Rroxscaffold_5G00349680

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000255
Physical Location & Seq
Reverse (-)
22777644 .. 22792413
14770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00349680.1

Sequence Viewer

Length: 486 bp
ATGTCACCCCTATGCAATAGCAGACAGACTAGAGTTCTAAATGATCATAACCACTCACCCAGCCAAAGGCGTGGTTCCCAATATAATTGTCTCGTTACCACCGTGACACTAGATCCACTCCCTCTCGCTTGGGCCCACGACGCCATAACCACCCTTAAGCTCATCCGCGACCTCCGCGGCGTACGCGCACCGGAAAGTCCCGACAAAGAAAATCTATTCCCTTGCTTCGGTGGTTTGGAGCAAAACATTCGTGGTAAAGGCTGGTATTGGCGCTCGCGTGCCTTTGATCTTAGGAACAGCTTTATCAGCTTGTTAGAGTTGCTTCTTGCTAGCCTTGGTCTGTACAAGGCTTCTTTACAGATTAGGCAAACGGGGGGTGGTGGGAGGAGTATAGAGCAGACCAGTGAAACCACCCTCAGCATGTACAAGGATCCCATGGTGTTGAAGAAAAGCGGAAGAAATCAGCAGTTGGGTATATCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

161

Amino Acids

18.09

Weight (kDa)

9.81

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 168, 177, 186, 277
AciI CCGC 4 cut(s) 166, 175, 177, 453
AclWI GGATC 3 cut(s) 107, 425, 438
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 3 cut(s) 183, 344, 425
AfiI CCNNNNNNNGG 2 cut(s) 66, 227
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 445
AluBI AGCT 3 cut(s) 160, 300, 309
AluI AGCT 3 cut(s) 160, 300, 309
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 3 cut(s) 107, 425, 438
AoxI GGCC 1 cut(s) 132
ApaI GGGCCC 1 cut(s) 136
AspLEI GCGC 2 cut(s) 188, 273
AspS9I GGNCC 2 cut(s) 132, 133
AsuHPI GGTGA 1 cut(s) 48
AsuNHI GCTAGC 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 136
BamHI GGATCC 1 cut(s) 430
BanII GRGCYC 1 cut(s) 136
BbvCI CCTCAGC 1 cut(s) 416
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 95
BfaI CTAG 3 cut(s) 30, 110, 330
BfoI RGCGCY 1 cut(s) 274
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 178
BlsI GCNGC 1 cut(s) 179
BmgT120I GGNCC 2 cut(s) 132, 133
BmiI GGNNCC 3 cut(s) 76, 134, 432
BmtI GCTAGC 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 3 cut(s) 175, 334, 435
BsaWI WCCGGW 1 cut(s) 190
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 227
Bse1I ACTGG 1 cut(s) 402
BseDI CCNNGG 3 cut(s) 175, 334, 435
BseGI GGATG 1 cut(s) 162
BseLI CCNNNNNNNGG 2 cut(s) 66, 227
BseMII CTCAG 1 cut(s) 430
BseNI ACTGG 1 cut(s) 402
BseRI GAGGAG 1 cut(s) 400
BseSI GKGCMC 1 cut(s) 136
BseYI CCCAGC 1 cut(s) 59
Bsh1236I CGCG 4 cut(s) 168, 177, 186, 277
BshFI GGCC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 191
BsiWI CGTACG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 2 cut(s) 66, 227
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 1 cut(s) 134
Bsp120I GGGCCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 136
Bsp1407I TGTACA 2 cut(s) 342, 423
Bsp143I GATC 4 cut(s) 43, 112, 286, 430
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 4 cut(s) 166, 175, 177, 453
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 429
BspFNI CGCG 4 cut(s) 168, 177, 186, 277
BspLI GGNNCC 3 cut(s) 76, 134, 432
BspOI GCTAGC 1 cut(s) 333
BspPI GGATC 3 cut(s) 107, 425, 438
BspTI CTTAAG 1 cut(s) 155
BsrGI TGTACA 2 cut(s) 342, 423
BsrI ACTGG 1 cut(s) 402
BssECI CCNNGG 3 cut(s) 175, 334, 435
BssMI GATC 4 cut(s) 43, 112, 286, 430
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 2 cut(s) 334, 435
Bst4CI ACNGT 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 155
BstAUI TGTACA 2 cut(s) 342, 423
BstC8I GCNNGC 3 cut(s) 275, 279, 331
BstDEI CTNAG 2 cut(s) 290, 416
BstDSI CCRYGG 2 cut(s) 175, 435
BstF5I GGATG 1 cut(s) 162
BstFNI CGCG 4 cut(s) 168, 177, 186, 277
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 2 cut(s) 188, 273
BstKTI GATC 4 cut(s) 46, 115, 289, 433
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 4 cut(s) 43, 112, 286, 430
BstMWI GCNNNNNNNGC 4 cut(s) 140, 174, 183, 306
BstNSI RCATGY 1 cut(s) 424
BstSLI GKGCMC 1 cut(s) 136
BstUI CGCG 4 cut(s) 168, 177, 186, 277
BstX2I RGATCY 2 cut(s) 112, 430
BstXI CCANNNNNNTGG 1 cut(s) 71
BstYI RGATCY 2 cut(s) 112, 430
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 2 cut(s) 175, 435
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 3 cut(s) 275, 279, 331
CfoI GCGC 2 cut(s) 188, 273
Cfr13I GGNCC 2 cut(s) 132, 133
Cfr42I CCGCGG 1 cut(s) 178
CseI GACGC 1 cut(s) 149
Csp6I GTAC 3 cut(s) 182, 343, 424
CviAII CATG 2 cut(s) 421, 436
CviJI RGCY 8 cut(s) 63, 134, 160, 261, 300, 309, 333, 350
CviKI_1 RGCY 8 cut(s) 63, 134, 160, 261, 300, 309, 333, 350
CviQI GTAC 3 cut(s) 182, 343, 424
DdeI CTNAG 2 cut(s) 290, 416
DpnI GATC 4 cut(s) 45, 114, 288, 432
DpnII GATC 4 cut(s) 43, 112, 286, 430
Eco130I CCWWGG 2 cut(s) 334, 435
Eco24I GRGCYC 1 cut(s) 136
EcoT14I CCWWGG 2 cut(s) 334, 435
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 2 cut(s) 334, 435
FaeI CATG 2 cut(s) 424, 439
FaiI YATR 8 cut(s) 13, 48, 84, 146, 392, 422, 437, 476
FaqI GGGAC 1 cut(s) 183
FatI CATG 2 cut(s) 420, 435
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 178
FokI GGATG 1 cut(s) 149
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 178
FspBI CTAG 3 cut(s) 30, 110, 330
GlaI GCGC 2 cut(s) 187, 272
GluI GCNGC 1 cut(s) 178
GsaI CCCAGC 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 1 cut(s) 134
HapII CCGG 1 cut(s) 191
HgaI GACGC 1 cut(s) 149
HhaI GCGC 2 cut(s) 188, 273
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 2 cut(s) 424, 439
Hin6I GCGC 2 cut(s) 186, 271
HinP1I GCGC 2 cut(s) 186, 271
HpaII CCGG 1 cut(s) 191
HphI GGTGA 1 cut(s) 48
Hpy188III TCNNGA 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 174, 183, 306
HpyF3I CTNAG 2 cut(s) 290, 416
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 2 cut(s) 424, 439
HspAI GCGC 2 cut(s) 186, 271
Ksp22I TGATCA 1 cut(s) 43
KspI CCGCGG 1 cut(s) 178
Kzo9I GATC 4 cut(s) 43, 112, 286, 430
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 4 cut(s) 73, 204, 247, 415
MaeI CTAG 3 cut(s) 30, 110, 330
MaeIII GTNAC 3 cut(s) 3, 94, 103
MalI GATC 4 cut(s) 45, 114, 288, 432
MboI GATC 4 cut(s) 43, 112, 286, 430
MboII GAAGA 2 cut(s) 457, 468
MflI RGATCY 2 cut(s) 112, 430
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 2 cut(s) 85, 481
MnlI CCTC 4 cut(s) 132, 182, 378, 425
MseI TTAA 2 cut(s) 156, 484
MslI CAYNNNNRTG 1 cut(s) 10
MspA1I CMGCKG 1 cut(s) 177
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 191
MvnI CGCG 4 cut(s) 168, 177, 186, 277
MwoI GCNNNNNNNGC 4 cut(s) 140, 174, 183, 306
NcoI CCATGG 1 cut(s) 435
NdeII GATC 4 cut(s) 43, 112, 286, 430
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 2 cut(s) 424, 439
NlaIV GGNNCC 3 cut(s) 76, 134, 432
NmuCI GTSAC 2 cut(s) 3, 103
NspI RCATGY 1 cut(s) 424
PcsI WCGNNNNNNNCGW 1 cut(s) 99
Pfl23II CGTACG 1 cut(s) 181
PkrI GCNGC 1 cut(s) 179
PspFI CCCAGC 1 cut(s) 59
PspLI CGTACG 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 76, 134, 432
PspOMI GGGCCC 1 cut(s) 132
PspPI GGNCC 2 cut(s) 132, 133
PsuI RGATCY 2 cut(s) 112, 430
RsaI GTAC 3 cut(s) 183, 344, 425
RsaNI GTAC 3 cut(s) 182, 343, 424
RseI CAYNNNNRTG 1 cut(s) 10
SacII CCGCGG 1 cut(s) 178
SaqAI TTAA 2 cut(s) 156, 484
SatI GCNGC 1 cut(s) 178
Sau3AI GATC 4 cut(s) 43, 112, 286, 430
Sau96I GGNCC 2 cut(s) 132, 133
SduI GDGCHC 1 cut(s) 136
SetI ASST 4 cut(s) 162, 174, 302, 311
Sfr303I CCGCGG 1 cut(s) 178
SgrBI CCGCGG 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 2 cut(s) 85, 481
SsiI CCGC 4 cut(s) 166, 175, 177, 453
SspMI CTAG 3 cut(s) 30, 110, 330
StyI CCWWGG 2 cut(s) 334, 435
TaaI ACNGT 1 cut(s) 103
TasI AATT 2 cut(s) 85, 481
TatI WGTACW 2 cut(s) 342, 423
TauI GCSGC 1 cut(s) 180
Tru1I TTAA 2 cut(s) 156, 484
Tru9I TTAA 2 cut(s) 156, 484
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 2 cut(s) 3, 103
Tsp45I GTSAC 2 cut(s) 3, 103
TspRI CASTG 1 cut(s) 409
Vha464I CTTAAG 1 cut(s) 155
XceI RCATGY 1 cut(s) 424
XspI CTAG 3 cut(s) 30, 110, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.