Rroxscaffold_2G00108460

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000255
Physical Location & Seq
Forward (+)
32446859 .. 32448088
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00108460.1

Sequence Viewer

Length: 1230 bp
ATGGAGATGGCCAAGAAGGCCGTTGAGAGGTACCAGCGAGACCCGGATTACCGGTTTTTATATGACCGGGTTTCGGATCTTTTCAGTGAGTGTTTGAAGTCCGATGTCGAGAATCTCAAGGCCAATCAGTACAAGAAGATCAGCTTGGCAGCCAAGTGGTGCCCTTCTATCGATTCGTCGTTTGATAAGGCAACATTGCTATGTGAAAGCATAGCAAGGAACGTTTTCCCCAGGGGAATCGTATCCGGAATATCAAGGAATCGAGGAGGCTCATTATGTTTACAGAGTCCGAGACCGGCTGAGGAAGGAGATCCTTGTGCCGCGCTGAGGAAGGTTTTGGAGTTGCCTGAGGTTTATATTGGAGCTAATGACTGGAATTCGATTCCTTATAATCGAGTCGCCTCGTTGGCCATGAAGCTTTACAAGGAGAAGTTCTTCAAGCATGATGAAGAGAGGTTCAAAAAGTACTTGGAGAATGTGCAGGCCGGCAAGTCCAAGATTGCTGCCGGTGCTCTGCTGCCGCACGAGATCATAGCCTCTCTGAGGGACAGTGATGGGGGCCAAGTGGCCGAGCTTCAGTGGCAGAGAATGGTAGAGGATATGTTGAAGTTGGGGAAGATGAAGAATTGCTTGGCTGTGTGTGACGTGTCCGGAAGCATGAGTGGAGAGCCAATGGAGGTGTGTGTGGCTTTGGGGCTTTTGGTGTCTGAGCTGTGTGATGACCCATGGAAAGGGAAGGTGATCACCTTCAGTCACAACCCTCAACTACATTTAATCCATGGTGAAAGTCTCGAGTCCAAGACCAATTTTATAAGGAGGATGGAGTGGGGGTGGAACACTGATTTTCAGAAGGTGTTTGATTTGCTTCTCCAGGTGGCGGTTAATGGAAAGTTGAAGCCGGAAAATATGATCAAGAGGATTTTTGTGTTCAGTGACATGGAGTTTGATCAGGCCTCGTCAAATAGATGGGAGACTGATTATGAGGTGATTCAAAGAAAGTATAGGAAGAATGGGTATGGGGATGCTGTGCCACAGATAGTGTTTTGGAATCTGAGGGACTCGAGGTCTACTCCTGTGCCAGGGACTCAACCTGGGGTGGCTTTGTTGAGTGGCTTCTCCAAGAACTTGCTCAAGTTGTTCCTGGATTACGATGGGGAAATCCGCCCGGACCTGACCATGGAATTGGCTATCTCTGGCCCTGAGTATCAGAAGCTGGTTGTCCTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

409

Amino Acids

46.46

Weight (kDa)

6.57

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 2 - 207 1.4e-71 Domain of unknown function (DUF2828)
DUF7788 PF25043 209 - 387 1.8e-80 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 390, 812
Acc65I GGTACC 1 cut(s) 30
AccB1I GGYRCC 2 cut(s) 30, 159
AccI GTMKAC 1 cut(s) 1067
AccII CGCG 1 cut(s) 323
AccIII TCCGGA 2 cut(s) 245, 650
AciI CCGC 4 cut(s) 321, 521, 878, 1162
AclI AACGTT 1 cut(s) 222
AclWI GGATC 2 cut(s) 84, 305
AcoI YGGCCR 3 cut(s) 9, 408, 567
AcsI RAATTY 1 cut(s) 376
AcuI CTGAAG 2 cut(s) 560, 733
AfaI GTAC 3 cut(s) 32, 131, 467
AfiI CCNNNNNNNGG 8 cut(s) 27, 73, 327, 543, 731, 877, 1079, 1177
AflIII ACRYGT 1 cut(s) 645
AgeI ACCGGT 1 cut(s) 51
AgsI TTSAA 6 cut(s) 97, 439, 460, 607, 895, 992
AhdI GACNNNNNGTC 1 cut(s) 1063
AjiI CACGTC 1 cut(s) 646
AjnI CCWGG 6 cut(s) 230, 870, 1078, 1090, 1140, 1221
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 614, 646
AluBI AGCT 6 cut(s) 144, 365, 418, 574, 712, 1213
AluI AGCT 6 cut(s) 144, 365, 418, 574, 712, 1213
Alw21I GWGCWC 1 cut(s) 514
Alw26I GTCTC 4 cut(s) 33, 286, 794, 965
AlwI GGATC 2 cut(s) 84, 305
AlwNI CAGNNNCTG 1 cut(s) 1213
Ama87I CYCGRG 2 cut(s) 791, 1060
Aor13HI TCCGGA 2 cut(s) 245, 650
AoxI GGCC 9 cut(s) 9, 18, 120, 408, 483, 559, 567, 951, 1195
ApeKI GCWGC 3 cut(s) 149, 503, 517
ApoI RAATTY 1 cut(s) 376
ArsI GACNNNNNNTTYG 2 cut(s) 926, 958
AsiGI ACCGGT 1 cut(s) 51
Asp700I GAANNNNTTC 2 cut(s) 224, 434
Asp718I GGTACC 1 cut(s) 30
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 3 cut(s) 559, 1168, 1196
AsuC2I CCSGG 3 cut(s) 44, 68, 1166
AsuHPI GGTGA 4 cut(s) 736, 751, 794, 997
AvaI CYCGRG 2 cut(s) 791, 1060
AvaII GGWCC 1 cut(s) 1168
AxyI CCTNAGG 1 cut(s) 348
BaeGI GKGCMC 1 cut(s) 164
BalI TGGCCA 2 cut(s) 11, 410
BanI GGYRCC 2 cut(s) 30, 159
BauI CACGAG 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 514
BbvCI CCTCAGC 2 cut(s) 300, 326
BbvI GCAGC 3 cut(s) 161, 490, 504
BccI CCATC 4 cut(s) 548, 814, 960, 1145
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 6 cut(s) 232, 872, 1080, 1092, 1142, 1223
BciVI GTATCC 1 cut(s) 253
BclI TGATCA 3 cut(s) 741, 909, 946
BcnI CCSGG 3 cut(s) 44, 68, 1166
BcoDI GTCTC 4 cut(s) 33, 286, 794, 965
BfuI GTATCC 1 cut(s) 253
BglI GCCNNNNNGGC 2 cut(s) 17, 407
BisI GCNGC 5 cut(s) 150, 321, 504, 518, 521
BlsI GCNGC 5 cut(s) 151, 322, 505, 519, 522
BmcAI AGTACT 1 cut(s) 467
Bme1390I CCNGG 9 cut(s) 44, 68, 232, 872, 1080, 1092, 1142, 1166, 1223
Bme18I GGWCC 1 cut(s) 1168
BmeRI GACNNNNNGTC 1 cut(s) 1063
BmeT110I CYCGRG 2 cut(s) 791, 1060
BmgBI CACGTC 1 cut(s) 646
BmgT120I GGNCC 3 cut(s) 559, 1168, 1196
BmiI GGNNCC 3 cut(s) 32, 161, 560
BmrFI CCNGG 9 cut(s) 44, 68, 232, 872, 1080, 1092, 1142, 1166, 1223
BmsI GCATC 1 cut(s) 1012
BplI GAGNNNNNCTC 2 cut(s) 1054, 1086
BpmI CTGGAG 1 cut(s) 854
Bpu10I CCTNAGC 2 cut(s) 300, 326
BpuEI CTTGAG 2 cut(s) 101, 1115
BpuMI CCSGG 3 cut(s) 44, 68, 1166
Bsa29I ATCGAT 1 cut(s) 171
BsaI GGTCTC 2 cut(s) 33, 286
BsaJI CCNNGG 7 cut(s) 230, 231, 725, 778, 1079, 1091, 1176
BsaWI WCCGGW 3 cut(s) 51, 245, 650
BsaXI ACNNNNNCTCC 2 cut(s) 815, 845
Bsc4I CCNNNNNNNGG 8 cut(s) 27, 73, 327, 543, 731, 877, 1079, 1177
Bse118I RCCGGY 4 cut(s) 51, 295, 485, 506
Bse1I ACTGG 1 cut(s) 377
Bse21I CCTNAGG 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 194
BseAI TCCGGA 2 cut(s) 245, 650
BseBI CCWGG 6 cut(s) 232, 872, 1080, 1092, 1142, 1223
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 7 cut(s) 230, 231, 725, 778, 1079, 1091, 1176
BseGI GGATG 2 cut(s) 825, 1027
BseLI CCNNNNNNNGG 8 cut(s) 27, 73, 327, 543, 731, 877, 1079, 1177
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 7 cut(s) 291, 317, 339, 533, 699, 1043, 1191
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 3 cut(s) 161, 490, 504
BsgI GTGCAG 1 cut(s) 500
Bsh1236I CGCG 1 cut(s) 323
BshFI GGCC 9 cut(s) 11, 20, 122, 410, 485, 561, 569, 953, 1197
BshNI GGYRCC 2 cut(s) 30, 159
BshTI ACCGGT 1 cut(s) 51
BshVI ATCGAT 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 514
BsiHKCI CYCGRG 2 cut(s) 791, 1060
BslFI GGGAC 3 cut(s) 560, 1070, 1096
BslI CCNNNNNNNGG 8 cut(s) 27, 73, 327, 543, 731, 877, 1079, 1177
BsmAI GTCTC 4 cut(s) 33, 286, 794, 965
BsmFI GGGAC 3 cut(s) 560, 1070, 1096
BsnI GGCC 9 cut(s) 11, 20, 122, 410, 485, 561, 569, 953, 1197
Bso31I GGTCTC 2 cut(s) 33, 286
BsoBI CYCGRG 2 cut(s) 791, 1060
Bsp1286I GDGCHC 2 cut(s) 164, 514
Bsp13I TCCGGA 2 cut(s) 245, 650
Bsp143I GATC 7 cut(s) 76, 138, 310, 528, 741, 909, 946
Bsp19I CCATGG 3 cut(s) 725, 778, 1176
BspACI CCGC 4 cut(s) 321, 521, 878, 1162
BspANI GGCC 9 cut(s) 11, 20, 122, 410, 485, 561, 569, 953, 1197
BspCNI CTCAG 7 cut(s) 292, 318, 340, 534, 700, 1044, 1192
BspDI ATCGAT 1 cut(s) 171
BspEI TCCGGA 2 cut(s) 245, 650
BspFNI CGCG 1 cut(s) 323
BspLI GGNNCC 3 cut(s) 32, 161, 560
BspPI GGATC 2 cut(s) 84, 305
BspT107I GGYRCC 2 cut(s) 30, 159
BspTNI GGTCTC 2 cut(s) 33, 286
BsrDI GCAATG 1 cut(s) 194
BsrFI RCCGGY 4 cut(s) 51, 295, 485, 506
BsrI ACTGG 1 cut(s) 377
BssAI RCCGGY 4 cut(s) 51, 295, 485, 506
BssECI CCNNGG 7 cut(s) 230, 231, 725, 778, 1079, 1091, 1176
BssMI GATC 7 cut(s) 76, 138, 310, 528, 741, 909, 946
BssSI CACGAG 1 cut(s) 524
BssT1I CCWWGG 3 cut(s) 725, 778, 1176
Bst2BI CACGAG 1 cut(s) 524
Bst2UI CCWGG 6 cut(s) 232, 872, 1080, 1092, 1142, 1223
Bst4CI ACNGT 1 cut(s) 551
Bst6I CTCTTC 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 483, 487
BstDEI CTNAG 7 cut(s) 300, 326, 348, 542, 708, 1052, 1200
BstDSI CCRYGG 3 cut(s) 725, 778, 1176
BstENI CCTNNNNNAGG 2 cut(s) 541, 1077
BstF5I GGATG 2 cut(s) 825, 1027
BstFNI CGCG 1 cut(s) 323
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 7 cut(s) 79, 141, 313, 531, 744, 912, 949
BstMAI GTCTC 4 cut(s) 33, 286, 794, 965
BstMBI GATC 7 cut(s) 76, 138, 310, 528, 741, 909, 946
BstMWI GCNNNNNNNGC 4 cut(s) 17, 407, 509, 580
BstNI CCWGG 6 cut(s) 232, 872, 1080, 1092, 1142, 1223
BstSCI CCNGG 9 cut(s) 42, 66, 230, 870, 1078, 1090, 1140, 1164, 1221
BstSLI GKGCMC 1 cut(s) 164
BstUI CGCG 1 cut(s) 323
BstV1I GCAGC 3 cut(s) 161, 490, 504
BstX2I RGATCY 2 cut(s) 76, 310
BstXI CCANNNNNNTGG 1 cut(s) 1183
BstYI RGATCY 2 cut(s) 76, 310
Bsu15I ATCGAT 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 348
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 9 cut(s) 11, 20, 122, 410, 485, 561, 569, 953, 1197
BsuTUI ATCGAT 1 cut(s) 171
BtgI CCRYGG 3 cut(s) 725, 778, 1176
BtrI CACGTC 1 cut(s) 646
BtsCI GGATG 2 cut(s) 825, 1027
BtsIMutI CAGTG 5 cut(s) 91, 556, 584, 837, 937
Cac8I GCNNGC 2 cut(s) 483, 487
CaiI CAGNNNCTG 1 cut(s) 1213
CfoI GCGC 1 cut(s) 325
Cfr10I RCCGGY 4 cut(s) 51, 295, 485, 506
Cfr13I GGNCC 3 cut(s) 559, 1168, 1196
ClaI ATCGAT 1 cut(s) 171
Csp6I GTAC 3 cut(s) 31, 130, 466
CspAI ACCGGT 1 cut(s) 51
CviAII CATG 7 cut(s) 412, 443, 658, 726, 779, 937, 1177
CviQI GTAC 3 cut(s) 31, 130, 466
DdeI CTNAG 7 cut(s) 300, 326, 348, 542, 708, 1052, 1200
DpnI GATC 7 cut(s) 78, 140, 312, 530, 743, 911, 948
DpnII GATC 7 cut(s) 76, 138, 310, 528, 741, 909, 946
DriI GACNNNNNGTC 1 cut(s) 1063
EaeI YGGCCR 3 cut(s) 9, 408, 567
Eam1104I CTCTTC 1 cut(s) 444
Eam1105I GACNNNNNGTC 1 cut(s) 1063
EarI CTCTTC 1 cut(s) 444
EciI GGCGGA 1 cut(s) 1151
Eco130I CCWWGG 3 cut(s) 725, 778, 1176
Eco147I AGGCCT 1 cut(s) 953
Eco31I GGTCTC 2 cut(s) 33, 286
Eco47I GGWCC 1 cut(s) 1168
Eco57I CTGAAG 2 cut(s) 560, 733
Eco81I CCTNAGG 1 cut(s) 348
Eco88I CYCGRG 2 cut(s) 791, 1060
EcoNI CCTNNNNNAGG 2 cut(s) 541, 1077
EcoRI GAATTC 1 cut(s) 376
EcoRII CCWGG 6 cut(s) 230, 870, 1078, 1090, 1140, 1221
EcoT14I CCWWGG 3 cut(s) 725, 778, 1176
ErhI CCWWGG 3 cut(s) 725, 778, 1176
FaeI CATG 7 cut(s) 415, 446, 661, 729, 782, 940, 1180
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 614, 646
FaqI GGGAC 3 cut(s) 560, 1070, 1096
FatI CATG 7 cut(s) 411, 442, 657, 725, 778, 936, 1176
FbaI TGATCA 3 cut(s) 741, 909, 946
FblI GTMKAC 1 cut(s) 1067
Fnu4HI GCNGC 5 cut(s) 150, 321, 504, 518, 521
FokI GGATG 2 cut(s) 832, 1034
Fsp4HI GCNGC 5 cut(s) 150, 321, 504, 518, 521
GlaI GCGC 1 cut(s) 324
GluI GCNGC 5 cut(s) 150, 321, 504, 518, 521
GsuI CTGGAG 1 cut(s) 854
HaeIII GGCC 9 cut(s) 11, 20, 122, 410, 485, 561, 569, 953, 1197
HhaI GCGC 1 cut(s) 325
Hin1II CATG 7 cut(s) 415, 446, 661, 729, 782, 940, 1180
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HindIII AAGCTT 1 cut(s) 416
HphI GGTGA 4 cut(s) 736, 751, 794, 997
Hpy166II GTNNAC 2 cut(s) 281, 1068
Hpy188I TCNGA 8 cut(s) 76, 103, 291, 543, 709, 849, 1053, 1209
Hpy188III TCNNGA 5 cut(s) 109, 246, 651, 791, 913
Hpy8I GTNNAC 2 cut(s) 281, 1068
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 7 cut(s) 10, 174, 299, 325, 730, 757, 844
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4IV ACGT 2 cut(s) 222, 645
HpyCH4V TGCA 1 cut(s) 481
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 407, 509, 580
HpyF3I CTNAG 7 cut(s) 300, 326, 348, 542, 708, 1052, 1200
HpySE526I ACGT 2 cut(s) 222, 645
Hsp92II CATG 7 cut(s) 415, 446, 661, 729, 782, 940, 1180
HspAI GCGC 1 cut(s) 323
Kpn2I TCCGGA 2 cut(s) 245, 650
KpnI GGTACC 1 cut(s) 34
KroI GCCGGC 1 cut(s) 485
KroNI GCCGGC 1 cut(s) 487
Ksp22I TGATCA 3 cut(s) 741, 909, 946
Kzo9I GATC 7 cut(s) 76, 138, 310, 528, 741, 909, 946
LmnI GCTCC 1 cut(s) 362
Lsp1109I GCAGC 3 cut(s) 161, 490, 504
LweI GCATC 1 cut(s) 1012
MaeII ACGT 2 cut(s) 222, 645
MaeIII GTNAC 3 cut(s) 641, 752, 932
MalI GATC 7 cut(s) 78, 140, 312, 530, 743, 911, 948
MboI GATC 7 cut(s) 76, 138, 310, 528, 741, 909, 946
MboII GAAGA 6 cut(s) 148, 427, 461, 628, 634, 1018
MflI RGATCY 2 cut(s) 76, 310
MhlI GDGCHC 2 cut(s) 164, 514
MlsI TGGCCA 2 cut(s) 11, 410
MluCI AATT 4 cut(s) 376, 625, 805, 1181
MluNI TGGCCA 2 cut(s) 11, 410
MlyI GAGTC 5 cut(s) 295, 405, 803, 1052, 1078
Mox20I TGGCCA 2 cut(s) 11, 410
MroI TCCGGA 2 cut(s) 245, 650
MroNI GCCGGC 1 cut(s) 485
MroXI GAANNNNTTC 2 cut(s) 224, 434
MscI TGGCCA 2 cut(s) 11, 410
MseI TTAA 2 cut(s) 773, 882
MslI CAYNNNNRTG 1 cut(s) 199
Msp20I TGGCCA 2 cut(s) 11, 410
MspR9I CCNGG 9 cut(s) 44, 68, 232, 872, 1080, 1092, 1142, 1166, 1223
MvaI CCWGG 6 cut(s) 232, 872, 1080, 1092, 1142, 1223
MvnI CGCG 1 cut(s) 323
MwoI GCNNNNNNNGC 4 cut(s) 17, 407, 509, 580
NaeI GCCGGC 1 cut(s) 487
NciI CCSGG 3 cut(s) 44, 68, 1166
NcoI CCATGG 3 cut(s) 725, 778, 1176
NdeII GATC 7 cut(s) 76, 138, 310, 528, 741, 909, 946
NgoMIV GCCGGC 1 cut(s) 485
NlaIII CATG 7 cut(s) 415, 446, 661, 729, 782, 940, 1180
NlaIV GGNNCC 3 cut(s) 32, 161, 560
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 3 cut(s) 641, 752, 932
PaeR7I CTCGAG 2 cut(s) 791, 1060
PasI CCCWGGG 1 cut(s) 231
PceI AGGCCT 1 cut(s) 953
PdiI GCCGGC 1 cut(s) 487
PdmI GAANNNNTTC 2 cut(s) 224, 434
PfeI GAWTC 7 cut(s) 112, 173, 237, 259, 382, 988, 1048
PfoI TCCNGGA 2 cut(s) 1140, 1221
PinAI ACCGGT 1 cut(s) 51
PkrI GCNGC 5 cut(s) 151, 322, 505, 519, 522
PleI GAGTC 5 cut(s) 294, 404, 802, 1052, 1078
PpsI GAGTC 5 cut(s) 294, 404, 802, 1052, 1078
PsiI TTATAA 2 cut(s) 390, 812
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 6 cut(s) 230, 870, 1078, 1090, 1140, 1221
PspGI CCWGG 6 cut(s) 230, 870, 1078, 1090, 1140, 1221
PspN4I GGNNCC 3 cut(s) 32, 161, 560
PspPI GGNCC 3 cut(s) 559, 1168, 1196
PspXI VCTCGAGB 1 cut(s) 1060
PstNI CAGNNNCTG 1 cut(s) 1213
PsuI RGATCY 2 cut(s) 76, 310
RsaI GTAC 3 cut(s) 32, 131, 467
RsaNI GTAC 3 cut(s) 31, 130, 466
RseI CAYNNNNRTG 1 cut(s) 199
SaqAI TTAA 2 cut(s) 773, 882
SatI GCNGC 5 cut(s) 150, 321, 504, 518, 521
Sau3AI GATC 7 cut(s) 76, 138, 310, 528, 741, 909, 946
Sau96I GGNCC 3 cut(s) 559, 1168, 1196
ScaI AGTACT 1 cut(s) 467
SchI GAGTC 5 cut(s) 295, 405, 803, 1052, 1078
ScrFI CCNGG 9 cut(s) 44, 68, 232, 872, 1080, 1092, 1142, 1166, 1223
SduI GDGCHC 2 cut(s) 164, 514
SfaNI GCATC 1 cut(s) 1012
SfiI GGCCNNNNNGGCC 1 cut(s) 17
Sfr274I CTCGAG 2 cut(s) 791, 1060
SinI GGWCC 1 cut(s) 1168
SlaI CTCGAG 2 cut(s) 791, 1060
SmiMI CAYNNNNRTG 1 cut(s) 199
SmlI CTYRAG 4 cut(s) 116, 791, 1060, 1130
SmoI CTYRAG 4 cut(s) 116, 791, 1060, 1130
Sse9I AATT 4 cut(s) 376, 625, 805, 1181
SseBI AGGCCT 1 cut(s) 953
SsiI CCGC 4 cut(s) 321, 521, 878, 1162
StuI AGGCCT 1 cut(s) 953
StyD4I CCNGG 9 cut(s) 42, 66, 230, 870, 1078, 1090, 1140, 1164, 1221
StyI CCWWGG 3 cut(s) 725, 778, 1176
TaaI ACNGT 1 cut(s) 551
TaiI ACGT 2 cut(s) 225, 648
TaqI TCGA 7 cut(s) 108, 171, 262, 380, 394, 792, 1061
TasI AATT 4 cut(s) 376, 625, 805, 1181
TatI WGTACW 2 cut(s) 129, 465
TauI GCSGC 2 cut(s) 323, 523
TfiI GAWTC 7 cut(s) 112, 173, 237, 259, 382, 988, 1048
Tru1I TTAA 2 cut(s) 773, 882
Tru9I TTAA 2 cut(s) 773, 882
TscAI CASTG 5 cut(s) 91, 556, 584, 844, 937
TseFI GTSAC 3 cut(s) 641, 752, 932
TseI GCWGC 3 cut(s) 149, 503, 517
Tsp45I GTSAC 3 cut(s) 641, 752, 932
TspDTI ATGAA 3 cut(s) 428, 462, 635
TspRI CASTG 5 cut(s) 91, 556, 584, 844, 937
VpaK11BI GGWCC 1 cut(s) 1168
XagI CCTNNNNNAGG 2 cut(s) 541, 1077
XapI RAATTY 1 cut(s) 376
XhoI CTCGAG 2 cut(s) 791, 1060
XmiI GTMKAC 1 cut(s) 1067
XmnI GAANNNNTTC 2 cut(s) 224, 434
ZrmI AGTACT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.