Prupe.5G219100_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000255
Physical Location & Seq
Reverse (-)
17115634 .. 17118062
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G219100.1

Sequence Viewer

Length: 2094 bp
ATGGCTCCTCCAAGTCTTCTTCTTGGTCCCCCAGAGTTCAGAAAGCCAGAGCCAATCGCAGCAGCAACCCAAACCCAATCGACTGACCCCTTCGTTGACCTCATGGTTGCCAATTACAACGACTCAGCCAAGGCTCCAATTATCGCACCTCCGATGGGCTTCACTGAGAACCGATCTGCCACGTTTCTCTCCTCCGGCAACCCCTGCGTCGATTTCTTCTTCCATGTTGTGCCATCCACGCCGGCCTCCTATTTCAACCAACAACTCCCTCTCGCCTGGGCCCACGACGACCTAACCACCCTCAAGCTCATCTGCAACCTCAGAGGCGTGCGCGGCACTGGAAAGTCCGACAAGGAAGGCTTCTACACGGCGGCGTTTTGGCTCCACAAGCACCATCCCAAAACCCTCGCCTGCAACGTTGCGTCTCTAGCCGAGTTTGGGTATTTCAAAGATCTGCCTGAGATCCTGTACCGCCTTCTACAAGGCGAAGACGTGAGGAAGACCCAAAAGGCCGAGTGGTCGATGAGAAAAGGCGGGGCGTGTAGGATTGGTAGGCGTGGTAGGCGGGGGCTAAATCATCTGAGACCACCCTACAGAGGTGGTGTTGCACCCTGCGGAGGTAGCGTTTCACCATCACCACCCTACTACGGAGGTGGCTTTGCACCACCAGCACCCTACGGAGGTGGCCCCTATGGGTTGAGACCACCCTTCGGGGGCGGGCTCAGGTCAAGTAGCAGTGCGGTGAAGGGGCGTCGGTCAAGTAATCGGAAAGGGGATGTGCAATCTAGAGAGGCCCGGATAAAAAGGGCAATGGAAAGGGCACAATTGGAGAAGGAAAAGGCGAGCTCTTTGAGAAGAGAGAAGAAGAGCAGCATGGCCCAGAAAGCCCTTGGGAGGTACCAACGTGACCCAGATTTCCGGTTTCTGTACGAGCGTGTTTCAGATCTTTTCGCCGAGTGTTTGAAGTCCGATATTGAAAACTTCAACTCCAATCAGTACAAGAAGATAACCCTGGCAGCCAAGTGGTGTCCTTCTATCGATTCATCCTTCGACCGAGCCACTTTGCTATGCGAAAGCATCGCCAGGAAGGTCTTCCCGCGAGAATCATACCCAGAATATGAAGGTGTTGAGGACGCCCATTACGCCTACAGAGTCCGAGACCGGCTGAGGAAGGATGTGTTGGTGCCGTTGAGGAAGGTGTTGGAGTTGCCAGAGGTTTATATAGGTGCCAACCAGTGGGGTTCCATTCCTTACAACCGAGTGGCCTCTGTGGCCATGAAGTTTTACAAGGAGAAGTTCCTTAAGCATGATGAAGAGAGGTTTAAGAAGTATTTGGAGGACGTCAAAGCCGGCAAGTCCACCATTGCAGCAGGTGCTTTGCTTCCACATGAGATCATAGAGTCTCTGAATCATGGAGATGGCGGGCAAGTGGCTGAGCTTCAGTGGAAGAGAATGGTGGATGACATGCAGAAGCAAGGCAAGATGAACAACTGCTTGGCTGTATGTGACGTCTCTGGAAGCATGAATGGGACACCCATGGAGGTGTCGGTGGCTTTGGGACTGTTGGTGTCTGAACTGAGTGAAGAGCCATGGAAGGGAAAGGTCATCACTTTCAGTGCAAGACCTGAGCTTCATTTGATACAAGGCGGTGATCTTATGTCCAAGTGCGAGTTTGTGAGGACGATGGAATGGGGCGGGAACACTAATTTTCAAAAGGTGTTTGATTTGCTTCTGCAAGTGGCAGTGAAGGGGAGACTGAAGCCAGAGCATATGATAAAGAGGATCTTCGTGTTCAGCGACATGGAGTTTGATCAGGCTTCAACCAATAGGTGGGAGACTGATTATCAGACAATTCAGAGGAAGTATAATAAGAAAGGATATGGGAATGCCATACCGCAGATTGTGTTTTGGAATCTAAGGCACTCTTTGTCTACGCCAGTGCCTAGCACACAACCAGGGGTGGCGCTGTTGAGTGGCTATTCGAAGAATTTGATGAAGTTGTTCTTGGATAATGATGGAGAAGTTCGCCCAGACAGTGTCATGGAACAAGCCCTCTCCGGCGAAGAATATCAGAAGTTGCTTGTGCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

698

Amino Acids

78.28

Weight (kDa)

9.26

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1361
AatII GACGTC 2 cut(s) 1344, 1512
Acc36I ACCTGC 1 cut(s) 1361
Acc65I GGTACC 1 cut(s) 897
AccB1I GGYRCC 3 cut(s) 897, 1183, 1226
AccB7I CCANNNNNTGG 2 cut(s) 1236, 1830
AccI GTMKAC 1 cut(s) 1931
AccII CGCG 2 cut(s) 333, 1099
AclI AACGTT 1 cut(s) 417
AclWI GGATC 2 cut(s) 457, 1790
AcoI YGGCCR 1 cut(s) 1272
AcsI RAATTY 1 cut(s) 1987
AcuI CTGAAG 2 cut(s) 1424, 1778
AcyI GRCGYC 4 cut(s) 751, 1134, 1341, 1509
AfaI GTAC 4 cut(s) 470, 899, 929, 998
AflII CTTAAG 1 cut(s) 1301
AgsI TTSAA 7 cut(s) 256, 448, 964, 977, 985, 1712, 1821
AjiI CACGTC 1 cut(s) 493
AjnI CCWGG 4 cut(s) 275, 1011, 1082, 1954
AjuI GAANNNNNNNTTGG 6 cut(s) 1163, 1195, 1478, 1510, 1988, 2020
AluBI AGCT 4 cut(s) 307, 846, 1438, 1630
AluI AGCT 4 cut(s) 307, 846, 1438, 1630
Alw21I GWGCWC 1 cut(s) 848
Alw26I GTCTC 8 cut(s) 429, 577, 694, 1152, 1407, 1516, 1747, 1829
AlwI GGATC 2 cut(s) 457, 1790
AoxI GGCC 8 cut(s) 243, 279, 510, 685, 792, 876, 1263, 1272
ApaI GGGCCC 1 cut(s) 283
ApeKI GCWGC 5 cut(s) 59, 62, 870, 1016, 1367
ApoI RAATTY 1 cut(s) 1987
ArsI GACNNNNNNTTYG 2 cut(s) 1790, 1822
Asp700I GAANNNNTTC 2 cut(s) 1091, 2000
Asp718I GGTACC 1 cut(s) 897
AspLEI GCGC 2 cut(s) 333, 1966
AspS9I GGNCC 6 cut(s) 26, 279, 280, 686, 793, 877
AsuC2I CCSGG 1 cut(s) 796
AsuHPI GGTGA 4 cut(s) 621, 627, 754, 1661
AsuII TTCGAA 1 cut(s) 1982
AvaII GGWCC 1 cut(s) 26
BaeGI GKGCMC 2 cut(s) 283, 823
BaeI ACNNNNGTAYC 2 cut(s) 889, 922
BalI TGGCCA 1 cut(s) 1274
BanI GGYRCC 3 cut(s) 897, 1183, 1226
BanII GRGCYC 3 cut(s) 283, 723, 848
BbsI GAAGAC 4 cut(s) 8, 495, 506, 1084
Bbv12I GWGCWC 1 cut(s) 848
BbvCI CCTCAGC 1 cut(s) 1166
BbvI GCAGC 5 cut(s) 71, 74, 882, 1028, 1379
BccI CCATC 7 cut(s) 148, 241, 402, 640, 1412, 1678, 2009
BceAI ACGGC 2 cut(s) 384, 1171
BciT130I CCWGG 4 cut(s) 277, 1013, 1084, 1956
BclI TGATCA 1 cut(s) 1810
BcnI CCSGG 1 cut(s) 796
BcoDI GTCTC 8 cut(s) 429, 577, 694, 1152, 1407, 1516, 1747, 1829
BfaI CTAG 3 cut(s) 428, 786, 1944
BfmI CTRYAG 2 cut(s) 592, 1147
BfoI RGCGCY 1 cut(s) 1967
BfrI CTTAAG 1 cut(s) 1301
BfuAI ACCTGC 1 cut(s) 1361
BglI GCCNNNNNGGC 1 cut(s) 1271
BglII AGATCT 2 cut(s) 451, 943
BisI GCNGC 7 cut(s) 60, 63, 334, 372, 871, 1017, 1368
BlpI GCTNAGC 1 cut(s) 1434
BlsI GCNGC 7 cut(s) 61, 64, 335, 373, 872, 1018, 1369
Bme1390I CCNGG 5 cut(s) 277, 796, 1013, 1084, 1956
Bme18I GGWCC 1 cut(s) 26
BmgBI CACGTC 1 cut(s) 493
BmgT120I GGNCC 6 cut(s) 26, 279, 280, 686, 793, 877
BmrFI CCNGG 5 cut(s) 277, 796, 1013, 1084, 1956
BmsI GCATC 1 cut(s) 1086
BpiI GAAGAC 4 cut(s) 8, 495, 506, 1084
Bpu10I CCTNAGC 3 cut(s) 722, 1166, 1626
Bpu1102I GCTNAGC 1 cut(s) 1434
Bpu14I TTCGAA 1 cut(s) 1982
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 796
Bsa29I ATCGAT 1 cut(s) 1038
BsaHI GRCGYC 4 cut(s) 751, 1134, 1341, 1509
BsaI GGTCTC 3 cut(s) 577, 694, 1152
BsaJI CCNNGG 7 cut(s) 129, 276, 889, 1011, 1536, 1589, 1955
BsaWI WCCGGW 1 cut(s) 918
BsaXI ACNNNNNCTCC 4 cut(s) 609, 639, 971, 1001
Bse118I RCCGGY 3 cut(s) 241, 1161, 1349
Bse1I ACTGG 3 cut(s) 343, 1234, 1937
Bse3DI GCAATG 2 cut(s) 816, 1362
BseBI CCWGG 4 cut(s) 277, 1013, 1084, 1956
BseCI ATCGAT 1 cut(s) 1038
BseDI CCNNGG 7 cut(s) 129, 276, 889, 1011, 1536, 1589, 1955
BseGI GGATG 6 cut(s) 233, 394, 781, 1043, 1180, 1465
BseMI GCAATG 2 cut(s) 816, 1362
BseNI ACTGG 3 cut(s) 343, 1234, 1937
BseRI GAGGAG 1 cut(s) 181
BseSI GKGCMC 2 cut(s) 283, 823
BseXI GCAGC 5 cut(s) 71, 74, 882, 1028, 1379
Bsh1236I CGCG 2 cut(s) 333, 1099
Bsh1285I CGRYCG 1 cut(s) 1054
BshFI GGCC 8 cut(s) 245, 281, 512, 687, 794, 878, 1265, 1274
BshNI GGYRCC 3 cut(s) 897, 1183, 1226
BshVI ATCGAT 1 cut(s) 1038
BsiEI CGRYCG 1 cut(s) 1054
BsiHKAI GWGCWC 1 cut(s) 848
BsiSI CCGG 7 cut(s) 195, 242, 796, 919, 1162, 1350, 2058
BslFI GGGAC 3 cut(s) 12, 1543, 1572
BsmAI GTCTC 8 cut(s) 429, 577, 694, 1152, 1407, 1516, 1747, 1829
BsmBI CGTCTC 2 cut(s) 429, 1516
BsmFI GGGAC 3 cut(s) 12, 1543, 1572
BsmI GAATGC 1 cut(s) 1891
BsnI GGCC 8 cut(s) 245, 281, 512, 687, 794, 878, 1265, 1274
Bso31I GGTCTC 3 cut(s) 577, 694, 1152
Bsp119I TTCGAA 1 cut(s) 1982
Bsp120I GGGCCC 1 cut(s) 279
Bsp1286I GDGCHC 4 cut(s) 283, 723, 823, 848
Bsp143I GATC 8 cut(s) 173, 451, 462, 943, 1392, 1651, 1782, 1810
Bsp1720I GCTNAGC 1 cut(s) 1434
Bsp19I CCATGG 2 cut(s) 1536, 1589
BspANI GGCC 8 cut(s) 245, 281, 512, 687, 794, 878, 1265, 1274
BspDI ATCGAT 1 cut(s) 1038
BspFNI CGCG 2 cut(s) 333, 1099
BspMI ACCTGC 1 cut(s) 1361
BspPI GGATC 2 cut(s) 457, 1790
BspQI GCTCTTC 2 cut(s) 860, 1578
BspT104I TTCGAA 1 cut(s) 1982
BspT107I GGYRCC 3 cut(s) 897, 1183, 1226
BspTI CTTAAG 1 cut(s) 1301
BspTNI GGTCTC 3 cut(s) 577, 694, 1152
BsrDI GCAATG 2 cut(s) 816, 1362
BsrFI RCCGGY 3 cut(s) 241, 1161, 1349
BsrI ACTGG 3 cut(s) 343, 1234, 1937
BssAI RCCGGY 3 cut(s) 241, 1161, 1349
BssECI CCNNGG 7 cut(s) 129, 276, 889, 1011, 1536, 1589, 1955
BssMI GATC 8 cut(s) 173, 451, 462, 943, 1392, 1651, 1782, 1810
BssNI GRCGYC 4 cut(s) 751, 1134, 1341, 1509
BssT1I CCWWGG 4 cut(s) 129, 889, 1536, 1589
Bst2UI CCWGG 4 cut(s) 277, 1013, 1084, 1956
Bst4CI ACNGT 2 cut(s) 1563, 2036
Bst6I CTCTTC 5 cut(s) 850, 860, 1308, 1442, 1578
BstACI GRCGYC 4 cut(s) 751, 1134, 1341, 1509
BstAFI CTTAAG 1 cut(s) 1301
BstAPI GCANNNNNTGC 2 cut(s) 204, 1373
BstBI TTCGAA 1 cut(s) 1982
BstC8I GCNNGC 7 cut(s) 243, 329, 412, 719, 844, 1351, 1424
BstDSI CCRYGG 2 cut(s) 1536, 1589
BstF5I GGATG 6 cut(s) 233, 394, 781, 1043, 1180, 1465
BstFNI CGCG 2 cut(s) 333, 1099
BstH2I RGCGCY 1 cut(s) 1967
BstHHI GCGC 2 cut(s) 333, 1966
BstKTI GATC 8 cut(s) 176, 454, 465, 946, 1395, 1654, 1785, 1813
BstMAI GTCTC 8 cut(s) 429, 577, 694, 1152, 1407, 1516, 1747, 1829
BstMBI GATC 8 cut(s) 173, 451, 462, 943, 1392, 1651, 1782, 1810
BstMCI CGRYCG 1 cut(s) 1054
BstNI CCWGG 4 cut(s) 277, 1013, 1084, 1956
BstNSI RCATGY 1 cut(s) 1468
BstSCI CCNGG 5 cut(s) 275, 794, 1011, 1082, 1954
BstSFI CTRYAG 2 cut(s) 592, 1147
BstSLI GKGCMC 2 cut(s) 283, 823
BstUI CGCG 2 cut(s) 333, 1099
BstV1I GCAGC 5 cut(s) 71, 74, 882, 1028, 1379
BstV2I GAAGAC 4 cut(s) 8, 495, 506, 1084
BstX2I RGATCY 4 cut(s) 451, 462, 943, 1782
BstYI RGATCY 4 cut(s) 451, 462, 943, 1782
Bsu15I ATCGAT 1 cut(s) 1038
BsuRI GGCC 8 cut(s) 245, 281, 512, 687, 794, 878, 1265, 1274
BsuTUI ATCGAT 1 cut(s) 1038
BtgI CCRYGG 2 cut(s) 1536, 1589
BtgZI GCGATG 1 cut(s) 1063
BtrI CACGTC 1 cut(s) 493
BtsCI GGATG 6 cut(s) 233, 394, 781, 1043, 1180, 1465
BtsI GCAGTG 2 cut(s) 742, 1749
BtsIMutI CAGTG 9 cut(s) 162, 336, 742, 1241, 1448, 1621, 1749, 1944, 2041
BveI ACCTGC 1 cut(s) 1361
Cac8I GCNNGC 7 cut(s) 243, 329, 412, 719, 844, 1351, 1424
CfoI GCGC 2 cut(s) 333, 1966
Cfr10I RCCGGY 3 cut(s) 241, 1161, 1349
Cfr13I GGNCC 6 cut(s) 26, 279, 280, 686, 793, 877
ClaI ATCGAT 1 cut(s) 1038
CseI GACGC 4 cut(s) 196, 411, 740, 1142
Csp6I GTAC 4 cut(s) 469, 898, 928, 997
CviQI GTAC 4 cut(s) 469, 898, 928, 997
DpnI GATC 8 cut(s) 175, 453, 464, 945, 1394, 1653, 1784, 1812
DpnII GATC 8 cut(s) 173, 451, 462, 943, 1392, 1651, 1782, 1810
EaeI YGGCCR 1 cut(s) 1272
Eam1104I CTCTTC 5 cut(s) 850, 860, 1308, 1442, 1578
EarI CTCTTC 5 cut(s) 850, 860, 1308, 1442, 1578
Ecl136II GAGCTC 1 cut(s) 846
Eco130I CCWWGG 4 cut(s) 129, 889, 1536, 1589
Eco24I GRGCYC 3 cut(s) 283, 723, 848
Eco31I GGTCTC 3 cut(s) 577, 694, 1152
Eco47I GGWCC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 846
Eco57I CTGAAG 2 cut(s) 1424, 1778
EcoICRI GAGCTC 1 cut(s) 846
EcoRII CCWGG 4 cut(s) 275, 1011, 1082, 1954
EcoT14I CCWWGG 4 cut(s) 129, 889, 1536, 1589
EcoT38I GRGCYC 3 cut(s) 283, 723, 848
ErhI CCWWGG 4 cut(s) 129, 889, 1536, 1589
Esp3I CGTCTC 2 cut(s) 429, 1516
FalI AAGNNNNNCTT 8 cut(s) 344, 376, 1769, 1801, 1909, 1941, 1988, 2020
FaqI GGGAC 3 cut(s) 12, 1543, 1572
FauI CCCGC 6 cut(s) 527, 558, 710, 1104, 1415, 1688
FauNDI CATATG 1 cut(s) 1770
FbaI TGATCA 1 cut(s) 1810
FblI GTMKAC 1 cut(s) 1931
Fnu4HI GCNGC 7 cut(s) 60, 63, 334, 372, 871, 1017, 1368
FokI GGATG 6 cut(s) 220, 381, 788, 1030, 1187, 1472
FriOI GRGCYC 3 cut(s) 283, 723, 848
Fsp4HI GCNGC 7 cut(s) 60, 63, 334, 372, 871, 1017, 1368
FspBI CTAG 3 cut(s) 428, 786, 1944
GlaI GCGC 2 cut(s) 332, 1965
GluI GCNGC 7 cut(s) 60, 63, 334, 372, 871, 1017, 1368
HaeII RGCGCY 1 cut(s) 1967
HaeIII GGCC 8 cut(s) 245, 281, 512, 687, 794, 878, 1265, 1274
HapII CCGG 7 cut(s) 195, 242, 796, 919, 1162, 1350, 2058
HgaI GACGC 4 cut(s) 196, 411, 740, 1142
HhaI GCGC 2 cut(s) 333, 1966
Hin1I GRCGYC 4 cut(s) 751, 1134, 1341, 1509
Hin6I GCGC 2 cut(s) 331, 1964
HinP1I GCGC 2 cut(s) 331, 1964
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HinfI GANTC 7 cut(s) 122, 1040, 1103, 1152, 1400, 1408, 1912
HpaII CCGG 7 cut(s) 195, 242, 796, 919, 1162, 1350, 2058
HphI GGTGA 4 cut(s) 621, 627, 754, 1661
Hpy166II GTNNAC 3 cut(s) 97, 1359, 1932
Hpy188III TCNNGA 2 cut(s) 786, 1515
Hpy8I GTNNAC 3 cut(s) 97, 1359, 1932
Hpy99I CGWCG 3 cut(s) 212, 290, 756
HpyCH4III ACNGT 2 cut(s) 1563, 2036
HpyCH4IV ACGT 6 cut(s) 182, 417, 492, 904, 1341, 1509
HpyCH4V TGCA 9 cut(s) 315, 414, 608, 662, 781, 1367, 1468, 1619, 1735
HpySE526I ACGT 6 cut(s) 182, 417, 492, 904, 1341, 1509
Hsp92I GRCGYC 4 cut(s) 751, 1134, 1341, 1509
HspAI GCGC 2 cut(s) 331, 1964
KpnI GGTACC 1 cut(s) 901
KroI GCCGGC 2 cut(s) 241, 1349
KroNI GCCGGC 2 cut(s) 243, 1351
Ksp22I TGATCA 1 cut(s) 1810
Kzo9I GATC 8 cut(s) 173, 451, 462, 943, 1392, 1651, 1782, 1810
LguI GCTCTTC 2 cut(s) 860, 1578
LmnI GCTCC 3 cut(s) 10, 139, 387
Lsp1109I GCAGC 5 cut(s) 71, 74, 882, 1028, 1379
LweI GCATC 1 cut(s) 1086
MaeI CTAG 3 cut(s) 428, 786, 1944
MaeII ACGT 6 cut(s) 182, 417, 492, 904, 1341, 1509
MaeIII GTNAC 2 cut(s) 905, 1505
MalI GATC 8 cut(s) 175, 453, 464, 945, 1394, 1653, 1784, 1812
MboI GATC 8 cut(s) 173, 451, 462, 943, 1392, 1651, 1782, 1810
MfeI CAATTG 1 cut(s) 824
MflI RGATCY 4 cut(s) 451, 462, 943, 1782
MhlI GDGCHC 4 cut(s) 283, 723, 823, 848
MlsI TGGCCA 1 cut(s) 1274
MluCI AATT 6 cut(s) 112, 138, 824, 1705, 1851, 1987
MluNI TGGCCA 1 cut(s) 1274
MlyI GAGTC 3 cut(s) 116, 1161, 1409
MmeI TCCRAC 2 cut(s) 372, 1182
Mox20I TGGCCA 1 cut(s) 1274
MroNI GCCGGC 2 cut(s) 241, 1349
MroXI GAANNNNTTC 2 cut(s) 1091, 2000
MscI TGGCCA 1 cut(s) 1274
MseI TTAA 2 cut(s) 1302, 1323
MslI CAYNNNNRTG 2 cut(s) 1416, 1541
Msp20I TGGCCA 1 cut(s) 1274
MspCI CTTAAG 1 cut(s) 1301
MspI CCGG 7 cut(s) 195, 242, 796, 919, 1162, 1350, 2058
MspR9I CCNGG 5 cut(s) 277, 796, 1013, 1084, 1956
MunI CAATTG 1 cut(s) 824
Mva1269I GAATGC 1 cut(s) 1891
MvaI CCWGG 4 cut(s) 277, 1013, 1084, 1956
MvnI CGCG 2 cut(s) 333, 1099
NaeI GCCGGC 2 cut(s) 243, 1351
NciI CCSGG 1 cut(s) 796
NcoI CCATGG 2 cut(s) 1536, 1589
NdeI CATATG 1 cut(s) 1770
NdeII GATC 8 cut(s) 173, 451, 462, 943, 1392, 1651, 1782, 1810
NgoMIV GCCGGC 2 cut(s) 241, 1349
NmeAIII GCCGAG 3 cut(s) 457, 538, 979
NmuCI GTSAC 2 cut(s) 905, 1505
NspI RCATGY 1 cut(s) 1468
NspV TTCGAA 1 cut(s) 1982
PaqCI CACCTGC 1 cut(s) 1361
PciSI GCTCTTC 2 cut(s) 860, 1578
PcsI WCGNNNNNNNCGW 2 cut(s) 414, 1794
PctI GAATGC 1 cut(s) 1891
PdiI GCCGGC 2 cut(s) 243, 1351
PdmI GAANNNNTTC 2 cut(s) 1091, 2000
PfeI GAWTC 4 cut(s) 1040, 1103, 1408, 1912
PflFI GACNNNGTC 1 cut(s) 2036
PflMI CCANNNNNTGG 2 cut(s) 1236, 1830
PkrI GCNGC 7 cut(s) 61, 64, 335, 373, 872, 1018, 1369
PleI GAGTC 3 cut(s) 116, 1160, 1408
PpsI GAGTC 3 cut(s) 116, 1160, 1408
Psp124BI GAGCTC 1 cut(s) 848
Psp1406I AACGTT 1 cut(s) 417
Psp6I CCWGG 4 cut(s) 275, 1011, 1082, 1954
PspGI CCWGG 4 cut(s) 275, 1011, 1082, 1954
PspOMI GGGCCC 1 cut(s) 279
PspPI GGNCC 6 cut(s) 26, 279, 280, 686, 793, 877
PsuI RGATCY 4 cut(s) 451, 462, 943, 1782
PsyI GACNNNGTC 1 cut(s) 2036
RsaI GTAC 4 cut(s) 470, 899, 929, 998
RsaNI GTAC 4 cut(s) 469, 898, 928, 997
RseI CAYNNNNRTG 2 cut(s) 1416, 1541
SacI GAGCTC 1 cut(s) 848
SapI GCTCTTC 2 cut(s) 860, 1578
SaqAI TTAA 2 cut(s) 1302, 1323
SatI GCNGC 7 cut(s) 60, 63, 334, 372, 871, 1017, 1368
Sau3AI GATC 8 cut(s) 173, 451, 462, 943, 1392, 1651, 1782, 1810
Sau96I GGNCC 6 cut(s) 26, 279, 280, 686, 793, 877
SchI GAGTC 3 cut(s) 116, 1161, 1409
ScrFI CCNGG 5 cut(s) 277, 796, 1013, 1084, 1956
SduI GDGCHC 4 cut(s) 283, 723, 823, 848
SfaNI GCATC 1 cut(s) 1086
SfcI CTRYAG 2 cut(s) 592, 1147
SfiI GGCCNNNNNGGCC 1 cut(s) 1271
SfuI TTCGAA 1 cut(s) 1982
SinI GGWCC 1 cut(s) 26
SmiMI CAYNNNNRTG 2 cut(s) 1416, 1541
SmlI CTYRAG 2 cut(s) 302, 1301
SmoI CTYRAG 2 cut(s) 302, 1301
Sse9I AATT 6 cut(s) 112, 138, 824, 1705, 1851, 1987
SspMI CTAG 3 cut(s) 428, 786, 1944
SstI GAGCTC 1 cut(s) 848
StyD4I CCNGG 5 cut(s) 275, 794, 1011, 1082, 1954
StyI CCWWGG 4 cut(s) 129, 889, 1536, 1589
TaaI ACNGT 2 cut(s) 1563, 2036
TaiI ACGT 6 cut(s) 185, 420, 495, 907, 1344, 1512
TaqI TCGA 6 cut(s) 80, 210, 521, 1038, 1050, 1982
TaqII GACCGA 2 cut(s) 744, 1068
TasI AATT 6 cut(s) 112, 138, 824, 1705, 1851, 1987
TatI WGTACW 1 cut(s) 996
TauI GCSGC 2 cut(s) 336, 374
TfiI GAWTC 4 cut(s) 1040, 1103, 1408, 1912
Tru1I TTAA 2 cut(s) 1302, 1323
Tru9I TTAA 2 cut(s) 1302, 1323
TscAI CASTG 9 cut(s) 169, 343, 742, 1241, 1448, 1621, 1749, 1944, 2041
TseFI GTSAC 2 cut(s) 905, 1505
TseI GCWGC 5 cut(s) 59, 62, 870, 1016, 1367
Tsp45I GTSAC 2 cut(s) 905, 1505
TspDTI ATGAA 8 cut(s) 1032, 1134, 1292, 1326, 1499, 1538, 1622, 2009
TspGWI ACGGA 2 cut(s) 663, 693
TspRI CASTG 9 cut(s) 169, 343, 742, 1241, 1448, 1621, 1749, 1944, 2041
Tth111I GACNNNGTC 1 cut(s) 2036
Van91I CCANNNNNTGG 2 cut(s) 1236, 1830
Vha464I CTTAAG 1 cut(s) 1301
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 1987
XbaI TCTAGA 1 cut(s) 785
XceI RCATGY 1 cut(s) 1468
XcmI CCANNNNNNNNNTGG 1 cut(s) 887
XmiI GTMKAC 1 cut(s) 1931
XmnI GAANNNNTTC 2 cut(s) 1091, 2000
XspI CTAG 3 cut(s) 428, 786, 1944
ZraI GACGTC 2 cut(s) 1342, 1510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.