BfrI CTTAAG 1 cut(s) 1919
BfuAI ACCTGC 2 cut(s) 462, 1291
BfuI GTATCC 1 cut(s) 993
BglI GCCNNNNNGGC 2 cut(s) 758, 1145
BglII AGATCT 1 cut(s) 817
Bme1390I CCNGG 9 cut(s) 47, 125, 145, 277, 785, 911, 958, 1869, 1881
Bme18I GGWCC 3 cut(s) 17, 451, 1985
BmeT110I CYCGRG 1 cut(s) 1981
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 7 cut(s) 17, 127, 147, 279, 280, 451, 1985
BmrFI CCNGG 9 cut(s) 47, 125, 145, 277, 785, 911, 958, 1869, 1881
BmrI ACTGGG 1 cut(s) 1573
BmsI GCATC 2 cut(s) 254, 1801
BmuI ACTGGG 1 cut(s) 1573
BplI GAGNNNNNCTC 2 cut(s) 1390, 1422
BpmI CTGGAG 1 cut(s) 479
Bpu10I CCTNAGC 2 cut(s) 1040, 1500
BpuEI CTTGAG 2 cut(s) 54, 287
BpuMI CCSGG 2 cut(s) 47, 785
BsaAI YACGTR 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 1026
BsaJI CCNNGG 9 cut(s) 45, 276, 322, 747, 909, 1463, 1748, 1868, 1965
BsaWI WCCGGW 2 cut(s) 985, 1388
BsaXI ACNNNNNCTCC 4 cut(s) 452, 482, 1287, 1317
Bsc4I CCNNNNNNNGG 5 cut(s) 46, 155, 438, 1469, 1868
Bse118I RCCGGY 4 cut(s) 194, 338, 1035, 1244
Bse1I ACTGG 1 cut(s) 1568
Bse21I CCTNAGG 1 cut(s) 29
Bse3DI GCAATG 2 cut(s) 951, 1528
BseAI TCCGGA 2 cut(s) 985, 1388
BseBI CCWGG 7 cut(s) 125, 145, 277, 911, 958, 1869, 1881
BseDI CCNNGG 9 cut(s) 45, 276, 322, 747, 909, 1463, 1748, 1868, 1965
BseLI CCNNNNNNNGG 5 cut(s) 46, 155, 438, 1469, 1868
BseMI GCAATG 2 cut(s) 951, 1528
BseMII CTCAG 8 cut(s) 43, 1031, 1155, 1437, 1514, 1533, 1832, 1886
BseNI ACTGG 1 cut(s) 1568
BseRI GAGGAG 3 cut(s) 591, 1202, 1472
BseSI GKGCMC 2 cut(s) 283, 1252
BseX3I CGGCCG 1 cut(s) 1242
BseXI GCAGC 6 cut(s) 37, 274, 358, 507, 755, 1960
BseYI CCCAGC 1 cut(s) 129
Bsh1236I CGCG 4 cut(s) 324, 422, 585, 594
Bsh1285I CGRYCG 1 cut(s) 1245
BshNI GGYRCC 6 cut(s) 335, 771, 1057, 1115, 1247, 1816
BsiEI CGRYCG 1 cut(s) 1245
BsiHKCI CYCGRG 1 cut(s) 1981
BsiWI CGTACG 1 cut(s) 328
BslFI GGGAC 5 cut(s) 215, 409, 1417, 1859, 1885
BslI CCNNNNNNNGG 5 cut(s) 46, 155, 438, 1469, 1868
BsmAI GTCTC 2 cut(s) 1026, 1754
BsmFI GGGAC 5 cut(s) 215, 409, 1417, 1859, 1885
Bso31I GGTCTC 1 cut(s) 1026
BsoBI CYCGRG 1 cut(s) 1981
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 283, 1252
Bsp13I TCCGGA 2 cut(s) 985, 1388
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 9 cut(s) 138, 199, 211, 817, 925, 1266, 1479, 1525, 1684
Bsp19I CCATGG 3 cut(s) 747, 1463, 1965
BspCNI CTCAG 8 cut(s) 42, 1032, 1154, 1438, 1513, 1534, 1833, 1887
BspEI TCCGGA 2 cut(s) 985, 1388
BspFNI CGCG 4 cut(s) 324, 422, 585, 594
BspMAI CTGCAG 1 cut(s) 525
BspMI ACCTGC 2 cut(s) 462, 1291
BspPI GGATC 1 cut(s) 194
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 6 cut(s) 335, 771, 1057, 1115, 1247, 1816
BspTI CTTAAG 1 cut(s) 1919
BspTNI GGTCTC 1 cut(s) 1026
BsrBI CCGCTC 1 cut(s) 627
BsrDI GCAATG 2 cut(s) 951, 1528
BsrFI RCCGGY 4 cut(s) 194, 338, 1035, 1244
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 1 cut(s) 1568
BssAI RCCGGY 4 cut(s) 194, 338, 1035, 1244
BssECI CCNNGG 9 cut(s) 45, 276, 322, 747, 909, 1463, 1748, 1868, 1965
BssMI GATC 9 cut(s) 138, 199, 211, 817, 925, 1266, 1479, 1525, 1684
BssT1I CCWWGG 4 cut(s) 747, 1463, 1748, 1965
Bst2UI CCWGG 7 cut(s) 125, 145, 277, 911, 958, 1869, 1881
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 3 cut(s) 12, 221, 1316
BstAFI CTTAAG 1 cut(s) 1919
BstAPI GCANNNNNTGC 1 cut(s) 1016
BstAUI TGTACA 1 cut(s) 363
BstBAI YACGTR 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 9 cut(s) 29, 1040, 1141, 1446, 1500, 1529, 1542, 1841, 1895
BstDSI CCRYGG 4 cut(s) 322, 747, 1463, 1965
BstFNI CGCG 4 cut(s) 324, 422, 585, 594
BstH2I RGCGCY 2 cut(s) 1104, 1892
BstHHI GCGC 2 cut(s) 1103, 1891
BstKTI GATC 9 cut(s) 141, 202, 214, 820, 928, 1269, 1482, 1528, 1687
BstMAI GTCTC 2 cut(s) 1026, 1754
BstMBI GATC 9 cut(s) 138, 199, 211, 817, 925, 1266, 1479, 1525, 1684
BstMCI CGRYCG 1 cut(s) 1245
BstNI CCWGG 7 cut(s) 125, 145, 277, 911, 958, 1869, 1881
BstSCI CCNGG 9 cut(s) 45, 123, 143, 275, 783, 909, 956, 1867, 1879
BstSFI CTRYAG 2 cut(s) 521, 790
BstSLI GKGCMC 2 cut(s) 283, 1252
BstUI CGCG 4 cut(s) 324, 422, 585, 594
BstV1I GCAGC 6 cut(s) 37, 274, 358, 507, 755, 1960
BstX2I RGATCY 1 cut(s) 817
BstXI CCANNNNNNTGG 1 cut(s) 1755
BstYI RGATCY 1 cut(s) 817
BstZI CGGCCG 1 cut(s) 1242
Bsu36I CCTNAGG 1 cut(s) 29
BsuI GTATCC 1 cut(s) 993
BtgI CCRYGG 4 cut(s) 322, 747, 1463, 1965
BtgZI GCGATG 1 cut(s) 1163
BtrI CACGTC 1 cut(s) 226
BtsIMutI CAGTG 5 cut(s) 1149, 1322, 1495, 1575, 1675
BveI ACCTGC 2 cut(s) 462, 1291
Cac8I GCNNGC 1 cut(s) 412
CaiI CAGNNNCTG 1 cut(s) 2002
CfoI GCGC 2 cut(s) 1103, 1891
Cfr10I RCCGGY 4 cut(s) 194, 338, 1035, 1244
Cfr13I GGNCC 7 cut(s) 17, 127, 147, 279, 280, 451, 1985
Cfr42I CCGCGG 1 cut(s) 325
CseI GACGC 3 cut(s) 411, 600, 1016
Csp6I GTAC 7 cut(s) 329, 364, 469, 772, 871, 1729, 1789
CspCI CAANNNNNGTGG 2 cut(s) 610, 645
CviAII CATG 8 cut(s) 103, 748, 1181, 1262, 1396, 1464, 1675, 1966
CviQI GTAC 7 cut(s) 329, 364, 469, 772, 871, 1729, 1789
DdeI CTNAG 9 cut(s) 29, 1040, 1141, 1446, 1500, 1529, 1542, 1841, 1895
DpnI GATC 9 cut(s) 140, 201, 213, 819, 927, 1268, 1481, 1527, 1686
DpnII GATC 9 cut(s) 138, 199, 211, 817, 925, 1266, 1479, 1525, 1684
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 4 cut(s) 631, 750, 1242, 1305
EagI CGGCCG 1 cut(s) 1242
Eam1104I CTCTTC 3 cut(s) 12, 221, 1316
EarI CTCTTC 3 cut(s) 12, 221, 1316
EclXI CGGCCG 1 cut(s) 1242
Eco130I CCWWGG 4 cut(s) 747, 1463, 1748, 1965
Eco147I AGGCCT 1 cut(s) 716
Eco24I GRGCYC 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 1026
Eco47I GGWCC 3 cut(s) 17, 451, 1985
Eco52I CGGCCG 1 cut(s) 1242
Eco57I CTGAAG 3 cut(s) 556, 1298, 1652
Eco81I CCTNAGG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 1981
EcoO109I RGGNCCY 2 cut(s) 147, 451
EcoRII CCWGG 7 cut(s) 123, 143, 275, 909, 956, 1867, 1879
EcoT14I CCWWGG 4 cut(s) 747, 1463, 1748, 1965
EcoT38I GRGCYC 1 cut(s) 283
ErhI CCWWGG 4 cut(s) 747, 1463, 1748, 1965
FaeI CATG 8 cut(s) 106, 751, 1184, 1265, 1399, 1467, 1678, 1969
FalI AAGNNNNNCTT 4 cut(s) 1352, 1384, 1913, 1945
FaqI GGGAC 5 cut(s) 215, 409, 1417, 1859, 1885
FatI CATG 8 cut(s) 102, 747, 1180, 1261, 1395, 1463, 1674, 1965
FbaI TGATCA 2 cut(s) 1479, 1684
FblI GTMKAC 1 cut(s) 1232
FriOI GRGCYC 1 cut(s) 283
FspBI CTAG 4 cut(s) 407, 479, 660, 972
GlaI GCGC 2 cut(s) 1102, 1890
GsaI CCCAGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 479
HaeII RGCGCY 2 cut(s) 1104, 1892
HgaI GACGC 3 cut(s) 411, 600, 1016
HhaI GCGC 2 cut(s) 1103, 1891
Hin1II CATG 8 cut(s) 106, 751, 1184, 1265, 1399, 1467, 1678, 1969
Hin6I GCGC 2 cut(s) 1101, 1889
HinP1I GCGC 2 cut(s) 1101, 1889
HindIII AAGCTT 1 cut(s) 1154
HphI GGTGA 9 cut(s) 133, 154, 181, 497, 679, 1301, 1489, 1786, 1820
Hpy166II GTNNAC 2 cut(s) 366, 1233
Hpy188III TCNNGA 5 cut(s) 479, 986, 1174, 1389, 1988
Hpy8I GTNNAC 2 cut(s) 366, 1233
Hpy99I CGWCG 2 cut(s) 230, 422
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4IV ACGT 3 cut(s) 225, 331, 417
HpyCH4V TGCA 5 cut(s) 315, 414, 523, 802, 1976
HpyF3I CTNAG 9 cut(s) 29, 1040, 1141, 1446, 1500, 1529, 1542, 1841, 1895
HpySE526I ACGT 3 cut(s) 225, 331, 417
Hsp92II CATG 8 cut(s) 106, 751, 1184, 1265, 1399, 1467, 1678, 1969
HspAI GCGC 2 cut(s) 1101, 1889
Kpn2I TCCGGA 2 cut(s) 985, 1388
KpnI GGTACC 1 cut(s) 775
Ksp22I TGATCA 2 cut(s) 1479, 1684
KspI CCGCGG 1 cut(s) 325
Kzo9I GATC 9 cut(s) 138, 199, 211, 817, 925, 1266, 1479, 1525, 1684
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 5 cut(s) 270, 387, 1459, 1538, 1639
Lsp1109I GCAGC 6 cut(s) 37, 274, 358, 507, 755, 1960
LweI GCATC 2 cut(s) 254, 1801
MaeI CTAG 4 cut(s) 407, 479, 660, 972
MaeII ACGT 3 cut(s) 225, 331, 417
MaeIII GTNAC 3 cut(s) 187, 779, 1670
MalI GATC 9 cut(s) 140, 201, 213, 819, 927, 1268, 1481, 1527, 1686
MbiI CCGCTC 1 cut(s) 627
MboI GATC 9 cut(s) 138, 199, 211, 817, 925, 1266, 1479, 1525, 1684
MboII GAAGA 7 cut(s) 208, 211, 511, 562, 889, 1333, 1372
MflI RGATCY 1 cut(s) 817
MhlI GDGCHC 2 cut(s) 283, 1252
MlsI TGGCCA 1 cut(s) 752
MluCI AATT 4 cut(s) 853, 999, 1679, 1912
MluNI TGGCCA 1 cut(s) 752
MlyI GAGTC 5 cut(s) 908, 1035, 1399, 1841, 1867
MmeI TCCRAC 1 cut(s) 1056
Mox20I TGGCCA 1 cut(s) 752
MroI TCCGGA 2 cut(s) 985, 1388
MroXI GAANNNNTTC 1 cut(s) 965
MscI TGGCCA 1 cut(s) 752
MseI TTAA 3 cut(s) 1197, 1650, 1920
MslI CAYNNNNRTG 1 cut(s) 1964
Msp20I TGGCCA 1 cut(s) 752
MspA1I CMGCKG 1 cut(s) 324
MspCI CTTAAG 1 cut(s) 1919
MspR9I CCNGG 9 cut(s) 47, 125, 145, 277, 785, 911, 958, 1869, 1881
MvaI CCWGG 7 cut(s) 125, 145, 277, 911, 958, 1869, 1881
MvnI CGCG 4 cut(s) 324, 422, 585, 594
NciI CCSGG 2 cut(s) 47, 785
NcoI CCATGG 3 cut(s) 747, 1463, 1965
NdeII GATC 9 cut(s) 138, 199, 211, 817, 925, 1266, 1479, 1525, 1684
NlaIII CATG 8 cut(s) 106, 751, 1184, 1265, 1399, 1467, 1678, 1969
NmeAIII GCCGAG 2 cut(s) 457, 1333
NmuCI GTSAC 3 cut(s) 187, 779, 1670
PaqCI CACCTGC 1 cut(s) 1291
PceI AGGCCT 1 cut(s) 716
PciSI GCTCTTC 1 cut(s) 12
PdmI GAANNNNTTC 1 cut(s) 965
PfeI GAWTC 9 cut(s) 463, 502, 795, 977, 1603, 1627, 1777, 1837, 1948
Pfl23II CGTACG 1 cut(s) 328
PleI GAGTC 5 cut(s) 908, 1034, 1399, 1841, 1867
PpsI GAGTC 5 cut(s) 908, 1034, 1399, 1841, 1867
Ppu21I YACGTR 1 cut(s) 332
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 7 cut(s) 123, 143, 275, 909, 956, 1867, 1879
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 7 cut(s) 123, 143, 275, 909, 956, 1867, 1879
PspLI CGTACG 1 cut(s) 328
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 7 cut(s) 17, 127, 147, 279, 280, 451, 1985
PspPPI RGGWCCY 1 cut(s) 451
PstI CTGCAG 1 cut(s) 525
PstNI CAGNNNCTG 1 cut(s) 2002
PsuI RGATCY 1 cut(s) 817
RsaI GTAC 7 cut(s) 330, 365, 470, 773, 872, 1730, 1790
RsaNI GTAC 7 cut(s) 329, 364, 469, 772, 871, 1729, 1789
RseI CAYNNNNRTG 1 cut(s) 1964
SacII CCGCGG 1 cut(s) 325
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 1197, 1650, 1920
Sau3AI GATC 9 cut(s) 138, 199, 211, 817, 925, 1266, 1479, 1525, 1684
Sau96I GGNCC 7 cut(s) 17, 127, 147, 279, 280, 451, 1985
SchI GAGTC 5 cut(s) 908, 1035, 1399, 1841, 1867
ScrFI CCNGG 9 cut(s) 47, 125, 145, 277, 785, 911, 958, 1869, 1881
SduI GDGCHC 2 cut(s) 283, 1252
SfaNI GCATC 2 cut(s) 254, 1801
SfcI CTRYAG 2 cut(s) 521, 790
Sfr303I CCGCGG 1 cut(s) 325
SgrAI CRCCGGYG 1 cut(s) 194
SgrBI CCGCGG 1 cut(s) 325
SinI GGWCC 3 cut(s) 17, 451, 1985
SmiMI CAYNNNNRTG 1 cut(s) 1964
SmlI CTYRAG 3 cut(s) 69, 302, 1919
SmoI CTYRAG 3 cut(s) 69, 302, 1919
Sse9I AATT 4 cut(s) 853, 999, 1679, 1912
SseBI AGGCCT 1 cut(s) 716
SspMI CTAG 4 cut(s) 407, 479, 660, 972
StuI AGGCCT 1 cut(s) 716
StyD4I CCNGG 9 cut(s) 45, 123, 143, 275, 783, 909, 956, 1867, 1879
StyI CCWWGG 4 cut(s) 747, 1463, 1748, 1965
TaaI ACNGT 1 cut(s) 173
TaiI ACGT 3 cut(s) 228, 334, 420
TaqI TCGA 4 cut(s) 96, 210, 928, 1850
TaqII GACCGA 1 cut(s) 5
TasI AATT 4 cut(s) 853, 999, 1679, 1912
TatI WGTACW 3 cut(s) 363, 870, 1788
TauI GCSGC 7 cut(s) 327, 560, 588, 597, 600, 893, 1244
TfiI GAWTC 9 cut(s) 463, 502, 795, 977, 1603, 1627, 1777, 1837, 1948
Tru1I TTAA 3 cut(s) 1197, 1650, 1920
Tru9I TTAA 3 cut(s) 1197, 1650, 1920
TscAI CASTG 5 cut(s) 1149, 1322, 1495, 1582, 1675
TseFI GTSAC 3 cut(s) 187, 779, 1670
TseI GCWGC 6 cut(s) 50, 262, 371, 520, 743, 1973
Tsp45I GTSAC 3 cut(s) 187, 779, 1670
TspDTI ATGAA 4 cut(s) 82, 1008, 1166, 1373
TspGWI ACGGA 1 cut(s) 1746
TspRI CASTG 5 cut(s) 1149, 1322, 1495, 1582, 1675
Vha464I CTTAAG 1 cut(s) 1919
VpaK11BI GGWCC 3 cut(s) 17, 451, 1985
XapI RAATTY 3 cut(s) 853, 1679, 1912
XbaI TCTAGA 1 cut(s) 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmiI GTMKAC 1 cut(s) 1232
XmnI GAANNNNTTC 1 cut(s) 965
XspI CTAG 4 cut(s) 407, 479, 660, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.