Rh7CG071400

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000255
Physical Location & Seq
Reverse (-)
5085512 .. 5085928
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG071400.1

Sequence Viewer

Length: 417 bp
ATGATAAAGAAGGTGTTTGTGTTCAGCGACATGGAGTTTGATCAGGCTTCGCTGGATAGCAGATATGGATTTCGGTATGGAAGGGGGGTTAGGGGGCGCGGGAGATGTGGATTTGGGAATTATGGAAGGGAGAATATTGAAACTCAAAAGGGATGGGAGACTGATTATGAGGTGATACAAAGGAAGTTTAGGGAGAGAGGGTATGGGGATGTGGTGCCACAAATAGTGTTTTGGAATTTGAGGCACTCCAAATCTACACCGGTGACCGAGTCACAAAATAGGGTGGCGCTTCTCAGTGGCTTCTCCAAGAATTTACTGAAGTTGTTCTTGGGTAAGGATGTGGTGACTCGCCTGGACCAAACCATGGAAGAGGCCATCTCTGGCAAAGAGTATCAGAATTTAGTTGTAGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

138

Amino Acids

15.99

Weight (kDa)

9.27

Isoelectric Point (pI)

19.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 1 - 127 2e-35 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 364
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 99
AcsI RAATTY 3 cut(s) 235, 310, 397
AcuI CTGAAG 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 364
AgeI ACCGGT 1 cut(s) 259
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 1 cut(s) 351
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
Alw26I GTCTC 1 cut(s) 152
AoxI GGCC 1 cut(s) 372
ApoI RAATTY 3 cut(s) 235, 310, 397
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AsiGI ACCGGT 1 cut(s) 259
Asp700I GAANNNNTTC 1 cut(s) 323
AspLEI GCGC 2 cut(s) 99, 289
AspS9I GGNCC 1 cut(s) 355
AsuHPI GGTGA 3 cut(s) 184, 274, 355
AvaII GGWCC 1 cut(s) 355
BanI GGYRCC 1 cut(s) 214
BccI CCATC 2 cut(s) 147, 383
BciT130I CCWGG 1 cut(s) 353
BclI TGATCA 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 152
BfoI RGCGCY 1 cut(s) 290
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 355
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 353
BplI GAGNNNNNCTC 2 cut(s) 362, 394
BsaJI CCNNGG 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse118I RCCGGY 1 cut(s) 259
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 3 cut(s) 158, 214, 343
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 374
BshNI GGYRCC 1 cut(s) 214
BshTI ACCGGT 1 cut(s) 259
BsiSI CCGG 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 1 cut(s) 152
BsnI GGCC 1 cut(s) 374
Bsp143I GATC 1 cut(s) 40
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 374
BspCNI CTCAG 1 cut(s) 306
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 1 cut(s) 40
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 293
BstDSI CCRYGG 1 cut(s) 363
BstEII GGTNACC 1 cut(s) 262
BstF5I GGATG 3 cut(s) 158, 214, 343
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 290
BstHHI GCGC 2 cut(s) 99, 289
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 1 cut(s) 40
BstNI CCWGG 1 cut(s) 353
BstPI GGTNACC 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 351
BstUI CGCG 1 cut(s) 99
BsuRI GGCC 1 cut(s) 374
BtgI CCRYGG 1 cut(s) 363
BtsCI GGATG 3 cut(s) 158, 214, 343
BtsIMutI CAGTG 1 cut(s) 301
CfoI GCGC 2 cut(s) 99, 289
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 355
CspAI ACCGGT 1 cut(s) 259
CviAII CATG 2 cut(s) 31, 364
CviJI RGCY 3 cut(s) 47, 300, 374
CviKI_1 RGCY 3 cut(s) 47, 300, 374
DdeI CTNAG 1 cut(s) 293
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 338
Eco91I GGTNACC 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 363
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 2 cut(s) 34, 367
FaiI YATR 7 cut(s) 32, 66, 78, 123, 168, 204, 365
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 2 cut(s) 30, 363
FauI CCCGC 1 cut(s) 92
FbaI TGATCA 1 cut(s) 40
FokI GGATG 3 cut(s) 165, 221, 350
GlaI GCGC 2 cut(s) 98, 288
HaeII RGCGCY 1 cut(s) 290
HaeIII GGCC 1 cut(s) 374
HapII CCGG 1 cut(s) 260
HhaI GCGC 2 cut(s) 99, 289
Hin1II CATG 2 cut(s) 34, 367
Hin6I GCGC 2 cut(s) 97, 287
HinP1I GCGC 2 cut(s) 97, 287
HinfI GANTC 2 cut(s) 269, 346
HpaII CCGG 1 cut(s) 260
HphI GGTGA 3 cut(s) 184, 274, 355
Hpy188I TCNGA 1 cut(s) 396
HpyAV CCTTC 3 cut(s) 4, 75, 120
HpyF3I CTNAG 1 cut(s) 293
Hsp92II CATG 2 cut(s) 34, 367
HspAI GCGC 2 cut(s) 97, 287
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 6 cut(s) 29, 38, 273, 338, 365, 366
MaeIII GTNAC 3 cut(s) 262, 270, 343
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 1 cut(s) 380
MluCI AATT 4 cut(s) 118, 235, 310, 397
MlyI GAGTC 2 cut(s) 278, 340
MnlI CCTC 4 cut(s) 163, 191, 234, 364
MroXI GAANNNNTTC 1 cut(s) 323
MspI CCGG 1 cut(s) 260
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
MvnI CGCG 1 cut(s) 99
NcoI CCATGG 1 cut(s) 363
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 34, 367
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 3 cut(s) 262, 270, 343
PdmI GAANNNNTTC 1 cut(s) 323
PflFI GACNNNGTC 1 cut(s) 268
PflMI CCANNNNNTGG 1 cut(s) 364
PinAI ACCGGT 1 cut(s) 259
PleI GAGTC 2 cut(s) 277, 340
PpsI GAGTC 2 cut(s) 277, 340
Psp6I CCWGG 1 cut(s) 351
PspEI GGTNACC 1 cut(s) 262
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 1 cut(s) 355
PsyI GACNNNGTC 1 cut(s) 268
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 355
SchI GAGTC 2 cut(s) 278, 340
ScrFI CCNGG 1 cut(s) 353
SetI ASST 2 cut(s) 15, 174
SgrAI CRCCGGYG 1 cut(s) 259
SinI GGWCC 1 cut(s) 355
Sse9I AATT 4 cut(s) 118, 235, 310, 397
SsiI CCGC 1 cut(s) 99
SspI AATATT 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 351
StyI CCWWGG 1 cut(s) 363
TaqII GACCGA 1 cut(s) 281
TasI AATT 4 cut(s) 118, 235, 310, 397
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 3 cut(s) 262, 270, 343
Tsp45I GTSAC 3 cut(s) 262, 270, 343
TspRI CASTG 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 268
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 1 cut(s) 355
XapI RAATTY 3 cut(s) 235, 310, 397
XmnI GAANNNNTTC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.