Rorug01G0043400

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000255
Physical Location & Seq
Forward (+)
7200185 .. 7201192
1008 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0043400.1

Sequence Viewer

Length: 1008 bp
ATGGGCTTTTCACCATTCTTCCCAAACCCTCTGTTTCATCCTGTCAAAAACCCTAACAAGCGTCGTGCTTCACCGCCACCAAGTAAGAAGCAAAAGGTAGCTGATGATGAGATCGACACAGATCAAGAAGGCATTGAGCAACTCCGCGACGTCGTTTCTGTCAGTGGAGTCAATCTTGTGGAAGAGCAAGAGCGCATGCTGTTGCTTTCGGGGCCCAAGAAGCAGCAAGCATCTCGAAAACTTGTGTTTCAAGAAAACCAAGAAGGGCTGGTTTTGCAGAAGATTCCCCTGCAGAAAAAGTTGGCGGGAATCATGGGGAGGTGCGGTTTGAGAATTGGTGTAGACAAAGATGTGGAGAGATGCTTGTCAATGTGTGTGGAGGAGAGAATGAGGGGGATCATATGCAATTTGATTAGACAGTCGAAGCAGCGGGTTGATTGCGAAAAATCGAGACACCACACTGTTTCTACATCTGATGTGAAGCAAGAAATTATGATTCTCAACAAAAAAGCTAGGGAAGAATTGCAGGAAACGACTCAGAAGCTTAATGAAGCTAAGGTCAGCACTAATGGATTTGAGGGTGTTAAGGATAAACATGACGATGGAGATGACAAAATGAGGAGAAGTACAGCAGCAGCAAATGTTGCTGCCCTTGCTGCTCTTGGAGGACATGACATATTGGCGAAATGGCAACTTAAGGCGGATCAGCTGGCCCGGGAGAAGAGTCGAGGTAAAGATGTAATTCACAAGGCTACATCAACTGCTGGAAGAGCAATGAATGGCAATGTAGAAGCGGAGAAAAGGGGTGGTGTAGAAGCTTTGGCGTCTACAGCTGGAAGTGCTGTCGGAAAGTTTGGGAGGAATTGCCAAGTTATGATGATGCCTCAAACAAAGGTGGATGGTACTCGTGGTATATCTGTCAAGGATGTGATTGCTGTTCTGGAAAAGGAACCTCAGATGTCCAAGTCTACTCTGATCTATTTGCTAATGAACACTGCTAGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

335

Amino Acids

37.01

Weight (kDa)

9.45

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAF4 PF05236 48 - 327 2.3e-47 Transcription initiation factor TFIID component TAF4 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
AccI GTMKAC 3 cut(s) 342, 827, 968
AccII CGCG 1 cut(s) 147
AciI CCGC 7 cut(s) 74, 145, 305, 324, 430, 701, 794
AclWI GGATC 2 cut(s) 404, 711
AcyI GRCGYC 2 cut(s) 150, 824
AfaI GTAC 2 cut(s) 628, 904
AflII CTTAAG 1 cut(s) 695
AgsI TTSAA 1 cut(s) 251
AluBI AGCT 7 cut(s) 101, 512, 544, 554, 709, 818, 833
AluI AGCT 7 cut(s) 101, 512, 544, 554, 709, 818, 833
Alw26I GTCTC 1 cut(s) 445
AlwI GGATC 2 cut(s) 404, 711
Ama87I CYCGRG 1 cut(s) 714
AoxI GGCC 2 cut(s) 212, 711
ApaI GGGCCC 1 cut(s) 216
ApeKI GCWGC 6 cut(s) 223, 427, 632, 635, 647, 656
AspLEI GCGC 1 cut(s) 195
AspS9I GGNCC 3 cut(s) 212, 213, 712
AsuC2I CCSGG 2 cut(s) 715, 716
AsuHPI GGTGA 2 cut(s) 3, 63
AsuNHI GCTAGC 1 cut(s) 998
AvaI CYCGRG 1 cut(s) 714
BaeGI GKGCMC 1 cut(s) 216
BanII GRGCYC 1 cut(s) 216
BauI CACGAG 1 cut(s) 906
BbvI GCAGC 6 cut(s) 235, 439, 634, 643, 644, 647
BccI CCATC 2 cut(s) 596, 893
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BcnI CCSGG 2 cut(s) 715, 716
BcoDI GTCTC 1 cut(s) 445
BfaI CTAG 2 cut(s) 513, 999
BfmI CTRYAG 2 cut(s) 290, 828
BfrI CTTAAG 1 cut(s) 695
BisI GCNGC 6 cut(s) 224, 428, 633, 636, 648, 657
BlsI GCNGC 6 cut(s) 225, 429, 634, 637, 649, 658
Bme1390I CCNGG 2 cut(s) 715, 716
BmeT110I CYCGRG 1 cut(s) 714
BmgT120I GGNCC 3 cut(s) 212, 213, 712
BmiI GGNNCC 3 cut(s) 213, 214, 951
BmrFI CCNGG 2 cut(s) 715, 716
BmsI GCATC 3 cut(s) 239, 350, 870
BmtI GCTAGC 1 cut(s) 1002
Bpu10I CCTNAGC 1 cut(s) 555
BpuMI CCSGG 2 cut(s) 715, 716
BsaHI GRCGYC 2 cut(s) 150, 824
BsaJI CCNNGG 1 cut(s) 714
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bse118I RCCGGY 1 cut(s) 1002
Bse3DI GCAATG 2 cut(s) 780, 790
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 3 cut(s) 37, 904, 931
BseMI GCAATG 2 cut(s) 780, 790
BseMII CTCAG 2 cut(s) 551, 968
BseRI GAGGAG 2 cut(s) 395, 634
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 6 cut(s) 235, 439, 634, 643, 644, 647
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 2 cut(s) 214, 713
BsiHKCI CYCGRG 1 cut(s) 714
BsiSI CCGG 2 cut(s) 715, 1003
BsmAI GTCTC 1 cut(s) 445
BsnI GGCC 2 cut(s) 214, 713
BsoBI CYCGRG 1 cut(s) 714
Bsp120I GGGCCC 1 cut(s) 212
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 5 cut(s) 111, 121, 396, 703, 975
BspACI CCGC 7 cut(s) 74, 145, 305, 324, 430, 701, 794
BspANI GGCC 2 cut(s) 214, 713
BspCNI CTCAG 2 cut(s) 550, 967
BspFNI CGCG 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 213, 214, 951
BspMAI CTGCAG 1 cut(s) 294
BspOI GCTAGC 1 cut(s) 1002
BspPI GGATC 2 cut(s) 404, 711
BspQI GCTCTTC 2 cut(s) 177, 763
BspTI CTTAAG 1 cut(s) 695
BsrDI GCAATG 2 cut(s) 780, 790
BsrFI RCCGGY 1 cut(s) 1002
BssAI RCCGGY 1 cut(s) 1002
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 5 cut(s) 111, 121, 396, 703, 975
BssNI GRCGYC 2 cut(s) 150, 824
BssSI CACGAG 1 cut(s) 906
Bst2BI CACGAG 1 cut(s) 906
Bst4CI ACNGT 2 cut(s) 420, 463
Bst6I CTCTTC 3 cut(s) 177, 716, 763
BstACI GRCGYC 2 cut(s) 150, 824
BstAFI CTTAAG 1 cut(s) 695
BstAPI GCANNNNNTGC 1 cut(s) 644
BstC8I GCNNGC 4 cut(s) 197, 228, 711, 1000
BstDEI CTNAG 3 cut(s) 537, 555, 954
BstF5I GGATG 3 cut(s) 37, 904, 931
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 5 cut(s) 114, 124, 399, 706, 978
BstMAI GTCTC 1 cut(s) 445
BstMBI GATC 5 cut(s) 111, 121, 396, 703, 975
BstMWI GCNNNNNNNGC 9 cut(s) 211, 220, 274, 644, 653, 656, 770, 830, 839
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 713, 714
BstSFI CTRYAG 2 cut(s) 290, 828
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 6 cut(s) 235, 439, 634, 643, 644, 647
BsuRI GGCC 2 cut(s) 214, 713
BtsCI GGATG 3 cut(s) 37, 904, 931
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 3 cut(s) 169, 459, 993
Cac8I GCNNGC 4 cut(s) 197, 228, 711, 1000
CfoI GCGC 1 cut(s) 195
Cfr10I RCCGGY 1 cut(s) 1002
Cfr13I GGNCC 3 cut(s) 212, 213, 712
Cfr9I CCCGGG 1 cut(s) 714
CseI GACGC 2 cut(s) 50, 813
Csp6I GTAC 2 cut(s) 627, 903
CspCI CAANNNNNGTGG 2 cut(s) 357, 392
CviAII CATG 4 cut(s) 196, 313, 596, 671
CviQI GTAC 2 cut(s) 627, 903
DdeI CTNAG 3 cut(s) 537, 555, 954
DpnI GATC 5 cut(s) 113, 123, 398, 705, 977
DpnII GATC 5 cut(s) 111, 121, 396, 703, 975
Eam1104I CTCTTC 3 cut(s) 177, 716, 763
EarI CTCTTC 3 cut(s) 177, 716, 763
EciI GGCGGA 1 cut(s) 716
Eco24I GRGCYC 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 714
EcoO109I RGGNCCY 1 cut(s) 212
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 4 cut(s) 199, 316, 599, 674
FatI CATG 4 cut(s) 195, 312, 595, 670
FauI CCCGC 2 cut(s) 298, 423
FauNDI CATATG 1 cut(s) 401
FblI GTMKAC 3 cut(s) 342, 827, 968
Fnu4HI GCNGC 6 cut(s) 224, 428, 633, 636, 648, 657
FokI GGATG 3 cut(s) 24, 911, 938
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 6 cut(s) 224, 428, 633, 636, 648, 657
FspBI CTAG 2 cut(s) 513, 999
GlaI GCGC 1 cut(s) 194
GluI GCNGC 6 cut(s) 224, 428, 633, 636, 648, 657
HaeIII GGCC 2 cut(s) 214, 713
HapII CCGG 2 cut(s) 715, 1003
HgaI GACGC 2 cut(s) 50, 813
HhaI GCGC 1 cut(s) 195
Hin1I GRCGYC 2 cut(s) 150, 824
Hin1II CATG 4 cut(s) 199, 316, 599, 674
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HindIII AAGCTT 2 cut(s) 542, 816
HinfI GANTC 6 cut(s) 168, 283, 309, 496, 535, 724
HpaII CCGG 2 cut(s) 715, 1003
HphI GGTGA 2 cut(s) 3, 63
Hpy166II GTNNAC 3 cut(s) 343, 828, 969
Hpy188I TCNGA 5 cut(s) 475, 540, 848, 957, 975
Hpy188III TCNNGA 5 cut(s) 125, 234, 251, 450, 941
Hpy8I GTNNAC 3 cut(s) 343, 828, 969
Hpy99I CGWCG 3 cut(s) 66, 152, 155
HpyAV CCTTC 2 cut(s) 122, 257
HpyCH4III ACNGT 2 cut(s) 420, 463
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 277, 292, 405, 526
HpyF10VI GCNNNNNNNGC 9 cut(s) 211, 220, 274, 644, 653, 656, 770, 830, 839
HpyF3I CTNAG 3 cut(s) 537, 555, 954
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 2 cut(s) 150, 824
Hsp92II CATG 4 cut(s) 199, 316, 599, 674
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 5 cut(s) 111, 121, 396, 703, 975
LguI GCTCTTC 2 cut(s) 177, 763
LpnPI CCDG 9 cut(s) 54, 254, 302, 512, 695, 728, 750, 819, 926
Lsp1109I GCAGC 6 cut(s) 235, 439, 634, 643, 644, 647
LweI GCATC 3 cut(s) 239, 350, 870
MaeI CTAG 2 cut(s) 513, 999
MaeII ACGT 1 cut(s) 150
MalI GATC 5 cut(s) 113, 123, 398, 705, 977
MboI GATC 5 cut(s) 111, 121, 396, 703, 975
MboII GAAGA 6 cut(s) 10, 194, 292, 530, 733, 780
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 6 cut(s) 333, 406, 489, 521, 741, 862
MlyI GAGTC 3 cut(s) 177, 529, 733
MmeI TCCRAC 1 cut(s) 826
MseI TTAA 3 cut(s) 546, 585, 696
MslI CAYNNNNRTG 1 cut(s) 600
MspA1I CMGCKG 3 cut(s) 430, 709, 833
MspCI CTTAAG 1 cut(s) 695
MspI CCGG 2 cut(s) 715, 1003
MspR9I CCNGG 2 cut(s) 715, 716
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 9 cut(s) 211, 220, 274, 644, 653, 656, 770, 830, 839
NciI CCSGG 2 cut(s) 715, 716
NdeI CATATG 1 cut(s) 401
NdeII GATC 5 cut(s) 111, 121, 396, 703, 975
NheI GCTAGC 1 cut(s) 998
NlaIII CATG 4 cut(s) 199, 316, 599, 674
NlaIV GGNNCC 3 cut(s) 213, 214, 951
NspI RCATGY 1 cut(s) 199
PaeI GCATGC 1 cut(s) 199
PciSI GCTCTTC 2 cut(s) 177, 763
PfeI GAWTC 3 cut(s) 283, 309, 496
PkrI GCNGC 6 cut(s) 225, 429, 634, 637, 649, 658
PleI GAGTC 3 cut(s) 176, 529, 732
PpsI GAGTC 3 cut(s) 176, 529, 732
PspN4I GGNNCC 3 cut(s) 213, 214, 951
PspOMI GGGCCC 1 cut(s) 212
PspPI GGNCC 3 cut(s) 212, 213, 712
PstI CTGCAG 1 cut(s) 294
PvuII CAGCTG 2 cut(s) 709, 833
RsaI GTAC 2 cut(s) 628, 904
RsaNI GTAC 2 cut(s) 627, 903
RseI CAYNNNNRTG 1 cut(s) 600
SapI GCTCTTC 2 cut(s) 177, 763
SaqAI TTAA 3 cut(s) 546, 585, 696
SatI GCNGC 6 cut(s) 224, 428, 633, 636, 648, 657
Sau3AI GATC 5 cut(s) 111, 121, 396, 703, 975
Sau96I GGNCC 3 cut(s) 212, 213, 712
SchI GAGTC 3 cut(s) 177, 529, 733
ScrFI CCNGG 2 cut(s) 715, 716
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 3 cut(s) 239, 350, 870
SfcI CTRYAG 2 cut(s) 290, 828
SmaI CCCGGG 1 cut(s) 716
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
SphI GCATGC 1 cut(s) 199
Sse9I AATT 6 cut(s) 333, 406, 489, 521, 741, 862
SsiI CCGC 7 cut(s) 74, 145, 305, 324, 430, 701, 794
SspMI CTAG 2 cut(s) 513, 999
StyD4I CCNGG 2 cut(s) 713, 714
TaaI ACNGT 2 cut(s) 420, 463
TaiI ACGT 1 cut(s) 153
TaqI TCGA 5 cut(s) 114, 235, 422, 449, 727
TasI AATT 6 cut(s) 333, 406, 489, 521, 741, 862
TatI WGTACW 1 cut(s) 626
TfiI GAWTC 3 cut(s) 283, 309, 496
Tru1I TTAA 3 cut(s) 546, 585, 696
Tru9I TTAA 3 cut(s) 546, 585, 696
TscAI CASTG 3 cut(s) 169, 466, 1000
TseI GCWGC 6 cut(s) 223, 427, 632, 635, 647, 656
TspDTI ATGAA 4 cut(s) 26, 564, 791, 1004
TspMI CCCGGG 1 cut(s) 714
TspRI CASTG 3 cut(s) 169, 466, 1000
Vha464I CTTAAG 1 cut(s) 695
XceI RCATGY 1 cut(s) 199
XmaI CCCGGG 1 cut(s) 714
XmiI GTMKAC 3 cut(s) 342, 827, 968
XspI CTAG 2 cut(s) 513, 999
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.