MD15G1240300.v1.1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000255
Physical Location & Seq
Reverse (-)
19782055 .. 19783456
1402 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1240300.v1.1.491

Sequence Viewer

Length: 357 bp
ATGATCAAACCTGAGTATTCGGCTGGGCATTGTAGAGAACCAGAACCAAGGGTGACGTTGTTAAGTCGCTTCTCGTACAAGCTGCTCGAGTCCTTCTTCGAAAATTATGGTGACATCGGCCCCAACCATGTCATAGAAGCTGCTGTATCTGCCCCAGCCTATCAAACTCTTGCAGTAGTCGACCGACTGACTCGCACAGATCACTGGTGTGAATGTGTTCATTTATATATTTCTTGGGTCGTAAAAGTTCCTCTCCAGACCATTGGAAATGATGCTCGTGAGGAATCGCCACCACCAACGGAACCTGTAGACTTGGACTGTCAGATTCTGACTCAACCCGAGTGGTGCCGGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

119

Amino Acids

13.49

Weight (kDa)

4.95

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 345
AccI GTMKAC 2 cut(s) 180, 309
AfaI GTAC 1 cut(s) 77
AleI CACNNNNGTG 1 cut(s) 207
AluBI AGCT 2 cut(s) 82, 140
AluI AGCT 2 cut(s) 82, 140
AlwNI CAGNNNCTG 1 cut(s) 328
Ama87I CYCGRG 2 cut(s) 86, 338
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 2 cut(s) 82, 140
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 64, 122
AsuII TTCGAA 1 cut(s) 99
AvaI CYCGRG 2 cut(s) 86, 338
BanI GGYRCC 1 cut(s) 345
BauI CACGAG 1 cut(s) 276
BbvI GCAGC 2 cut(s) 69, 127
BclI TGATCA 1 cut(s) 3
BfmI CTRYAG 1 cut(s) 306
BisI GCNGC 2 cut(s) 83, 141
BlsI GCNGC 2 cut(s) 84, 142
BmeT110I CYCGRG 2 cut(s) 86, 338
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 3 cut(s) 121, 303, 347
BmsI GCATC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 239
Bpu14I TTCGAA 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 209
BseDI CCNNGG 1 cut(s) 47
BseNI ACTGG 1 cut(s) 209
BseXI GCAGC 2 cut(s) 69, 127
BseYI CCCAGC 2 cut(s) 23, 154
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 345
BsiEI CGRYCG 1 cut(s) 184
BsiHKCI CYCGRG 2 cut(s) 86, 338
BsiSI CCGG 1 cut(s) 349
BsnI GGCC 1 cut(s) 120
BsoBI CYCGRG 2 cut(s) 86, 338
Bsp119I TTCGAA 1 cut(s) 99
Bsp143I GATC 2 cut(s) 3, 199
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 4
BspLI GGNNCC 3 cut(s) 121, 303, 347
BspT104I TTCGAA 1 cut(s) 99
BspT107I GGYRCC 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 348
BsrI ACTGG 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 2 cut(s) 3, 199
BssSI CACGAG 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 320
BstBI TTCGAA 1 cut(s) 99
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 2 cut(s) 6, 202
BstMBI GATC 2 cut(s) 3, 199
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 69, 127
BstXI CCANNNNNNTGG 1 cut(s) 263
BsuRI GGCC 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 202
CaiI CAGNNNCTG 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 76
CspCI CAANNNNNGTGG 1 cut(s) 323
CviAII CATG 1 cut(s) 128
CviJI RGCY 5 cut(s) 23, 82, 120, 140, 158
CviKI_1 RGCY 5 cut(s) 23, 82, 120, 140, 158
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 1 cut(s) 12
DpnI GATC 2 cut(s) 5, 201
DpnII GATC 2 cut(s) 3, 199
Eco130I CCWWGG 1 cut(s) 47
Eco88I CYCGRG 2 cut(s) 86, 338
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 1 cut(s) 131
FaiI YATR 5 cut(s) 108, 129, 134, 226, 228
FatI CATG 1 cut(s) 127
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 2 cut(s) 180, 309
Fnu4HI GCNGC 2 cut(s) 83, 141
Fsp4HI GCNGC 2 cut(s) 83, 141
GluI GCNGC 2 cut(s) 83, 141
GsaI CCCAGC 2 cut(s) 27, 158
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 1 cut(s) 120
HapII CCGG 1 cut(s) 349
Hin1II CATG 1 cut(s) 131
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 5 cut(s) 89, 190, 284, 325, 331
HpaII CCGG 1 cut(s) 349
HphI GGTGA 2 cut(s) 64, 122
Hpy166II GTNNAC 2 cut(s) 181, 310
Hpy188I TCNGA 2 cut(s) 324, 330
Hpy188III TCNNGA 2 cut(s) 256, 278
Hpy8I GTNNAC 2 cut(s) 181, 310
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 56
Hsp92II CATG 1 cut(s) 131
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 199
LpnPI CCDG 7 cut(s) 9, 24, 54, 168, 190, 269, 318
Lsp1109I GCAGC 2 cut(s) 69, 127
LweI GCATC 1 cut(s) 262
MaeII ACGT 1 cut(s) 56
MaeIII GTNAC 2 cut(s) 52, 110
MalI GATC 2 cut(s) 5, 201
MboI GATC 2 cut(s) 3, 199
MboII GAAGA 1 cut(s) 88
MluCI AATT 1 cut(s) 103
MlyI GAGTC 3 cut(s) 98, 184, 325
MnlI CCTC 2 cut(s) 261, 274
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 1 cut(s) 62
MslI CAYNNNNRTG 1 cut(s) 207
MspI CCGG 1 cut(s) 349
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 2 cut(s) 3, 199
NlaIII CATG 1 cut(s) 131
NlaIV GGNNCC 3 cut(s) 121, 303, 347
NmuCI GTSAC 2 cut(s) 52, 110
NspV TTCGAA 1 cut(s) 99
OliI CACNNNNGTG 1 cut(s) 207
PaeR7I CTCGAG 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 284, 325
PkrI GCNGC 2 cut(s) 84, 142
PleI GAGTC 3 cut(s) 97, 184, 325
PpsI GAGTC 3 cut(s) 97, 184, 325
PspFI CCCAGC 2 cut(s) 23, 154
PspN4I GGNNCC 3 cut(s) 121, 303, 347
PspPI GGNCC 1 cut(s) 119
PspXI VCTCGAGB 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 328
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 207
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 2 cut(s) 83, 141
Sau3AI GATC 2 cut(s) 3, 199
Sau96I GGNCC 1 cut(s) 119
SchI GAGTC 3 cut(s) 98, 184, 325
SetI ASST 5 cut(s) 13, 59, 84, 142, 307
SfaNI GCATC 1 cut(s) 262
SfcI CTRYAG 1 cut(s) 306
Sfr274I CTCGAG 1 cut(s) 86
SfuI TTCGAA 1 cut(s) 99
SlaI CTCGAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 103
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 87, 99, 180
TaqII GACCGA 1 cut(s) 198
TasI AATT 1 cut(s) 103
TfiI GAWTC 2 cut(s) 284, 325
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 2 cut(s) 52, 110
TseI GCWGC 2 cut(s) 82, 140
Tsp45I GTSAC 2 cut(s) 52, 110
TspDTI ATGAA 1 cut(s) 209
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 1 cut(s) 209
XhoI CTCGAG 1 cut(s) 86
XmiI GTMKAC 2 cut(s) 180, 309
XmnI GAANNNNTTC 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.