Rh7AG077100

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000255
Physical Location & Seq
Forward (+)
5513663 .. 5515925
2263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG077100.1

Sequence Viewer

Length: 2016 bp
ATGGCTCTTCTTCTCGGTCCTCCATCCCTCAGGCAATCTCCAACCCCGGCGGCCCAACAACCACAGGCCCAAGCCCCCTCCGGCGACCCATTCATCGACCTCATGGTCGCCGATTACAACAACCTGGCCCAGCCTCCGATCACCAGGCCCCAAATGGGCTTCACCGAGAACGGCTCAGCCACATTCGTCACCACCGGCGATCCTTGCCTCGATCTCTTCTTCCACGTCGTCCCCAACACTCCGGCGTCGTATCTGAACCAGCAGCTCCCTCTGGCCTGGGCCCACAACGCCCTCACCACCCTCAAGCTCATCTGCAACCTCCGCGGCGTACGTGGCACCGGCAAGTCTGACAAAGAAGGATTCTACACGGCGGCGTTTTGGCTCCACAAGAACCACCCCAAAACCCTAGCCTGCAACGTCGCGTCCCTCGCCGAGTTCGGGTATTTCAAGGACCTGCCGGAGATTCTGTACCGCCTTCTAGAAGGTGAGGATGTGAGGAAGAAGCTGAAGTCCGAGTGGCTGCAGAGGAAGTCCGGCAGGGGTAGGGTTCGGACTGCGGCGGTTCCATTCTCCAGAGGAGGTCGCGGCGGCGGCGGTGCTAAAAAGAGAACCAAGAGCGGTGGCCGGAGAGGAAACAACAGCCGTGTGGCTAGGGAGGTGAGGGTGCTGAACTCAATGGAGAGGACAAAATCGGAAAAGGAAAAGGCCTCTGCTTTGCGGAAGGAGAAGTTCGCAGCCATGGCCAAGAAGGCTGTTGAGAGGTACCAGCGTGACCCGGACTACAGATTCTTGCACGAACGGGTTTCGGATCTTTTCGCAGAGTGCTTGAAATCGGATATGGAGAATTTGAAGTCCAATCAGTACAAGAAGATTAGCCTTGCGGCGAAATGGTGTCCTTCTCTGGACTCGTCTTTTGATCGAGCCACACTGCTCTGTGAGAGCATTGCCAGGAAGGTTTTCACCCGGGAATCGCATCCGGAATATGAAGGAATTGAGGATGCACATTATGCTTATAGAGTCCGAGACCGGCTGAGGAAGGATGTGTTGGTGCCATTGAGGATAGTGTTGGAGTTGCCGGAGGTTTATATGGGTGCCAATCTGTGGGGTGCCATTCCTTACAACAGAGTGGCCTCTGTGGCGATGAAGCTCTACAAGAAGAAGTTCTTGAAGCATGATGAGGAGAGGTTTAAGAAGTATTTGGAGGATGTCAAGGCCGGGAAGTCTACTATTGCGGCCGGTGCTCTGCTTCCGCATGAGATCATAGCCTCTCTGAATGATGGGGATGGAGGGCAGGTGGCCGAGCTTCAGTGGAAGAGAGTGGTGGATGACTTGTTGAAGGAGGGCACGATGAAGAACTGCTTGGCTGTGTGTGATGTGTCCGGAAGCATGGATGGGACTCCTATGGATGTGTGTGTTGCTTTGGGAATGTTGGTGGCTGAGTTGAATGAGGAGCCATGGAAAGGGAAGGTGATCACATTCAGTGCCAATCCTCAGCTTCACTTGATACAAGGCAATGATCTAAGGTCCAAGTCTGAGTTTGTGAAGCGAATGGACTGGGGAGGCAACACTGATTTTCAGAAGGTGTTTGATTTGATCCTCCAAGTGGCTGTGAAGGGGAATCTGAAGCCGGAGCAAATGATTAAGAGGGTGTTTGTTTTCAGTGACATGGAATTTGATCAGGCTTCGGGTTATGGTTATGGTTATGGAGGATATGGATATGGGCGGTTCGGAAGTAATGATGTTCCAAGGGGATGGGAAACTGATTATGAGGTGATTCAGAGGAAGTACAGGGAGAAAGGGTATGGTGATGCGGTGCCACAGATAGTGTTTTGGAATCTGAGGGACTCGAAGGCTACTCCCGTGCCTGGGACTCAACCAGGAGTGGCGCTACTGAGTGGCTTCTCCAAGAATTTGCTCAAGCTCTTCTTGGATAATGATGGGGAGATTCGCCCTGACACAACCATGGAAGCAGCAATCTCGGGTCCAGAGTATCAGAAGCTGGTTGTGCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

671

Amino Acids

75.12

Weight (kDa)

9.16

Isoelectric Point (pI)

31.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 55 - 450 7.4e-138 Domain of unknown function (DUF2828)
DUF7788 PF25043 452 - 650 1.6e-78 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1282
AasI GACNNNNNNGTC 1 cut(s) 104
Acc36I ACCTGC 2 cut(s) 462, 1282
Acc65I GGTACC 1 cut(s) 762
AccB1I GGYRCC 6 cut(s) 335, 762, 1048, 1091, 1106, 1813
AccB7I CCANNNNNTGG 1 cut(s) 1101
AccBSI CCGCTC 1 cut(s) 618
AccI GTMKAC 1 cut(s) 1223
AccII CGCG 3 cut(s) 324, 422, 585
AccIII TCCGGA 2 cut(s) 976, 1379
AclWI GGATC 3 cut(s) 194, 816, 1588
AcoI YGGCCR 4 cut(s) 622, 741, 1233, 1296
AcsI RAATTY 3 cut(s) 844, 1670, 1909
AcuI CTGAAG 3 cut(s) 527, 1289, 1643
AcyI GRCGYC 1 cut(s) 245
AfaI GTAC 5 cut(s) 330, 470, 764, 863, 1787
AfiI CCNNNNNNNGG 7 cut(s) 155, 438, 1101, 1460, 1603, 1865, 1866
AgsI TTSAA 6 cut(s) 448, 829, 850, 1168, 1336, 1444
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 6 cut(s) 123, 143, 275, 947, 1864, 1876
AjuI GAANNNNNNNTTGG 4 cut(s) 1028, 1060, 1343, 1375
AluBI AGCT 8 cut(s) 265, 307, 505, 1147, 1303, 1495, 1921, 1999
AluI AGCT 8 cut(s) 265, 307, 505, 1147, 1303, 1495, 1921, 1999
Alw21I GWGCWC 1 cut(s) 1243
Alw26I GTCTC 1 cut(s) 1017
AlwI GGATC 3 cut(s) 194, 816, 1588
AlwNI CAGNNNCTG 1 cut(s) 1999
Ama87I CYCGRG 2 cut(s) 963, 1978
Aor13HI TCCGGA 2 cut(s) 976, 1379
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 4 cut(s) 262, 520, 734, 1970
ApoI RAATTY 3 cut(s) 844, 1670, 1909
ArsI GACNNNNNNTTYG 4 cut(s) 896, 928, 1655, 1687
Asp700I GAANNNNTTC 2 cut(s) 956, 1160
Asp718I GGTACC 1 cut(s) 762
AspLEI GCGC 1 cut(s) 1888
AsuC2I CCSGG 5 cut(s) 47, 776, 964, 965, 1216
AvaI CYCGRG 2 cut(s) 963, 1978
AvaII GGWCC 4 cut(s) 17, 451, 1524, 1982
AxyI CCTNAGG 1 cut(s) 29
BaeGI GKGCMC 2 cut(s) 283, 1346
BaeI ACNNNNGTAYC 2 cut(s) 754, 787
BalI TGGCCA 1 cut(s) 743
BanI GGYRCC 6 cut(s) 335, 762, 1048, 1091, 1106, 1813
BanII GRGCYC 1 cut(s) 283
Bbv12I GWGCWC 1 cut(s) 1243
BbvCI CCTCAGC 2 cut(s) 1031, 1491
BbvI GCAGC 4 cut(s) 274, 507, 746, 1982
BccI CCATC 6 cut(s) 31, 1271, 1277, 1385, 1746, 1931
BceAI ACGGC 3 cut(s) 187, 384, 627
BcgI CGANNNNNNTGC 2 cut(s) 1959, 1993
BciT130I CCWGG 6 cut(s) 125, 145, 277, 949, 1866, 1878
BclI TGATCA 2 cut(s) 1470, 1675
BcnI CCSGG 5 cut(s) 47, 776, 964, 965, 1216
BcoDI GTCTC 1 cut(s) 1017
BfaI CTAG 3 cut(s) 407, 479, 651
BfmI CTRYAG 2 cut(s) 521, 781
BfoI RGCGCY 1 cut(s) 1889
BfuAI ACCTGC 2 cut(s) 462, 1282
BglI GCCNNNNNGGC 2 cut(s) 749, 1136
BlpI GCTNAGC 1 cut(s) 175
Bme18I GGWCC 4 cut(s) 17, 451, 1524, 1982
BmeT110I CYCGRG 2 cut(s) 963, 1978
BmgBI CACGTC 1 cut(s) 226
BmrI ACTGGG 1 cut(s) 1564
BmsI GCATC 3 cut(s) 982, 988, 1798
BmuI ACTGGG 1 cut(s) 1564
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BpmI CTGGAG 1 cut(s) 556
Bpu10I CCTNAGC 2 cut(s) 1031, 1491
Bpu1102I GCTNAGC 1 cut(s) 175
BpuEI CTTGAG 2 cut(s) 287, 1901
BpuMI CCSGG 5 cut(s) 47, 776, 964, 965, 1216
BsaAI YACGTR 1 cut(s) 332
BsaHI GRCGYC 1 cut(s) 245
BsaI GGTCTC 1 cut(s) 1017
BsaJI CCNNGG 9 cut(s) 45, 276, 322, 738, 963, 1454, 1745, 1865, 1962
BsaWI WCCGGW 2 cut(s) 976, 1379
BsaXI ACNNNNNCTCC 6 cut(s) 452, 482, 1278, 1308, 1784, 1814
Bsc4I CCNNNNNNNGG 7 cut(s) 155, 438, 1101, 1460, 1603, 1865, 1866
Bse118I RCCGGY 4 cut(s) 194, 338, 1026, 1235
Bse1I ACTGG 1 cut(s) 1559
Bse21I CCTNAGG 1 cut(s) 29
Bse3DI GCAATG 2 cut(s) 942, 1519
BseAI TCCGGA 2 cut(s) 976, 1379
BseBI CCWGG 6 cut(s) 125, 145, 277, 949, 1866, 1878
BseDI CCNNGG 9 cut(s) 45, 276, 322, 738, 963, 1454, 1745, 1865, 1962
BseLI CCNNNNNNNGG 7 cut(s) 155, 438, 1101, 1460, 1603, 1865, 1866
BseMI GCAATG 2 cut(s) 942, 1519
BseMII CTCAG 8 cut(s) 43, 189, 1022, 1428, 1505, 1524, 1829, 1883
BseNI ACTGG 1 cut(s) 1559
BseRI GAGGAG 3 cut(s) 591, 1193, 1463
BseSI GKGCMC 2 cut(s) 283, 1346
BseX3I CGGCCG 1 cut(s) 1233
BseXI GCAGC 4 cut(s) 274, 507, 746, 1982
BseYI CCCAGC 1 cut(s) 129
Bsh1236I CGCG 3 cut(s) 324, 422, 585
Bsh1285I CGRYCG 1 cut(s) 1236
BshNI GGYRCC 6 cut(s) 335, 762, 1048, 1091, 1106, 1813
BsiEI CGRYCG 1 cut(s) 1236
BsiHKAI GWGCWC 1 cut(s) 1243
BsiHKCI CYCGRG 2 cut(s) 963, 1978
BsiWI CGTACG 1 cut(s) 328
BslFI GGGAC 5 cut(s) 215, 409, 1408, 1856, 1882
BslI CCNNNNNNNGG 7 cut(s) 155, 438, 1101, 1460, 1603, 1865, 1866
BsmAI GTCTC 1 cut(s) 1017
BsmFI GGGAC 5 cut(s) 215, 409, 1408, 1856, 1882
Bso31I GGTCTC 1 cut(s) 1017
BsoBI CYCGRG 2 cut(s) 963, 1978
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 3 cut(s) 283, 1243, 1346
Bsp13I TCCGGA 2 cut(s) 976, 1379
Bsp1720I GCTNAGC 1 cut(s) 175
Bsp19I CCATGG 3 cut(s) 738, 1454, 1962
BspCNI CTCAG 8 cut(s) 42, 188, 1023, 1429, 1504, 1525, 1830, 1884
BspEI TCCGGA 2 cut(s) 976, 1379
BspFNI CGCG 3 cut(s) 324, 422, 585
BspMAI CTGCAG 1 cut(s) 525
BspMI ACCTGC 2 cut(s) 462, 1282
BspPI GGATC 3 cut(s) 194, 816, 1588
BspQI GCTCTTC 2 cut(s) 12, 1928
BspT107I GGYRCC 6 cut(s) 335, 762, 1048, 1091, 1106, 1813
BspTNI GGTCTC 1 cut(s) 1017
BsrBI CCGCTC 1 cut(s) 618
BsrDI GCAATG 2 cut(s) 942, 1519
BsrFI RCCGGY 4 cut(s) 194, 338, 1026, 1235
BsrI ACTGG 1 cut(s) 1559
BssAI RCCGGY 4 cut(s) 194, 338, 1026, 1235
BssECI CCNNGG 9 cut(s) 45, 276, 322, 738, 963, 1454, 1745, 1865, 1962
BssNI GRCGYC 1 cut(s) 245
BssT1I CCWWGG 4 cut(s) 738, 1454, 1745, 1962
Bst2UI CCWGG 6 cut(s) 125, 145, 277, 949, 1866, 1878
Bst6I CTCTTC 4 cut(s) 12, 221, 1307, 1928
BstACI GRCGYC 1 cut(s) 245
BstAPI GCANNNNNTGC 1 cut(s) 1007
BstBAI YACGTR 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 9 cut(s) 29, 175, 1031, 1437, 1491, 1520, 1533, 1838, 1892
BstDSI CCRYGG 4 cut(s) 322, 738, 1454, 1962
BstFNI CGCG 3 cut(s) 324, 422, 585
BstH2I RGCGCY 1 cut(s) 1889
BstHHI GCGC 1 cut(s) 1888
BstMAI GTCTC 1 cut(s) 1017
BstMCI CGRYCG 1 cut(s) 1236
BstNI CCWGG 6 cut(s) 125, 145, 277, 949, 1866, 1878
BstSFI CTRYAG 2 cut(s) 521, 781
BstSLI GKGCMC 2 cut(s) 283, 1346
BstUI CGCG 3 cut(s) 324, 422, 585
BstV1I GCAGC 4 cut(s) 274, 507, 746, 1982
BstX2I RGATCY 1 cut(s) 808
BstXI CCANNNNNNTGG 1 cut(s) 1752
BstYI RGATCY 1 cut(s) 808
BstZI CGGCCG 1 cut(s) 1233
Bsu36I CCTNAGG 1 cut(s) 29
BtgI CCRYGG 4 cut(s) 322, 738, 1454, 1962
BtgZI GCGATG 1 cut(s) 1154
BtrI CACGTC 1 cut(s) 226
BtsI GCAGTG 1 cut(s) 926
BtsIMutI CAGTG 5 cut(s) 926, 1313, 1486, 1566, 1666
BveI ACCTGC 2 cut(s) 462, 1282
Cac8I GCNNGC 1 cut(s) 412
CaiI CAGNNNCTG 1 cut(s) 1999
CfoI GCGC 1 cut(s) 1888
Cfr10I RCCGGY 4 cut(s) 194, 338, 1026, 1235
Cfr42I CCGCGG 1 cut(s) 325
Cfr9I CCCGGG 1 cut(s) 963
CseI GACGC 2 cut(s) 234, 411
Csp6I GTAC 5 cut(s) 329, 469, 763, 862, 1786
CspCI CAANNNNNGTGG 2 cut(s) 601, 636
CviAII CATG 8 cut(s) 103, 739, 1172, 1253, 1387, 1455, 1666, 1963
CviQI GTAC 5 cut(s) 329, 469, 763, 862, 1786
DdeI CTNAG 9 cut(s) 29, 175, 1031, 1437, 1491, 1520, 1533, 1838, 1892
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
EaeI YGGCCR 4 cut(s) 622, 741, 1233, 1296
EagI CGGCCG 1 cut(s) 1233
Eam1104I CTCTTC 4 cut(s) 12, 221, 1307, 1928
EarI CTCTTC 4 cut(s) 12, 221, 1307, 1928
EclXI CGGCCG 1 cut(s) 1233
Eco130I CCWWGG 4 cut(s) 738, 1454, 1745, 1962
Eco147I AGGCCT 1 cut(s) 707
Eco24I GRGCYC 1 cut(s) 283
Eco31I GGTCTC 1 cut(s) 1017
Eco47I GGWCC 4 cut(s) 17, 451, 1524, 1982
Eco52I CGGCCG 1 cut(s) 1233
Eco57I CTGAAG 3 cut(s) 527, 1289, 1643
Eco81I CCTNAGG 1 cut(s) 29
Eco88I CYCGRG 2 cut(s) 963, 1978
EcoO109I RGGNCCY 2 cut(s) 147, 451
EcoRII CCWGG 6 cut(s) 123, 143, 275, 947, 1864, 1876
EcoT14I CCWWGG 4 cut(s) 738, 1454, 1745, 1962
EcoT38I GRGCYC 1 cut(s) 283
ErhI CCWWGG 4 cut(s) 738, 1454, 1745, 1962
FaeI CATG 8 cut(s) 106, 742, 1175, 1256, 1390, 1458, 1669, 1966
FalI AAGNNNNNCTT 6 cut(s) 1148, 1180, 1343, 1375, 1910, 1942
FaqI GGGAC 5 cut(s) 215, 409, 1408, 1856, 1882
FatI CATG 8 cut(s) 102, 738, 1171, 1252, 1386, 1454, 1665, 1962
FbaI TGATCA 2 cut(s) 1470, 1675
FblI GTMKAC 1 cut(s) 1223
FriOI GRGCYC 1 cut(s) 283
FspBI CTAG 3 cut(s) 407, 479, 651
GlaI GCGC 1 cut(s) 1887
GsaI CCCAGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 556
HaeII RGCGCY 1 cut(s) 1889
HgaI GACGC 2 cut(s) 234, 411
HhaI GCGC 1 cut(s) 1888
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 8 cut(s) 106, 742, 1175, 1256, 1390, 1458, 1669, 1966
Hin6I GCGC 1 cut(s) 1886
HinP1I GCGC 1 cut(s) 1886
Hpy166II GTNNAC 1 cut(s) 1224
Hpy188III TCNNGA 7 cut(s) 479, 573, 902, 977, 1165, 1380, 1985
Hpy8I GTNNAC 1 cut(s) 1224
Hpy99I CGWCG 3 cut(s) 230, 250, 422
HpyCH4IV ACGT 3 cut(s) 225, 331, 417
HpyCH4V TGCA 5 cut(s) 315, 414, 523, 793, 1001
HpyF3I CTNAG 9 cut(s) 29, 175, 1031, 1437, 1491, 1520, 1533, 1838, 1892
HpySE526I ACGT 3 cut(s) 225, 331, 417
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 8 cut(s) 106, 742, 1175, 1256, 1390, 1458, 1669, 1966
HspAI GCGC 1 cut(s) 1886
Kpn2I TCCGGA 2 cut(s) 976, 1379
KpnI GGTACC 1 cut(s) 766
Ksp22I TGATCA 2 cut(s) 1470, 1675
KspI CCGCGG 1 cut(s) 325
LguI GCTCTTC 2 cut(s) 12, 1928
LmnI GCTCC 4 cut(s) 270, 387, 1450, 1630
Lsp1109I GCAGC 4 cut(s) 274, 507, 746, 1982
LweI GCATC 3 cut(s) 982, 988, 1798
MaeI CTAG 3 cut(s) 407, 479, 651
MaeII ACGT 3 cut(s) 225, 331, 417
MaeIII GTNAC 3 cut(s) 187, 770, 1661
MbiI CCGCTC 1 cut(s) 618
MboII GAAGA 8 cut(s) 208, 211, 511, 880, 1168, 1324, 1363, 1915
MflI RGATCY 1 cut(s) 808
MhlI GDGCHC 3 cut(s) 283, 1243, 1346
MlsI TGGCCA 1 cut(s) 743
MluCI AATT 4 cut(s) 844, 990, 1670, 1909
MluNI TGGCCA 1 cut(s) 743
MlyI GAGTC 5 cut(s) 899, 1026, 1390, 1838, 1864
MmeI TCCRAC 2 cut(s) 65, 1047
Mox20I TGGCCA 1 cut(s) 743
MroI TCCGGA 2 cut(s) 976, 1379
MroXI GAANNNNTTC 2 cut(s) 956, 1160
MscI TGGCCA 1 cut(s) 743
MseI TTAA 2 cut(s) 1188, 1641
MslI CAYNNNNRTG 1 cut(s) 1961
Msp20I TGGCCA 1 cut(s) 743
MspA1I CMGCKG 1 cut(s) 324
MvaI CCWGG 6 cut(s) 125, 145, 277, 949, 1866, 1878
MvnI CGCG 3 cut(s) 324, 422, 585
NciI CCSGG 5 cut(s) 47, 776, 964, 965, 1216
NcoI CCATGG 3 cut(s) 738, 1454, 1962
NlaIII CATG 8 cut(s) 106, 742, 1175, 1256, 1390, 1458, 1669, 1966
NmeAIII GCCGAG 2 cut(s) 457, 1324
NmuCI GTSAC 3 cut(s) 187, 770, 1661
PaqCI CACCTGC 1 cut(s) 1282
PceI AGGCCT 1 cut(s) 707
PciSI GCTCTTC 2 cut(s) 12, 1928
PdmI GAANNNNTTC 2 cut(s) 956, 1160
PfeI GAWTC 8 cut(s) 360, 463, 786, 968, 1618, 1774, 1834, 1945
Pfl23II CGTACG 1 cut(s) 328
PflMI CCANNNNNTGG 1 cut(s) 1101
PleI GAGTC 5 cut(s) 899, 1025, 1390, 1838, 1864
PpsI GAGTC 5 cut(s) 899, 1025, 1390, 1838, 1864
Ppu21I YACGTR 1 cut(s) 332
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 6 cut(s) 123, 143, 275, 947, 1864, 1876
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 6 cut(s) 123, 143, 275, 947, 1864, 1876
PspLI CGTACG 1 cut(s) 328
PspOMI GGGCCC 1 cut(s) 279
PspPPI RGGWCCY 1 cut(s) 451
PstI CTGCAG 1 cut(s) 525
PstNI CAGNNNCTG 1 cut(s) 1999
PsuI RGATCY 1 cut(s) 808
RsaI GTAC 5 cut(s) 330, 470, 764, 863, 1787
RsaNI GTAC 5 cut(s) 329, 469, 763, 862, 1786
RseI CAYNNNNRTG 1 cut(s) 1961
SacII CCGCGG 1 cut(s) 325
SapI GCTCTTC 2 cut(s) 12, 1928
SaqAI TTAA 2 cut(s) 1188, 1641
SchI GAGTC 5 cut(s) 899, 1026, 1390, 1838, 1864
SduI GDGCHC 3 cut(s) 283, 1243, 1346
SfaNI GCATC 3 cut(s) 982, 988, 1798
SfcI CTRYAG 2 cut(s) 521, 781
Sfr303I CCGCGG 1 cut(s) 325
SgrAI CRCCGGYG 1 cut(s) 194
SgrBI CCGCGG 1 cut(s) 325
SinI GGWCC 4 cut(s) 17, 451, 1524, 1982
SmaI CCCGGG 1 cut(s) 965
SmiMI CAYNNNNRTG 1 cut(s) 1961
SmlI CTYRAG 2 cut(s) 302, 1916
SmoI CTYRAG 2 cut(s) 302, 1916
Sse9I AATT 4 cut(s) 844, 990, 1670, 1909
SseBI AGGCCT 1 cut(s) 707
SspMI CTAG 3 cut(s) 407, 479, 651
StuI AGGCCT 1 cut(s) 707
StyI CCWWGG 4 cut(s) 738, 1454, 1745, 1962
TaiI ACGT 3 cut(s) 228, 334, 420
TaqI TCGA 4 cut(s) 96, 210, 919, 1847
TaqII GACCGA 1 cut(s) 5
TasI AATT 4 cut(s) 844, 990, 1670, 1909
TatI WGTACW 2 cut(s) 861, 1785
TauI GCSGC 9 cut(s) 53, 327, 374, 560, 588, 591, 594, 884, 1235
TfiI GAWTC 8 cut(s) 360, 463, 786, 968, 1618, 1774, 1834, 1945
Tru1I TTAA 2 cut(s) 1188, 1641
Tru9I TTAA 2 cut(s) 1188, 1641
TscAI CASTG 5 cut(s) 933, 1313, 1486, 1573, 1666
TseFI GTSAC 3 cut(s) 187, 770, 1661
TseI GCWGC 4 cut(s) 262, 520, 734, 1970
Tsp45I GTSAC 3 cut(s) 187, 770, 1661
TspDTI ATGAA 4 cut(s) 82, 999, 1157, 1364
TspMI CCCGGG 1 cut(s) 963
TspRI CASTG 5 cut(s) 933, 1313, 1486, 1573, 1666
Van91I CCANNNNNTGG 1 cut(s) 1101
VpaK11BI GGWCC 4 cut(s) 17, 451, 1524, 1982
XapI RAATTY 3 cut(s) 844, 1670, 1909
XbaI TCTAGA 1 cut(s) 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 151
XmaI CCCGGG 1 cut(s) 963
XmiI GTMKAC 1 cut(s) 1223
XmnI GAANNNNTTC 2 cut(s) 956, 1160
XspI CTAG 3 cut(s) 407, 479, 651
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.