FvH4_5g20031

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000255
Physical Location & Seq
Reverse (-)
11819119 .. 11819592
474 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20031.t1

Sequence Viewer

Length: 474 bp
ATGTCAGCTCCAAAACTTCTTCTTGGTCCACCCAAACCATCAAACACCACCACCAACACCGCAACTAAACCTCCGATGGGTCGCACCGAGAAATCCTCCGCCACCTACCTCTCCTCCGGCAACCCTTGCCTCGACCTCTTCTTCCACATCGTACCCGACACCCCCTCCTCTTACATCAACGAACAACTCCCAAAGTCATGGGCTCACAACGCCCTAACTACCCTCAAGCTCATCTGCAACCTCCGTGGCGTCCGCGGCACCGGAAAGTCTGACAAAGAAGACTTCTTCACGGCAGCTTTTTGGCTCCACAACAACCACCCAAAAACCCTAGCCTGCAACCTCGCCTCTTTCGCCTCTTTCGGGTGCTTCAAAGACCTCCCCGAGATTCTCTTCCGCCTTATGGAAGGCCAAGACATAAGAAAGAACCGTAAGGCCGAGTGGTCCATGAAAAAAGAAAATCTCTGGCCGCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

158

Amino Acids

17.58

Weight (kDa)

9.39

Isoelectric Point (pI)

33.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 29 - 149 1.5e-43 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccII CGCG 1 cut(s) 255
AciI CCGC 6 cut(s) 60, 99, 253, 255, 394, 467
AcoI YGGCCR 1 cut(s) 464
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 3 cut(s) 77, 360, 400
AgsI TTSAA 1 cut(s) 370
AluBI AGCT 3 cut(s) 8, 229, 296
AluI AGCT 3 cut(s) 8, 229, 296
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 3 cut(s) 406, 432, 464
ApeKI GCWGC 1 cut(s) 293
AspS9I GGNCC 2 cut(s) 26, 441
AvaI CYCGRG 1 cut(s) 380
AvaII GGWCC 2 cut(s) 26, 441
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 305
BccI CCATC 2 cut(s) 46, 70
BceAI ACGGC 2 cut(s) 306, 454
BfaI CTAG 1 cut(s) 329
BisI GCNGC 3 cut(s) 256, 294, 467
BlsI GCNGC 3 cut(s) 257, 295, 468
Bme18I GGWCC 2 cut(s) 26, 441
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 26, 441
BmiI GGNNCC 2 cut(s) 259, 305
BpiI GAAGAC 1 cut(s) 285
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BpuEI CTTGAG 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 244, 253
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 6 cut(s) 55, 85, 98, 128, 149, 179
Bsc4I CCNNNNNNNGG 3 cut(s) 77, 360, 400
BseDI CCNNGG 2 cut(s) 244, 253
BseLI CCNNNNNNNGG 3 cut(s) 77, 360, 400
BseRI GAGGAG 2 cut(s) 103, 157
BseXI GCAGC 1 cut(s) 305
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 3 cut(s) 408, 434, 466
BshNI GGYRCC 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 2 cut(s) 117, 261
BslI CCNNNNNNNGG 3 cut(s) 77, 360, 400
BsnI GGCC 3 cut(s) 408, 434, 466
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 1 cut(s) 205
BspACI CCGC 6 cut(s) 60, 99, 253, 255, 394, 467
BspANI GGCC 3 cut(s) 408, 434, 466
BspFNI CGCG 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 259, 305
BspT107I GGYRCC 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 244, 253
BssNI GRCGYC 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 2 cut(s) 143, 395
BstACI GRCGYC 1 cut(s) 249
BstAPI GCANNNNNTGC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 334
BstDSI CCRYGG 2 cut(s) 244, 253
BstFNI CGCG 1 cut(s) 255
BstMWI GCNNNNNNNGC 4 cut(s) 126, 209, 255, 350
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 1 cut(s) 305
BstV2I GAAGAC 1 cut(s) 285
BstXI CCANNNNNNTGG 1 cut(s) 198
BsuRI GGCC 3 cut(s) 408, 434, 466
BtgI CCRYGG 2 cut(s) 244, 253
Cac8I GCNNGC 1 cut(s) 334
Cfr13I GGNCC 2 cut(s) 26, 441
Cfr42I CCGCGG 1 cut(s) 256
CseI GACGC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 152
CspCI CAANNNNNGTGG 2 cut(s) 226, 261
CviAII CATG 2 cut(s) 198, 445
CviJI RGCY 9 cut(s) 8, 203, 229, 296, 304, 332, 408, 434, 466
CviKI_1 RGCY 9 cut(s) 8, 203, 229, 296, 304, 332, 408, 434, 466
CviQI GTAC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 464
Eam1104I CTCTTC 2 cut(s) 143, 395
EarI CTCTTC 2 cut(s) 143, 395
EciI GGCGGA 2 cut(s) 88, 383
Eco24I GRGCYC 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 26, 441
Eco88I CYCGRG 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 205
FaeI CATG 2 cut(s) 201, 448
FaiI YATR 4 cut(s) 199, 401, 416, 446
FatI CATG 2 cut(s) 197, 444
Fnu4HI GCNGC 3 cut(s) 256, 294, 467
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 3 cut(s) 256, 294, 467
FspBI CTAG 1 cut(s) 329
GluI GCNGC 3 cut(s) 256, 294, 467
HaeIII GGCC 3 cut(s) 408, 434, 466
HapII CCGG 2 cut(s) 117, 261
HgaI GACGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 2 cut(s) 201, 448
HinfI GANTC 1 cut(s) 385
HpaII CCGG 2 cut(s) 117, 261
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 2 cut(s) 75, 271
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4V TGCA 2 cut(s) 237, 336
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 209, 255, 350
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 2 cut(s) 201, 448
KspI CCGCGG 1 cut(s) 256
LmnI GCTCC 2 cut(s) 13, 309
LpnPI CCDG 4 cut(s) 130, 274, 346, 448
Lsp1109I GCAGC 1 cut(s) 305
MaeI CTAG 1 cut(s) 329
MboII GAAGA 6 cut(s) 11, 130, 133, 277, 290, 382
MhlI GDGCHC 1 cut(s) 205
MspA1I CMGCKG 1 cut(s) 255
MspI CCGG 2 cut(s) 117, 261
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 4 cut(s) 126, 209, 255, 350
NlaIII CATG 2 cut(s) 201, 448
NlaIV GGNNCC 2 cut(s) 259, 305
NmeAIII GCCGAG 1 cut(s) 460
PfeI GAWTC 1 cut(s) 385
PkrI GCNGC 3 cut(s) 257, 295, 468
PspN4I GGNNCC 2 cut(s) 259, 305
PspPI GGNCC 2 cut(s) 26, 441
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SacII CCGCGG 1 cut(s) 256
SatI GCNGC 3 cut(s) 256, 294, 467
Sau96I GGNCC 2 cut(s) 26, 441
SduI GDGCHC 1 cut(s) 205
Sfr303I CCGCGG 1 cut(s) 256
SgrBI CCGCGG 1 cut(s) 256
SinI GGWCC 2 cut(s) 26, 441
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SsiI CCGC 6 cut(s) 60, 99, 253, 255, 394, 467
SspMI CTAG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 132
TauI GCSGC 2 cut(s) 258, 469
TfiI GAWTC 1 cut(s) 385
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 1 cut(s) 233
VpaK11BI GGWCC 2 cut(s) 26, 441
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.