RLG00000004943

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000255
Physical Location & Seq
Forward (+)
63883149 .. 63883853
705 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004943

Sequence Viewer

Length: 705 bp
ATGGTGGAGGACCTGGTGGAGCTGGGTAAGCTGAGGAATTGCTTGGCTGTGTGTGACGTGTCCGGAAGCATGGAAGGGACTCCTATGGAGGTGTGTGTGGCTTTGGGTCTGTTGGTGTCGGAATTGAGTGAAGAGCCATGGAAAGGAAAGGTAATCACTTTCAGTCAGAACCCTCAGTTGCATTTGATTCAAGGCGAGGATCTTAGCTCCAAGTGCGAGTTTGTGACGAGGATGGACTGGGGGATGAACACTGATTTTCAAAAGGTGTTTGATCTGATTCTCCAAGTGGCTGTGAATGGGAACTTGAAGCCGGAGCAAATGATAAAGAGGGTGTTTGTGTTTAGCGACATGGAGTTTGATCAGGCTTCAGGGCATATATCACAGTTCTATGATAGTTATTTGAGGTATCATCATTGTGGTCAAAGGGAGAAAAGCAATAGTTGGGAGACTGATTATGAGGTGATACAGAGGAAGTTTAGGGAGAAAGGGTACGGGGATGCAGTGCCACAGATAGTGTTTTGGAATCTGAGGGACTCTAGGTCTACGCCGGTAACGGAGACACAAAATGGAGTGGCGCTGGTGAGTGGCTTCTCCAAGAATCTACTCAAGCTGTTCTTGGACAATGATGGCCAAATTCGGCCGGACCTTATCATGGAAAAAGCTATCTCTGGGAAAGAGTATCAGCATCTAGTTGTTGTGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

235

Amino Acids

26.7

Weight (kDa)

5.03

Isoelectric Point (pI)

30.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7788 PF25043 13 - 212 1.4e-84 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 542
AccIII TCCGGA 1 cut(s) 62
AclWI GGATC 1 cut(s) 207
AcoI YGGCCR 2 cut(s) 628, 638
AcsI RAATTY 1 cut(s) 633
AcuI CTGAAG 1 cut(s) 351
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 2 cut(s) 143, 652
AflIII ACRYGT 1 cut(s) 57
AgsI TTSAA 3 cut(s) 191, 260, 307
AhdI GACNNNNNGTC 1 cut(s) 538
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 5 cut(s) 22, 31, 207, 610, 662
AluI AGCT 5 cut(s) 22, 31, 207, 610, 662
Alw26I GTCTC 2 cut(s) 440, 551
AlwI GGATC 1 cut(s) 207
Aor13HI TCCGGA 1 cut(s) 62
AoxI GGCC 2 cut(s) 628, 638
ApoI RAATTY 1 cut(s) 633
ArsI GACNNNNNNTTYG 2 cut(s) 338, 370
AspLEI GCGC 1 cut(s) 577
AspS9I GGNCC 2 cut(s) 10, 643
AsuHPI GGTGA 2 cut(s) 472, 592
AvaII GGWCC 2 cut(s) 10, 643
BalI TGGCCA 1 cut(s) 630
BbvCI CCTCAGC 1 cut(s) 32
BccI CCATC 2 cut(s) 226, 620
BciT130I CCWGG 1 cut(s) 14
BclI TGATCA 1 cut(s) 358
BcoDI GTCTC 2 cut(s) 440, 551
BfaI CTAG 2 cut(s) 537, 689
BfoI RGCGCY 1 cut(s) 578
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 2 cut(s) 10, 643
BmeRI GACNNNNNGTC 1 cut(s) 538
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 10, 643
BmrFI CCNGG 1 cut(s) 14
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 2 cut(s) 487, 694
BmuI ACTGGG 1 cut(s) 247
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 590
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 652
Bse118I RCCGGY 1 cut(s) 547
Bse1I ACTGG 1 cut(s) 242
BseAI TCCGGA 1 cut(s) 62
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 3 cut(s) 237, 249, 502
BseLI CCNNNNNNNGG 2 cut(s) 143, 652
BseMII CTCAG 3 cut(s) 23, 188, 518
BseNI ACTGG 1 cut(s) 242
BseX3I CGGCCG 1 cut(s) 638
BseYI CCCAGC 1 cut(s) 22
Bsh1285I CGRYCG 1 cut(s) 641
BshFI GGCC 2 cut(s) 630, 640
BsiEI CGRYCG 1 cut(s) 641
BsiSI CCGG 4 cut(s) 63, 311, 548, 641
BslFI GGGAC 2 cut(s) 91, 545
BslI CCNNNNNNNGG 2 cut(s) 143, 652
BsmAI GTCTC 2 cut(s) 440, 551
BsmFI GGGAC 2 cut(s) 91, 545
BsnI GGCC 2 cut(s) 630, 640
Bsp13I TCCGGA 1 cut(s) 62
Bsp143I GATC 3 cut(s) 199, 271, 358
Bsp19I CCATGG 1 cut(s) 137
BspANI GGCC 2 cut(s) 630, 640
BspCNI CTCAG 3 cut(s) 24, 187, 519
BspEI TCCGGA 1 cut(s) 62
BspPI GGATC 1 cut(s) 207
BspQI GCTCTTC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 547
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 547
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 3 cut(s) 199, 271, 358
BssT1I CCWWGG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 384
Bst6I CTCTTC 1 cut(s) 126
BstDEI CTNAG 4 cut(s) 32, 174, 203, 527
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 3 cut(s) 237, 249, 502
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 1 cut(s) 577
BstKTI GATC 3 cut(s) 202, 274, 361
BstMAI GTCTC 2 cut(s) 440, 551
BstMBI GATC 3 cut(s) 199, 271, 358
BstMCI CGRYCG 1 cut(s) 641
BstMWI GCNNNNNNNGC 2 cut(s) 28, 213
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BstZI CGGCCG 1 cut(s) 638
BsuRI GGCC 2 cut(s) 630, 640
BtgI CCRYGG 1 cut(s) 137
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 3 cut(s) 237, 249, 502
BtsI GCAGTG 1 cut(s) 507
BtsIMutI CAGTG 2 cut(s) 249, 507
CfoI GCGC 1 cut(s) 577
Cfr10I RCCGGY 1 cut(s) 547
Cfr13I GGNCC 2 cut(s) 10, 643
CsiI ACCWGGT 1 cut(s) 12
Csp6I GTAC 1 cut(s) 490
CviAII CATG 4 cut(s) 70, 138, 349, 652
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 4 cut(s) 32, 174, 203, 527
DpnI GATC 3 cut(s) 201, 273, 360
DpnII GATC 3 cut(s) 199, 271, 358
DriI GACNNNNNGTC 1 cut(s) 538
EaeI YGGCCR 2 cut(s) 628, 638
EagI CGGCCG 1 cut(s) 638
Eam1104I CTCTTC 1 cut(s) 126
Eam1105I GACNNNNNGTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 126
EclXI CGGCCG 1 cut(s) 638
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 10, 643
Eco52I CGGCCG 1 cut(s) 638
Eco57I CTGAAG 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 4 cut(s) 73, 141, 352, 655
FaiI YATR 9 cut(s) 71, 86, 139, 350, 375, 377, 390, 456, 653
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FaqI GGGAC 2 cut(s) 91, 545
FatI CATG 4 cut(s) 69, 137, 348, 651
FbaI TGATCA 1 cut(s) 358
FblI GTMKAC 1 cut(s) 542
FokI GGATG 3 cut(s) 244, 256, 509
FspBI CTAG 2 cut(s) 537, 689
GlaI GCGC 1 cut(s) 576
GsaI CCCAGC 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 578
HaeIII GGCC 2 cut(s) 630, 640
HapII CCGG 4 cut(s) 63, 311, 548, 641
HhaI GCGC 1 cut(s) 577
Hin1II CATG 4 cut(s) 73, 141, 352, 655
Hin6I GCGC 1 cut(s) 575
HinP1I GCGC 1 cut(s) 575
HinfI GANTC 6 cut(s) 79, 187, 277, 523, 533, 598
HpaII CCGG 4 cut(s) 63, 311, 548, 641
HphI GGTGA 2 cut(s) 472, 592
Hpy166II GTNNAC 1 cut(s) 543
Hpy188I TCNGA 4 cut(s) 121, 168, 276, 528
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 543
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 384
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 2 cut(s) 181, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 28, 213
HpyF3I CTNAG 4 cut(s) 32, 174, 203, 527
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 4 cut(s) 73, 141, 352, 655
HspAI GCGC 1 cut(s) 575
Kpn2I TCCGGA 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 3 cut(s) 199, 271, 358
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 3 cut(s) 19, 212, 313
LweI GCATC 2 cut(s) 487, 694
MabI ACCWGGT 1 cut(s) 12
MaeI CTAG 2 cut(s) 537, 689
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 53, 223, 550
MalI GATC 3 cut(s) 201, 273, 360
MboI GATC 3 cut(s) 199, 271, 358
MboII GAAGA 1 cut(s) 143
MflI RGATCY 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 3 cut(s) 37, 122, 633
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 2 cut(s) 73, 527
MmeI TCCRAC 1 cut(s) 99
Mox20I TGGCCA 1 cut(s) 630
MroI TCCGGA 1 cut(s) 62
MscI TGGCCA 1 cut(s) 630
MseI TTAA 1 cut(s) 703
MslI CAYNNNNRTG 1 cut(s) 414
Msp20I TGGCCA 1 cut(s) 630
MspI CCGG 4 cut(s) 63, 311, 548, 641
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 28, 213
NcoI CCATGG 1 cut(s) 137
NdeII GATC 3 cut(s) 199, 271, 358
NlaIII CATG 4 cut(s) 73, 141, 352, 655
NmuCI GTSAC 2 cut(s) 53, 223
PciSI GCTCTTC 1 cut(s) 126
PfeI GAWTC 4 cut(s) 187, 277, 523, 598
PleI GAGTC 2 cut(s) 73, 527
PpsI GAGTC 2 cut(s) 73, 527
PpuMI RGGWCCY 1 cut(s) 10
Psp5II RGGWCCY 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 2 cut(s) 10, 643
PspPPI RGGWCCY 1 cut(s) 10
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
RseI CAYNNNNRTG 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 1 cut(s) 703
Sau3AI GATC 3 cut(s) 199, 271, 358
Sau96I GGNCC 2 cut(s) 10, 643
SchI GAGTC 2 cut(s) 73, 527
ScrFI CCNGG 1 cut(s) 14
SexAI ACCWGGT 1 cut(s) 12
SfaNI GCATC 2 cut(s) 487, 694
SinI GGWCC 2 cut(s) 10, 643
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 3 cut(s) 37, 122, 633
SspMI CTAG 2 cut(s) 537, 689
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 1 cut(s) 384
TaiI ACGT 1 cut(s) 60
TasI AATT 3 cut(s) 37, 122, 633
TfiI GAWTC 4 cut(s) 187, 277, 523, 598
Tru1I TTAA 1 cut(s) 703
Tru9I TTAA 1 cut(s) 703
TscAI CASTG 2 cut(s) 256, 507
TseFI GTSAC 2 cut(s) 53, 223
Tsp45I GTSAC 2 cut(s) 53, 223
TspDTI ATGAA 1 cut(s) 260
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 2 cut(s) 256, 507
VpaK11BI GGWCC 2 cut(s) 10, 643
XapI RAATTY 1 cut(s) 633
XmiI GTMKAC 1 cut(s) 542
XspI CTAG 2 cut(s) 537, 689
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.