Rh7DG070900

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000255
Physical Location & Seq
Reverse (-)
5445139 .. 5451153
6015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG070900.1

Sequence Viewer

Length: 2778 bp
ATGGGTCCGGCGGATCATCCACCTAGAGATGTTAAACTGCTGAGGCTTTGGGAGAAACTCATCGCCGTCAAATCTAACAAGAAAAAACTCGAGAAGGAGGAGTATAAAACTGTTCAAGCAGAATGGGCAGCGGATAGAGACGAACTGAAAAGTGATGAAGCTAGAGAACTGATGCATCAAAAGATCATAGACAAGACCAAGAATGCCGTGGCTAGGTATGAGCAAGACTCGGATTTGAAGTTCCTATACGAACAAATTTGGGATGTGTTTGGGGATTGCTTGAAGTCCATGGAGGCGGACACGGAGGCTGAGAGGAACGAGATGATCCGATTGAAAAAAGAAAAAGTCAGGGAATTGAGGTATGAAAGAATCTATGACATGGCCAGGAAGGTGGTTTCCAAGTATCAGCAAGACTCCAATTTTCAGTTGCTTCACGAGCAGATTTCTGATGTTTTCGCCGAGTGCTTGAGATCTGACATGGAATGCTTGAAGAAGCACCAGAGAAACAAGATAAGCCTCGCAGCGAAATGGTGCCCTTCCCTCGACTCCTCCTTCGACAAGGCCACTTTGCTCTGCGAAAGCATTGCCAGGAAGGTTTTCCCGCGTGAATTGTACCCGGAGTATCAGGGACTTGAGGAGGCACACTATGCTTACAGAGTGAGAGACCGGCTGAGGAAGGAGGTTTATGTGCCGTTGAGGAGGGCATTGGAATTGCCGGAACTTTATATGACTGACAGAGAGTGGAATTCACTTCCTTACAACAGGGTGGCCTCTGTGGCAATGAAGCTCTACAAACATAGGTTCATTGAGAAGGACTGTGAGAGGTTTGAAAAATATTTGGCGGAAGTGAAAGAAGGTGTGGCCAAGATTGCGGCCGGTGCTCTGCTTCCACATGAGATCATAGCCTCTCTGAATGATGGGGATGGAGGGCAAGTGGCTGAGCTTCAGTGGAAGAGAATGGTGGAGGACCTGGTGGAGCTTGGCAAGCTGAGGAATTGCTTGGCTGTGTGTGACGTGTCCGGAAGCATGGAAGGGACTCCTATGGAGGTGTGTGTGGCTTTGGGTCTGTTGGTGTCGGAATTGATTGAAGAGCCATGGAAAGGAAAGGTGATCACTTTCAGTCAGAACCCTCAGTTGCATTTGATTCAAGGCGAGGATCTTAGCTCCAAGTGCGAGTTTGTGAGGAGGATGGAATGGGGGATGAACACTGATTTTCAAAAGGTGTTTGATCTGATTCTCCAAGTGGCTGTGAATGGGAACTTGAAGCCGGAGCAAATGATAAAGAGGAGGAAGTCCGGCAGGGGTAGGGTTCTGACGGCGGCGGTTCCATTCTCCAGAGGAGGTCGCGGCGGCGGCGGTGCTAAAAAGAGAACCAAGAGCGGTGGCCGGAGAGGAAACAACAGCCGTGTGGCTAGGGAGGTGAGGGTGCTGAACTCAATGGAGAGGGCAAAATCGGAAAAGGAAAAGGCCTCTGCTTTGCGGAAGGAGAAGTTCGCAGCCATGGCCAAGAAGGCTGTTGAGAGGTACCAGCGTGACCCGGACTACAGATTCTTGCACGAACGGGTTTCGGATCTTTTCGCAGAGTGCTTGAAATCGGATATGGAGAATTTGAAGTCCAATCAGTACAAGAAGATTAGCCTTGCGGCGAAATGGTGTCCTTCTCTGGACTCGTCTTTTGATCGAGCCACTCTGCTCTGTGAGAGCATTGCCAGGAAGGTTTTCGCAAGAGAATCGCATCCGGAATATGAAGGAATTGAGGATGCACATTATGCTTATAGAGTCCGAGACCGGCTGAGGAAGGATGTGTTGGTGCCATTGAGGATAGTGTTGGAGTTGCCGGAGGTTTATATGGGTGCCAATCTGTGGGGTGCCATTCCTTACAACAGAGTGGCCTCTGTGGCGATGAAGCTTTACAAGGAGAAGTTCTTGAAGCATGATGAGGAGAGGTTTAAGAAGTATTTGGAGGATGTCAAGGCCGGGAAGTCTACTATTGCGGCCGGTGCTCTGCTTCCGCATGAGATCATAGCCTCTCTGAATGATGGGGATGGAGGGCAGGTGGCCGAGCTTCAGTGGAAGAGAGTGGTGGATGACTTGTTGAAGGAGGGCACGATGAAGAACTGCTTGGCTGTGTGTGATGTGTCCGGAAGCATGGATGGGACTCCTATGGATGTGTGTGTTGCTTTGGGAATGTTGGTGGCTGAGTTGAATGAGGAGCCATGGAAAGGGAAGGTGATCACATTCAGTGCCAATCCTCAGCTTCACTTGATACAAGGCAATGATCTAAGGTCCAAGTCTGAGTTTGTGAAGCGAATGGACTGGGGAGGCAACACTGATTTTCAGAAGGTGTTTGATTTGATCCTCCAAGTGGCTGTGAAGGGGAATCTGAAGCCGGAGCAAATGATTAAGAGGGTGTTTGTTTTCAGTGACATGGAATTTGATCAGGCTTCGGGTTATGGTTATGGTTATGGAGGATATGGATATGGGCGGTTCGGAAGTAATGATGTTCCAAGGGGATGGGAGACTGATTATGAGGTGATTCAGAGGAAGTACAGGGAGAAAGGGTATGGTGATGCGGTGCCACAGATAGTGTTTTGGAATCTGAGGGACTCGAAGGCTACTCCCGTGCCTGGGACTCAACCAGGAGTGGCGCTACTGAGTGGCTTCTCCAAGAATTTGCTCAAGCTCTTCTTGGATAATGATGGGGAGATTCGCCCTGACACAACCATGGAAGCAGCAATCTCGGGTCCAGAGTATCAGAAGCTGGTTGTGCTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

925

Amino Acids

105.78

Weight (kDa)

8.54

Isoelectric Point (pI)

33.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 102 - 330 8.9e-82 Domain of unknown function (DUF2828)
DUF7788 PF25043 332 - 429 8.7e-40 Domain of unknown function (DUF7788)
DUF2828 PF11443 457 - 704 2.9e-89 Domain of unknown function (DUF2828)
DUF7788 PF25043 706 - 904 2.9e-78 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2044
Acc36I ACCTGC 1 cut(s) 2044
Acc65I GGTACC 1 cut(s) 1524
AccB1I GGYRCC 6 cut(s) 531, 1524, 1810, 1853, 1868, 2575
AccB7I CCANNNNNTGG 1 cut(s) 1863
AccBSI CCGCTC 1 cut(s) 1380
AccI GTMKAC 1 cut(s) 1985
AccII CGCG 2 cut(s) 604, 1347
AccIII TCCGGA 3 cut(s) 1019, 1738, 2141
AclWI GGATC 5 cut(s) 21, 319, 1164, 1578, 2350
AcoI YGGCCR 7 cut(s) 381, 861, 873, 1384, 1503, 1995, 2058
AcsI RAATTY 5 cut(s) 255, 745, 1606, 2432, 2671
AcuI CTGAAG 3 cut(s) 929, 2051, 2405
AfaI GTAC 4 cut(s) 614, 1526, 1625, 2549
AfiI CCNNNNNNNGG 7 cut(s) 213, 1100, 1863, 2222, 2365, 2627, 2628
AflIII ACRYGT 1 cut(s) 1014
AjiI CACGTC 1 cut(s) 1015
AjnI CCWGG 6 cut(s) 383, 587, 969, 1709, 2626, 2638
AjuI GAANNNNNNNTTGG 4 cut(s) 1790, 1822, 2105, 2137
AloI GAACNNNNNNTCC 2 cut(s) 224, 256
Alw21I GWGCWC 2 cut(s) 883, 2005
Alw26I GTCTC 4 cut(s) 132, 657, 1779, 2513
AlwI GGATC 5 cut(s) 21, 319, 1164, 1578, 2350
AlwNI CAGNNNCTG 1 cut(s) 2761
Ama87I CYCGRG 2 cut(s) 89, 2740
Aor13HI TCCGGA 3 cut(s) 1019, 1738, 2141
ApeKI GCWGC 4 cut(s) 128, 521, 1496, 2732
ApoI RAATTY 5 cut(s) 255, 745, 1606, 2432, 2671
ArsI GACNNNNNNTTYG 6 cut(s) 536, 568, 1658, 1690, 2417, 2449
Asp700I GAANNNNTTC 2 cut(s) 596, 1718
Asp718I GGTACC 1 cut(s) 1524
AspLEI GCGC 1 cut(s) 2650
AspS9I GGNCC 4 cut(s) 5, 967, 2286, 2744
AsuC2I CCSGG 3 cut(s) 617, 1538, 1978
AsuHPI GGTGA 5 cut(s) 1120, 1432, 2242, 2545, 2579
AvaI CYCGRG 2 cut(s) 89, 2740
AvaII GGWCC 4 cut(s) 5, 967, 2286, 2744
BaeGI GKGCMC 2 cut(s) 536, 2108
BaeI ACNNNNGTAYC 2 cut(s) 1516, 1549
BalI TGGCCA 3 cut(s) 383, 863, 1505
BanI GGYRCC 6 cut(s) 531, 1524, 1810, 1853, 1868, 2575
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BauI CACGAG 1 cut(s) 434
Bbv12I GWGCWC 2 cut(s) 883, 2005
BbvCI CCTCAGC 5 cut(s) 41, 671, 989, 1793, 2253
BbvI GCAGC 4 cut(s) 140, 533, 1508, 2744
BccI CCATC 8 cut(s) 911, 917, 1183, 2033, 2039, 2147, 2508, 2693
BceAI ACGGC 5 cut(s) 50, 191, 676, 1332, 1389
BcgI CGANNNNNNTGC 6 cut(s) 566, 600, 1713, 1747, 2721, 2755
BciT130I CCWGG 6 cut(s) 385, 589, 971, 1711, 2628, 2640
BclI TGATCA 3 cut(s) 1110, 2232, 2437
BcnI CCSGG 3 cut(s) 617, 1538, 1978
BcoDI GTCTC 4 cut(s) 132, 657, 1779, 2513
BfaI CTAG 4 cut(s) 24, 162, 213, 1413
BfmI CTRYAG 1 cut(s) 1543
BfoI RGCGCY 1 cut(s) 2651
BfuAI ACCTGC 1 cut(s) 2044
BglI GCCNNNNNGGC 3 cut(s) 776, 1511, 1898
BglII AGATCT 1 cut(s) 470
BlpI GCTNAGC 1 cut(s) 939
Bme1390I CCNGG 9 cut(s) 385, 589, 617, 971, 1538, 1711, 1978, 2628, 2640
Bme18I GGWCC 4 cut(s) 5, 967, 2286, 2744
BmeT110I CYCGRG 2 cut(s) 89, 2740
BmgBI CACGTC 1 cut(s) 1015
BmgT120I GGNCC 4 cut(s) 5, 967, 2286, 2744
BmrFI CCNGG 9 cut(s) 385, 589, 617, 971, 1538, 1711, 1978, 2628, 2640
BmrI ACTGGG 1 cut(s) 2326
BmsI GCATC 5 cut(s) 162, 184, 1744, 1750, 2560
BmuI ACTGGG 1 cut(s) 2326
BplI GAGNNNNNCTC 2 cut(s) 212, 244
BpmI CTGGAG 1 cut(s) 1318
Bpu10I CCTNAGC 5 cut(s) 41, 671, 989, 1793, 2253
Bpu1102I GCTNAGC 1 cut(s) 939
BpuEI CTTGAG 3 cut(s) 487, 653, 2663
BpuMI CCSGG 3 cut(s) 617, 1538, 1978
BsaI GGTCTC 2 cut(s) 657, 1779
BsaJI CCNNGG 8 cut(s) 207, 288, 1094, 1500, 2216, 2507, 2627, 2724
BsaWI WCCGGW 3 cut(s) 1019, 1738, 2141
BsaXI ACNNNNNCTCC 6 cut(s) 918, 948, 2040, 2070, 2546, 2576
Bsc4I CCNNNNNNNGG 7 cut(s) 213, 1100, 1863, 2222, 2365, 2627, 2628
Bse118I RCCGGY 4 cut(s) 666, 875, 1788, 1997
Bse1I ACTGG 1 cut(s) 2321
Bse3DI GCAATG 4 cut(s) 582, 786, 1704, 2281
BseAI TCCGGA 3 cut(s) 1019, 1738, 2141
BseBI CCWGG 6 cut(s) 385, 589, 971, 1711, 2628, 2640
BseDI CCNNGG 8 cut(s) 207, 288, 1094, 1500, 2216, 2507, 2627, 2724
BseLI CCNNNNNNNGG 7 cut(s) 213, 1100, 1863, 2222, 2365, 2627, 2628
BseMI GCAATG 4 cut(s) 582, 786, 1704, 2281
BseNI ACTGG 1 cut(s) 2321
BseRI GAGGAG 9 cut(s) 113, 538, 650, 712, 1198, 1300, 1353, 1955, 2225
BseSI GKGCMC 2 cut(s) 536, 2108
BseX3I CGGCCG 2 cut(s) 873, 1995
BseXI GCAGC 4 cut(s) 140, 533, 1508, 2744
Bsh1236I CGCG 2 cut(s) 604, 1347
Bsh1285I CGRYCG 2 cut(s) 876, 1998
BshNI GGYRCC 6 cut(s) 531, 1524, 1810, 1853, 1868, 2575
BsiEI CGRYCG 2 cut(s) 876, 1998
BsiHKAI GWGCWC 2 cut(s) 883, 2005
BsiHKCI CYCGRG 2 cut(s) 89, 2740
BslFI GGGAC 5 cut(s) 642, 1048, 2170, 2618, 2644
BslI CCNNNNNNNGG 7 cut(s) 213, 1100, 1863, 2222, 2365, 2627, 2628
BsmAI GTCTC 4 cut(s) 132, 657, 1779, 2513
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 5 cut(s) 642, 1048, 2170, 2618, 2644
BsmI GAATGC 2 cut(s) 208, 488
Bso31I GGTCTC 2 cut(s) 657, 1779
BsoBI CYCGRG 2 cut(s) 89, 2740
Bsp1286I GDGCHC 4 cut(s) 536, 883, 2005, 2108
Bsp13I TCCGGA 3 cut(s) 1019, 1738, 2141
Bsp1720I GCTNAGC 1 cut(s) 939
Bsp19I CCATGG 5 cut(s) 288, 1094, 1500, 2216, 2724
BspEI TCCGGA 3 cut(s) 1019, 1738, 2141
BspFNI CGCG 2 cut(s) 604, 1347
BspMI ACCTGC 1 cut(s) 2044
BspPI GGATC 5 cut(s) 21, 319, 1164, 1578, 2350
BspQI GCTCTTC 2 cut(s) 1083, 2690
BspT107I GGYRCC 6 cut(s) 531, 1524, 1810, 1853, 1868, 2575
BspTNI GGTCTC 2 cut(s) 657, 1779
BsrBI CCGCTC 1 cut(s) 1380
BsrDI GCAATG 4 cut(s) 582, 786, 1704, 2281
BsrFI RCCGGY 4 cut(s) 666, 875, 1788, 1997
BsrI ACTGG 1 cut(s) 2321
BssAI RCCGGY 4 cut(s) 666, 875, 1788, 1997
BssECI CCNNGG 8 cut(s) 207, 288, 1094, 1500, 2216, 2507, 2627, 2724
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 6 cut(s) 288, 1094, 1500, 2216, 2507, 2724
Bst2BI CACGAG 1 cut(s) 434
Bst2UI CCWGG 6 cut(s) 385, 589, 971, 1711, 2628, 2640
Bst4CI ACNGT 2 cut(s) 112, 818
Bst6I CTCTTC 4 cut(s) 947, 1083, 2069, 2690
BstAPI GCANNNNNTGC 2 cut(s) 647, 1769
BstC8I GCNNGC 1 cut(s) 986
BstDSI CCRYGG 6 cut(s) 207, 288, 1094, 1500, 2216, 2724
BstFNI CGCG 2 cut(s) 604, 1347
BstH2I RGCGCY 1 cut(s) 2651
BstHHI GCGC 1 cut(s) 2650
BstMAI GTCTC 4 cut(s) 132, 657, 1779, 2513
BstMCI CGRYCG 2 cut(s) 876, 1998
BstNI CCWGG 6 cut(s) 385, 589, 971, 1711, 2628, 2640
BstSCI CCNGG 9 cut(s) 383, 587, 615, 969, 1536, 1709, 1976, 2626, 2638
BstSFI CTRYAG 1 cut(s) 1543
BstSLI GKGCMC 2 cut(s) 536, 2108
BstUI CGCG 2 cut(s) 604, 1347
BstV1I GCAGC 4 cut(s) 140, 533, 1508, 2744
BstX2I RGATCY 3 cut(s) 470, 1156, 1570
BstXI CCANNNNNNTGG 2 cut(s) 391, 2514
BstYI RGATCY 3 cut(s) 470, 1156, 1570
BstZI CGGCCG 2 cut(s) 873, 1995
BtgI CCRYGG 6 cut(s) 207, 288, 1094, 1500, 2216, 2724
BtgZI GCGATG 2 cut(s) 46, 1916
BtrI CACGTC 1 cut(s) 1015
BtsIMutI CAGTG 6 cut(s) 953, 1206, 2075, 2248, 2328, 2428
BveI ACCTGC 1 cut(s) 2044
Cac8I GCNNGC 1 cut(s) 986
CaiI CAGNNNCTG 1 cut(s) 2761
CfoI GCGC 1 cut(s) 2650
Cfr10I RCCGGY 4 cut(s) 666, 875, 1788, 1997
Cfr13I GGNCC 4 cut(s) 5, 967, 2286, 2744
CsiI ACCWGGT 1 cut(s) 969
Csp6I GTAC 4 cut(s) 613, 1525, 1624, 2548
CspCI CAANNNNNGTGG 2 cut(s) 1363, 1398
CviQI GTAC 4 cut(s) 613, 1525, 1624, 2548
EaeI YGGCCR 7 cut(s) 381, 861, 873, 1384, 1503, 1995, 2058
EagI CGGCCG 2 cut(s) 873, 1995
Eam1104I CTCTTC 4 cut(s) 947, 1083, 2069, 2690
EarI CTCTTC 4 cut(s) 947, 1083, 2069, 2690
EciI GGCGGA 3 cut(s) 26, 311, 857
EclXI CGGCCG 2 cut(s) 873, 1995
Eco130I CCWWGG 6 cut(s) 288, 1094, 1500, 2216, 2507, 2724
Eco147I AGGCCT 1 cut(s) 1469
Eco31I GGTCTC 2 cut(s) 657, 1779
Eco47I GGWCC 4 cut(s) 5, 967, 2286, 2744
Eco52I CGGCCG 2 cut(s) 873, 1995
Eco57I CTGAAG 3 cut(s) 929, 2051, 2405
Eco88I CYCGRG 2 cut(s) 89, 2740
EcoO109I RGGNCCY 1 cut(s) 967
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 6 cut(s) 383, 587, 969, 1709, 2626, 2638
EcoT14I CCWWGG 6 cut(s) 288, 1094, 1500, 2216, 2507, 2724
EcoT22I ATGCAT 1 cut(s) 177
ErhI CCWWGG 6 cut(s) 288, 1094, 1500, 2216, 2507, 2724
Esp3I CGTCTC 1 cut(s) 132
FalI AAGNNNNNCTT 4 cut(s) 2105, 2137, 2672, 2704
FaqI GGGAC 5 cut(s) 642, 1048, 2170, 2618, 2644
FauI CCCGC 1 cut(s) 609
FbaI TGATCA 3 cut(s) 1110, 2232, 2437
FblI GTMKAC 1 cut(s) 1985
FspBI CTAG 4 cut(s) 24, 162, 213, 1413
GlaI GCGC 1 cut(s) 2649
GsuI CTGGAG 1 cut(s) 1318
HaeII RGCGCY 1 cut(s) 2651
HhaI GCGC 1 cut(s) 2650
Hin6I GCGC 1 cut(s) 2648
HinP1I GCGC 1 cut(s) 2648
HindIII AAGCTT 1 cut(s) 1907
HphI GGTGA 5 cut(s) 1120, 1432, 2242, 2545, 2579
Hpy166II GTNNAC 1 cut(s) 1986
Hpy188III TCNNGA 9 cut(s) 91, 434, 1020, 1335, 1664, 1739, 1927, 2142, 2747
Hpy8I GTNNAC 1 cut(s) 1986
HpyCH4III ACNGT 2 cut(s) 112, 818
HpyCH4IV ACGT 1 cut(s) 1014
HpyCH4V TGCA 4 cut(s) 175, 1138, 1555, 1763
HpySE526I ACGT 1 cut(s) 1014
HspAI GCGC 1 cut(s) 2648
Kpn2I TCCGGA 3 cut(s) 1019, 1738, 2141
KpnI GGTACC 1 cut(s) 1528
Ksp22I TGATCA 3 cut(s) 1110, 2232, 2437
LguI GCTCTTC 2 cut(s) 1083, 2690
LmnI GCTCC 5 cut(s) 976, 1169, 1270, 2212, 2392
Lsp1109I GCAGC 4 cut(s) 140, 533, 1508, 2744
LweI GCATC 5 cut(s) 162, 184, 1744, 1750, 2560
MabI ACCWGGT 1 cut(s) 969
MaeI CTAG 4 cut(s) 24, 162, 213, 1413
MaeII ACGT 1 cut(s) 1014
MaeIII GTNAC 3 cut(s) 1010, 1532, 2423
MbiI CCGCTC 1 cut(s) 1380
MboII GAAGA 7 cut(s) 502, 964, 1100, 1642, 2086, 2125, 2677
MflI RGATCY 3 cut(s) 470, 1156, 1570
MhlI GDGCHC 4 cut(s) 536, 883, 2005, 2108
MlsI TGGCCA 3 cut(s) 383, 863, 1505
MluNI TGGCCA 3 cut(s) 383, 863, 1505
MlyI GAGTC 9 cut(s) 221, 407, 539, 1030, 1661, 1788, 2152, 2600, 2626
MmeI TCCRAC 2 cut(s) 1056, 1809
Mox20I TGGCCA 3 cut(s) 383, 863, 1505
Mph1103I ATGCAT 1 cut(s) 177
MroI TCCGGA 3 cut(s) 1019, 1738, 2141
MroXI GAANNNNTTC 2 cut(s) 596, 1718
MscI TGGCCA 3 cut(s) 383, 863, 1505
MseI TTAA 3 cut(s) 33, 1950, 2403
MslI CAYNNNNRTG 1 cut(s) 2723
Msp20I TGGCCA 3 cut(s) 383, 863, 1505
MspA1I CMGCKG 1 cut(s) 131
MspR9I CCNGG 9 cut(s) 385, 589, 617, 971, 1538, 1711, 1978, 2628, 2640
Mva1269I GAATGC 2 cut(s) 208, 488
MvaI CCWGG 6 cut(s) 385, 589, 971, 1711, 2628, 2640
MvnI CGCG 2 cut(s) 604, 1347
NciI CCSGG 3 cut(s) 617, 1538, 1978
NcoI CCATGG 5 cut(s) 288, 1094, 1500, 2216, 2724
NmeAIII GCCGAG 2 cut(s) 484, 2086
NmuCI GTSAC 3 cut(s) 1010, 1532, 2423
NsiI ATGCAT 1 cut(s) 177
PaeR7I CTCGAG 1 cut(s) 89
PaqCI CACCTGC 1 cut(s) 2044
PceI AGGCCT 1 cut(s) 1469
PciSI GCTCTTC 2 cut(s) 1083, 2690
PctI GAATGC 2 cut(s) 208, 488
PdmI GAANNNNTTC 2 cut(s) 596, 1718
PfeI GAWTC 9 cut(s) 369, 1144, 1234, 1548, 1730, 2380, 2536, 2596, 2707
PflMI CCANNNNNTGG 1 cut(s) 1863
PleI GAGTC 9 cut(s) 221, 407, 539, 1030, 1661, 1787, 2152, 2600, 2626
PpsI GAGTC 9 cut(s) 221, 407, 539, 1030, 1661, 1787, 2152, 2600, 2626
PpuMI RGGWCCY 1 cut(s) 967
Psp5II RGGWCCY 1 cut(s) 967
Psp6I CCWGG 6 cut(s) 383, 587, 969, 1709, 2626, 2638
PspGI CCWGG 6 cut(s) 383, 587, 969, 1709, 2626, 2638
PspPI GGNCC 4 cut(s) 5, 967, 2286, 2744
PspPPI RGGWCCY 1 cut(s) 967
PstNI CAGNNNCTG 1 cut(s) 2761
PsuI RGATCY 3 cut(s) 470, 1156, 1570
RsaI GTAC 4 cut(s) 614, 1526, 1625, 2549
RsaNI GTAC 4 cut(s) 613, 1525, 1624, 2548
RseI CAYNNNNRTG 1 cut(s) 2723
SapI GCTCTTC 2 cut(s) 1083, 2690
SaqAI TTAA 3 cut(s) 33, 1950, 2403
Sau96I GGNCC 4 cut(s) 5, 967, 2286, 2744
SchI GAGTC 9 cut(s) 221, 407, 539, 1030, 1661, 1788, 2152, 2600, 2626
ScrFI CCNGG 9 cut(s) 385, 589, 617, 971, 1538, 1711, 1978, 2628, 2640
SduI GDGCHC 4 cut(s) 536, 883, 2005, 2108
SexAI ACCWGGT 1 cut(s) 969
SfaNI GCATC 5 cut(s) 162, 184, 1744, 1750, 2560
SfcI CTRYAG 1 cut(s) 1543
Sfr274I CTCGAG 1 cut(s) 89
SinI GGWCC 4 cut(s) 5, 967, 2286, 2744
SlaI CTCGAG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 2723
SmlI CTYRAG 4 cut(s) 89, 466, 632, 2678
SmoI CTYRAG 4 cut(s) 89, 466, 632, 2678
SseBI AGGCCT 1 cut(s) 1469
SspI AATATT 1 cut(s) 836
SspMI CTAG 4 cut(s) 24, 162, 213, 1413
StuI AGGCCT 1 cut(s) 1469
StyD4I CCNGG 9 cut(s) 383, 587, 615, 969, 1536, 1709, 1976, 2626, 2638
StyI CCWWGG 6 cut(s) 288, 1094, 1500, 2216, 2507, 2724
TaaI ACNGT 2 cut(s) 112, 818
TaiI ACGT 1 cut(s) 1017
TaqI TCGA 5 cut(s) 90, 543, 555, 1681, 2609
TatI WGTACW 2 cut(s) 1623, 2547
TauI GCSGC 7 cut(s) 875, 1322, 1350, 1353, 1356, 1646, 1997
TfiI GAWTC 9 cut(s) 369, 1144, 1234, 1548, 1730, 2380, 2536, 2596, 2707
Tru1I TTAA 3 cut(s) 33, 1950, 2403
Tru9I TTAA 3 cut(s) 33, 1950, 2403
TscAI CASTG 6 cut(s) 953, 1213, 2075, 2248, 2335, 2428
TseFI GTSAC 3 cut(s) 1010, 1532, 2423
TseI GCWGC 4 cut(s) 128, 521, 1496, 2732
Tsp45I GTSAC 3 cut(s) 1010, 1532, 2423
TspDTI ATGAA 8 cut(s) 171, 378, 793, 797, 1217, 1761, 1919, 2126
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 6 cut(s) 953, 1213, 2075, 2248, 2335, 2428
Van91I CCANNNNNTGG 1 cut(s) 1863
VpaK11BI GGWCC 4 cut(s) 5, 967, 2286, 2744
XapI RAATTY 5 cut(s) 255, 745, 1606, 2432, 2671
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XhoI CTCGAG 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 1985
XmnI GAANNNNTTC 2 cut(s) 596, 1718
XspI CTAG 4 cut(s) 24, 162, 213, 1413
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.