MD00G1095100.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000255
Physical Location & Seq
Forward (+)
19901397 .. 19903340
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1095100.v1.1.491

Sequence Viewer

Length: 1944 bp
ATGGCTCCTCCAAGTCTTCTTCTTGGTCCTCCGGAGCTCAAAAATTCCCCTAAATCCGATTCCAGCTATCCAGTTGACGCCGATTACTACGGCGAAGCCACCACCGTCAGACCCCCGATGGGCTTCACCGAGAACGGCGCACCCACCTTCGTCTCCTCAGGCAACCCCTGCCTCGATCTCTTCTTCCACGTCGTGCCCGACACCCCGGCATCCTACCTCAATCAACAGCTCCCGTTGGCTTGGTCCCACGACGCCCTAACCACCCTCAAACTAATCTGCAACCTCCGAGGCGTGCGCGGCACCGGAAAGTCTGACAAGCAGAACTTCTACACGGCTGCGATTTGGCTCCACAACCACCACCCCAAAACCCTAGCCGGCAATCTCTTCTCTTTCGCGGAGTTTGGGTACTTTAAGGACCTGCCGGAGATTCTTTACCGGCTTCTAGAAGGTCCGAACGTGAGGGCGATCCAGAAGAGCCAGTGGTTGGAGAGGAAGAGCAGCGTGGTGGGTGTACTGAGCAGGGGGAGGTTTAAGCGCACAAAGACCGAGAAGCCCAAGGAGCCTCGGGTACCGAAAGTGAAAAAATTGACCGGAGCGGAGAGGGCACGATTGGAAAAGGAGAATGTGAGGGCTTCGAGGAAGGAGAAGTTTCTGGCCATGGCGAAGAAGGCGGTTGAGAGGTACCAGCGCGACCCGGATTACCAATTCTTGCACGAAAGGGTTTCGGATCTCTTCGCGGAGTGCTTGAAATCCGACATTGAGCACTTGAATTCGGATAAACAGCCCAAGAAGATCAGCCTTGCCGCGAAGTGGTGCCCTTCAATTGACTCCTCGTTCGATCGGGCAACTCTTATCTGCGAATGCATCGCAAAGAAGGTTTTCTCGCGAGAATCTTGCATTGAGTATCAGGAATTGGAGGAGGAGCATTACGCGTACAGGGTTCGTGATAGGCTGAGAAAGGAGGTGTTGGTGCCCTTGAGGAAGGCGTTGGAGTTGCCGGAGGTTTATATGTCCGCCACTCAATGGGGGTTGATTCCCTACAATCGGGTGGCTTCCGTGGCCATGAAGCTTTACAAGGACAAGTTCTTGAAGCATGATCGCGAGCGGTTCGGAAAGTATTTGGCCGATGTGAAAGCTGGTAAGTCCACCATTGCGGCGGGTGCTCTGCTTCCGCACGAGATCATAGCCTCTCTGAATATTGATAGTTATATGGTGTATAGATACATGGATAGCGATGATGAGGATCGGGTTCAAGACGATGGGGGGTGTCAAGTGGCTGAGCTTCAGTGGAAGAGAATGGTGGATGACTTGTTGAAGCAGGGGAAGTTGAGGAATTCCTTGGCGGTTTGTGATGTCTCCGGAAGCATGAACGGAGACCCGATGGACGTGTCTGTAGCTTTGGGGCTTCTGTTGTCGGAATTGAGTGCAGATCCATGGAAAGGAAAGGTTATCACTTTCAGCGCGTCGCCTAAGCTGCATTTGATCGAAGGGGATGATCTCCGGGCCAAGTGTGCCTTCATGAGAGACATGGATTGGGGGGACAACACCAATTTCCAAAAGGTGTTTGATTTGCTTCTCGAGGTGGCTGTGAAGGGGAACTTGAAGCCGGAGGACATGATAAAAAGGGTGTTTGTGTTCAGCGACATGGAGTTCGATGAATCCTCGGCTACAGGGAACGATTGGGAGACCGATTACGAGGCAATTAAAAGGAAGTTTGAAGAGAGAGGTTATGGGAACGCGGTGCCACAGATAGTGTTTTGGAATCTGAGGCACTCGGAGGCTACGCCTGCGCCTTCGAACCAACCTGGGGTGGCATTCTTGAGCGGATTCTCCAAGAACTTGATCAAGATGTTCATGGATAATGATGGGGAAATCCGCCCGGATCGCATCATGGAAGCAGCCATCTCCGGTGAAGAGTATCAGAGATTGGTTCTGGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

648

Amino Acids

73.46

Weight (kDa)

6.89

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 43 - 443 9.8e-140 Domain of unknown function (DUF2828)
DUF7788 PF25043 445 - 625 4.4e-77 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 426
Acc65I GGTACC 2 cut(s) 568, 681
AccB1I GGYRCC 6 cut(s) 299, 568, 681, 813, 970, 1741
AccB7I CCANNNNNTGG 2 cut(s) 484, 1023
AccBSI CCGCTC 3 cut(s) 596, 1105, 1824
AccIII TCCGGA 2 cut(s) 31, 1358
AclWI GGATC 5 cut(s) 460, 735, 1251, 1424, 1890
AcoI YGGCCR 3 cut(s) 654, 1059, 1122
AcsI RAATTY 3 cut(s) 43, 769, 1333
AcuI CTGAAG 1 cut(s) 1268
AcyI GRCGYC 2 cut(s) 78, 252
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 5 cut(s) 407, 513, 570, 683, 935
AfiI CCNNNNNNNGG 7 cut(s) 119, 484, 810, 1023, 1044, 1439, 1807
AflIII ACRYGT 2 cut(s) 930, 1386
AgsI TTSAA 8 cut(s) 748, 769, 822, 1090, 1253, 1315, 1603, 1718
AjiI CACGTC 2 cut(s) 190, 1387
AjnI CCWGG 1 cut(s) 1804
AjuI GAANNNNNNNTTGG 2 cut(s) 1499, 1531
AluBI AGCT 8 cut(s) 37, 66, 229, 1069, 1136, 1282, 1397, 1474
AluI AGCT 8 cut(s) 37, 66, 229, 1069, 1136, 1282, 1397, 1474
Alw21I GWGCWC 3 cut(s) 39, 765, 1165
Alw26I GTCTC 5 cut(s) 157, 1360, 1368, 1518, 1679
AlwI GGATC 5 cut(s) 460, 735, 1251, 1424, 1890
Ama87I CYCGRG 2 cut(s) 564, 1577
Aor13HI TCCGGA 2 cut(s) 31, 1358
AoxI GGCC 4 cut(s) 654, 1059, 1122, 1503
ApeKI GCWGC 4 cut(s) 335, 498, 1474, 1898
ApoI RAATTY 3 cut(s) 43, 769, 1333
ArsI GACNNNNNNTTYG 4 cut(s) 818, 850, 1634, 1666
Asp700I GAANNNNTTC 1 cut(s) 878
Asp718I GGTACC 2 cut(s) 568, 681
AspLEI GCGC 6 cut(s) 140, 297, 537, 690, 1463, 1792
AspS9I GGNCC 5 cut(s) 26, 243, 415, 449, 1503
AsuC2I CCSGG 4 cut(s) 206, 695, 1502, 1880
AsuHPI GGTGA 2 cut(s) 118, 1922
AsuII TTCGAA 1 cut(s) 1796
AvaI CYCGRG 2 cut(s) 564, 1577
AvaII GGWCC 4 cut(s) 26, 243, 415, 449
AxyI CCTNAGG 1 cut(s) 157
BaeGI GKGCMC 4 cut(s) 198, 607, 818, 975
BalI TGGCCA 2 cut(s) 656, 1061
BanI GGYRCC 6 cut(s) 299, 568, 681, 813, 970, 1741
BanII GRGCYC 1 cut(s) 39
BauI CACGAG 1 cut(s) 1175
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 3 cut(s) 39, 765, 1165
BbvI GCAGC 4 cut(s) 322, 510, 1461, 1910
BccI CCATC 5 cut(s) 112, 1253, 1375, 1859, 1910
BceAI ACGGC 3 cut(s) 106, 151, 348
BcgI CGANNNNNNTGC 2 cut(s) 876, 910
BciT130I CCWGG 1 cut(s) 1806
BclI TGATCA 1 cut(s) 1842
BcnI CCSGG 4 cut(s) 206, 695, 1502, 1880
BcoDI GTCTC 5 cut(s) 157, 1360, 1368, 1518, 1679
BfaI CTAG 2 cut(s) 371, 443
BfmI CTRYAG 2 cut(s) 1392, 1668
BfuAI ACCTGC 1 cut(s) 426
BisI GCNGC 7 cut(s) 298, 336, 499, 804, 1155, 1475, 1899
BlpI GCTNAGC 1 cut(s) 1278
BlsI GCNGC 7 cut(s) 299, 337, 500, 805, 1156, 1476, 1900
Bme1390I CCNGG 5 cut(s) 206, 695, 1502, 1806, 1880
Bme18I GGWCC 4 cut(s) 26, 243, 415, 449
BmeT110I CYCGRG 2 cut(s) 564, 1577
BmgBI CACGTC 2 cut(s) 190, 1387
BmgT120I GGNCC 5 cut(s) 26, 243, 415, 449, 1503
BmrFI CCNGG 5 cut(s) 206, 695, 1502, 1806, 1880
BmsI GCATC 3 cut(s) 218, 873, 1896
BpiI GAAGAC 1 cut(s) 8
Bpu10I CCTNAGC 1 cut(s) 1470
Bpu1102I GCTNAGC 1 cut(s) 1278
Bpu14I TTCGAA 1 cut(s) 1796
BpuEI CTTGAG 2 cut(s) 997, 1840
BpuMI CCSGG 4 cut(s) 206, 695, 1502, 1880
BsaBI GATNNNNATC 1 cut(s) 1242
BsaHI GRCGYC 2 cut(s) 78, 252
BsaI GGTCTC 2 cut(s) 1368, 1679
BsaWI WCCGGW 5 cut(s) 31, 302, 590, 1358, 1907
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 7 cut(s) 119, 484, 810, 1023, 1044, 1439, 1807
Bse118I RCCGGY 2 cut(s) 374, 435
Bse1I ACTGG 2 cut(s) 71, 478
Bse21I CCTNAGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 1149
Bse8I GATNNNNATC 1 cut(s) 1242
BseAI TCCGGA 2 cut(s) 31, 1358
BseBI CCWGG 1 cut(s) 1806
BseGI GGATG 3 cut(s) 209, 1309, 1498
BseJI GATNNNNATC 1 cut(s) 1242
BseLI CCNNNNNNNGG 7 cut(s) 119, 484, 810, 1023, 1044, 1439, 1807
BseMI GCAATG 1 cut(s) 1149
BseMII CTCAG 5 cut(s) 171, 506, 944, 1269, 1757
BseNI ACTGG 2 cut(s) 71, 478
BseRI GAGGAG 4 cut(s) 145, 820, 932, 935
BseSI GKGCMC 4 cut(s) 198, 607, 818, 975
BseXI GCAGC 4 cut(s) 322, 510, 1461, 1910
BsgI GTGCAG 1 cut(s) 1446
Bsh1285I CGRYCG 1 cut(s) 841
BshFI GGCC 4 cut(s) 656, 1061, 1124, 1505
BshNI GGYRCC 6 cut(s) 299, 568, 681, 813, 970, 1741
BsiEI CGRYCG 1 cut(s) 841
BsiHKAI GWGCWC 3 cut(s) 39, 765, 1165
BsiHKCI CYCGRG 2 cut(s) 564, 1577
BslFI GGGAC 2 cut(s) 229, 1553
BslI CCNNNNNNNGG 7 cut(s) 119, 484, 810, 1023, 1044, 1439, 1807
BsmAI GTCTC 5 cut(s) 157, 1360, 1368, 1518, 1679
BsmBI CGTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 229, 1553
BsmI GAATGC 2 cut(s) 866, 1814
BsnI GGCC 4 cut(s) 656, 1061, 1124, 1505
Bso31I GGTCTC 2 cut(s) 1368, 1679
BsoBI CYCGRG 2 cut(s) 564, 1577
Bsp119I TTCGAA 1 cut(s) 1796
Bsp1286I GDGCHC 7 cut(s) 39, 198, 607, 765, 818, 975, 1165
Bsp13I TCCGGA 2 cut(s) 31, 1358
Bsp1720I GCTNAGC 1 cut(s) 1278
Bsp19I CCATGG 2 cut(s) 657, 1433
Bsp68I TCGCGA 2 cut(s) 886, 1101
BspANI GGCC 4 cut(s) 656, 1061, 1124, 1505
BspCNI CTCAG 5 cut(s) 170, 507, 945, 1270, 1758
BspEI TCCGGA 2 cut(s) 31, 1358
BspHI TCATGA 1 cut(s) 1518
BspMI ACCTGC 1 cut(s) 426
BspPI GGATC 5 cut(s) 460, 735, 1251, 1424, 1890
BspQI GCTCTTC 2 cut(s) 467, 488
BspT104I TTCGAA 1 cut(s) 1796
BspT107I GGYRCC 6 cut(s) 299, 568, 681, 813, 970, 1741
BspTNI GGTCTC 2 cut(s) 1368, 1679
BsrBI CCGCTC 3 cut(s) 596, 1105, 1824
BsrDI GCAATG 1 cut(s) 1149
BsrFI RCCGGY 2 cut(s) 374, 435
BsrI ACTGG 2 cut(s) 71, 478
BssAI RCCGGY 2 cut(s) 374, 435
BssNI GRCGYC 2 cut(s) 78, 252
BssSI CACGAG 1 cut(s) 1175
BssT1I CCWWGG 4 cut(s) 555, 657, 1338, 1433
Bst2BI CACGAG 1 cut(s) 1175
Bst2UI CCWGG 1 cut(s) 1806
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 8 cut(s) 185, 389, 467, 488, 737, 1286, 1713, 1908
BstACI GRCGYC 2 cut(s) 78, 252
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBI TTCGAA 1 cut(s) 1796
BstC8I GCNNGC 4 cut(s) 293, 376, 1103, 1788
BstDEI CTNAG 6 cut(s) 157, 515, 953, 1278, 1470, 1766
BstDSI CCRYGG 3 cut(s) 657, 1056, 1433
BstF5I GGATG 3 cut(s) 209, 1309, 1498
BstHHI GCGC 6 cut(s) 140, 297, 537, 690, 1463, 1792
BstMAI GTCTC 5 cut(s) 157, 1360, 1368, 1518, 1679
BstMCI CGRYCG 1 cut(s) 841
BstNI CCWGG 1 cut(s) 1806
BstSCI CCNGG 5 cut(s) 204, 693, 1500, 1804, 1878
BstSFI CTRYAG 2 cut(s) 1392, 1668
BstSLI GKGCMC 4 cut(s) 198, 607, 818, 975
BstV1I GCAGC 4 cut(s) 322, 510, 1461, 1910
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 2 cut(s) 727, 1429
BstYI RGATCY 2 cut(s) 727, 1429
Bsu36I CCTNAGG 1 cut(s) 157
BsuRI GGCC 4 cut(s) 656, 1061, 1124, 1505
BtgI CCRYGG 3 cut(s) 657, 1056, 1433
BtgZI GCGATG 2 cut(s) 850, 1248
BtrI CACGTC 2 cut(s) 190, 1387
BtsCI GGATG 3 cut(s) 209, 1309, 1498
BtsIMutI CAGTG 2 cut(s) 485, 1292
BtuMI TCGCGA 2 cut(s) 886, 1101
BveI ACCTGC 1 cut(s) 426
Cac8I GCNNGC 4 cut(s) 293, 376, 1103, 1788
CciI TCATGA 1 cut(s) 1518
CfoI GCGC 6 cut(s) 140, 297, 537, 690, 1463, 1792
Cfr10I RCCGGY 2 cut(s) 374, 435
Cfr13I GGNCC 5 cut(s) 26, 243, 415, 449, 1503
CseI GACGC 3 cut(s) 86, 260, 1452
Csp6I GTAC 5 cut(s) 406, 512, 569, 682, 934
CviQI GTAC 5 cut(s) 406, 512, 569, 682, 934
DdeI CTNAG 6 cut(s) 157, 515, 953, 1278, 1470, 1766
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 3 cut(s) 654, 1059, 1122
Eam1104I CTCTTC 8 cut(s) 185, 389, 467, 488, 737, 1286, 1713, 1908
EarI CTCTTC 8 cut(s) 185, 389, 467, 488, 737, 1286, 1713, 1908
EciI GGCGGA 2 cut(s) 1003, 1865
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 4 cut(s) 555, 657, 1338, 1433
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 2 cut(s) 1368, 1679
Eco47I GGWCC 4 cut(s) 26, 243, 415, 449
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 1268
Eco81I CCTNAGG 1 cut(s) 157
Eco88I CYCGRG 2 cut(s) 564, 1577
EcoICRI GAGCTC 1 cut(s) 37
EcoO109I RGGNCCY 1 cut(s) 415
EcoRI GAATTC 2 cut(s) 769, 1333
EcoRII CCWGG 1 cut(s) 1804
EcoT14I CCWWGG 4 cut(s) 555, 657, 1338, 1433
EcoT22I ATGCAT 1 cut(s) 866
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 4 cut(s) 555, 657, 1338, 1433
Esp3I CGTCTC 1 cut(s) 157
FalI AAGNNNNNCTT 6 cut(s) 308, 340, 1499, 1531, 1583, 1615
FaqI GGGAC 2 cut(s) 229, 1553
FauI CCCGC 1 cut(s) 1150
FbaI TGATCA 1 cut(s) 1842
Fnu4HI GCNGC 7 cut(s) 298, 336, 499, 804, 1155, 1475, 1899
FokI GGATG 3 cut(s) 196, 1316, 1505
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 7 cut(s) 298, 336, 499, 804, 1155, 1475, 1899
FspBI CTAG 2 cut(s) 371, 443
GlaI GCGC 6 cut(s) 139, 296, 536, 689, 1462, 1791
GluI GCNGC 7 cut(s) 298, 336, 499, 804, 1155, 1475, 1899
HaeIII GGCC 4 cut(s) 656, 1061, 1124, 1505
HgaI GACGC 3 cut(s) 86, 260, 1452
HhaI GCGC 6 cut(s) 140, 297, 537, 690, 1463, 1792
Hin1I GRCGYC 2 cut(s) 78, 252
Hin6I GCGC 6 cut(s) 138, 295, 535, 688, 1461, 1790
HinP1I GCGC 6 cut(s) 138, 295, 535, 688, 1461, 1790
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 1067
HinfI GANTC 8 cut(s) 59, 427, 827, 890, 1033, 1658, 1762, 1827
HphI GGTGA 2 cut(s) 118, 1922
Hpy166II GTNNAC 4 cut(s) 76, 512, 1146, 1939
Hpy8I GTNNAC 4 cut(s) 76, 512, 1146, 1939
Hpy99I CGWCG 3 cut(s) 194, 254, 1468
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4IV ACGT 3 cut(s) 189, 456, 1386
HpyCH4V TGCA 6 cut(s) 279, 712, 864, 897, 1427, 1477
HpyF3I CTNAG 6 cut(s) 157, 515, 953, 1278, 1470, 1766
HpySE526I ACGT 3 cut(s) 189, 456, 1386
Hsp92I GRCGYC 2 cut(s) 78, 252
HspAI GCGC 6 cut(s) 138, 295, 535, 688, 1461, 1790
Kpn2I TCCGGA 2 cut(s) 31, 1358
KpnI GGTACC 2 cut(s) 572, 685
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 1842
LguI GCTCTTC 2 cut(s) 467, 488
LmnI GCTCC 7 cut(s) 10, 34, 234, 351, 559, 593, 922
Lsp1109I GCAGC 4 cut(s) 322, 510, 1461, 1910
LweI GCATC 3 cut(s) 218, 873, 1896
MaeI CTAG 2 cut(s) 371, 443
MaeII ACGT 3 cut(s) 189, 456, 1386
MbiI CCGCTC 3 cut(s) 596, 1105, 1824
MfeI CAATTG 1 cut(s) 822
MflI RGATCY 2 cut(s) 727, 1429
MhlI GDGCHC 7 cut(s) 39, 198, 607, 765, 818, 975, 1165
MlsI TGGCCA 2 cut(s) 656, 1061
MluI ACGCGT 1 cut(s) 930
MluNI TGGCCA 2 cut(s) 656, 1061
MlyI GAGTC 1 cut(s) 821
MmeI TCCRAC 4 cut(s) 465, 777, 969, 1395
Mox20I TGGCCA 2 cut(s) 656, 1061
Mph1103I ATGCAT 1 cut(s) 866
MroI TCCGGA 2 cut(s) 31, 1358
MroNI GCCGGC 1 cut(s) 374
MroXI GAANNNNTTC 1 cut(s) 878
MscI TGGCCA 2 cut(s) 656, 1061
MseI TTAA 3 cut(s) 411, 531, 1704
Msp20I TGGCCA 2 cut(s) 656, 1061
MspR9I CCNGG 5 cut(s) 206, 695, 1502, 1806, 1880
MunI CAATTG 1 cut(s) 822
Mva1269I GAATGC 2 cut(s) 866, 1814
MvaI CCWGG 1 cut(s) 1806
NaeI GCCGGC 1 cut(s) 376
NciI CCSGG 4 cut(s) 206, 695, 1502, 1880
NcoI CCATGG 2 cut(s) 657, 1433
NgoMIV GCCGGC 1 cut(s) 374
NmeAIII GCCGAG 1 cut(s) 1643
NruI TCGCGA 2 cut(s) 886, 1101
NsiI ATGCAT 1 cut(s) 866
NspV TTCGAA 1 cut(s) 1796
PaeR7I CTCGAG 1 cut(s) 1577
PagI TCATGA 1 cut(s) 1518
PciSI GCTCTTC 2 cut(s) 467, 488
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PctI GAATGC 2 cut(s) 866, 1814
PdiI GCCGGC 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 878
PfeI GAWTC 7 cut(s) 59, 427, 890, 1033, 1658, 1762, 1827
PflMI CCANNNNNTGG 2 cut(s) 484, 1023
PkrI GCNGC 7 cut(s) 299, 337, 500, 805, 1156, 1476, 1900
Ple19I CGATCG 1 cut(s) 841
PleI GAGTC 1 cut(s) 821
PpsI GAGTC 1 cut(s) 821
PpuMI RGGWCCY 1 cut(s) 415
Psp124BI GAGCTC 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 1804
PspGI CCWGG 1 cut(s) 1804
PspPI GGNCC 5 cut(s) 26, 243, 415, 449, 1503
PspPPI RGGWCCY 1 cut(s) 415
PsuI RGATCY 2 cut(s) 727, 1429
PvuI CGATCG 1 cut(s) 841
RruI TCGCGA 2 cut(s) 886, 1101
RsaI GTAC 5 cut(s) 407, 513, 570, 683, 935
RsaNI GTAC 5 cut(s) 406, 512, 569, 682, 934
SacI GAGCTC 1 cut(s) 39
SapI GCTCTTC 2 cut(s) 467, 488
SaqAI TTAA 3 cut(s) 411, 531, 1704
SatI GCNGC 7 cut(s) 298, 336, 499, 804, 1155, 1475, 1899
Sau96I GGNCC 5 cut(s) 26, 243, 415, 449, 1503
SchI GAGTC 1 cut(s) 821
ScrFI CCNGG 5 cut(s) 206, 695, 1502, 1806, 1880
SduI GDGCHC 7 cut(s) 39, 198, 607, 765, 818, 975, 1165
SfaNI GCATC 3 cut(s) 218, 873, 1896
SfcI CTRYAG 2 cut(s) 1392, 1668
Sfr274I CTCGAG 1 cut(s) 1577
SfuI TTCGAA 1 cut(s) 1796
SinI GGWCC 4 cut(s) 26, 243, 415, 449
SlaI CTCGAG 1 cut(s) 1577
SmlI CTYRAG 3 cut(s) 976, 1577, 1819
SmoI CTYRAG 3 cut(s) 976, 1577, 1819
SspI AATATT 1 cut(s) 1198
SspMI CTAG 2 cut(s) 371, 443
SstI GAGCTC 1 cut(s) 39
StyD4I CCNGG 5 cut(s) 204, 693, 1500, 1804, 1878
StyI CCWWGG 4 cut(s) 555, 657, 1338, 1433
TaaI ACNGT 1 cut(s) 106
TaiI ACGT 3 cut(s) 192, 459, 1389
TaqI TCGA 7 cut(s) 174, 635, 837, 1485, 1578, 1653, 1796
TaqII GACCGA 2 cut(s) 560, 1703
TatI WGTACW 1 cut(s) 511
TauI GCSGC 3 cut(s) 300, 806, 1157
TfiI GAWTC 7 cut(s) 59, 427, 890, 1033, 1658, 1762, 1827
Tru1I TTAA 3 cut(s) 411, 531, 1704
Tru9I TTAA 3 cut(s) 411, 531, 1704
TscAI CASTG 2 cut(s) 485, 1292
TseI GCWGC 4 cut(s) 335, 498, 1474, 1898
TspDTI ATGAA 5 cut(s) 1079, 1382, 1507, 1671, 1843
TspGWI ACGGA 2 cut(s) 1045, 1386
TspRI CASTG 2 cut(s) 485, 1292
Van91I CCANNNNNTGG 2 cut(s) 484, 1023
VpaK11BI GGWCC 4 cut(s) 26, 243, 415, 449
XapI RAATTY 3 cut(s) 43, 769, 1333
XbaI TCTAGA 1 cut(s) 442
XhoI CTCGAG 1 cut(s) 1577
XmnI GAANNNNTTC 1 cut(s) 878
XspI CTAG 2 cut(s) 371, 443
Zsp2I ATGCAT 1 cut(s) 866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.