Rorug06G0466100

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000255
Physical Location & Seq
Reverse (-)
59059917 .. 59061433
1517 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0466100.1

Sequence Viewer

Length: 1050 bp
ATGGAGGTAGCTATACCAAGCAGACCCACCTTGGATTTCGACTTCAACAGCGCTCGATCTTCGCCTTGCATTACTACTCCTTCAACTCCGAGACGCTTCGGCGACTACAGCTTCTTGAGTGCACCAACCAGTCCATCTCGAATGTCCGAGTTTTACAGAGAATTTGATGAGTTCTCCACAGTCAGTAGTAACTGGGAAGAAGAAGATGAGCCTGAACTTGCAGCACCACCCAAATCACCAAAACCAGACGACTTTGCGTTTGATGTTAGCGAGGAGGTAGACAGAGTTTCTCTCTCAGCTGAAGAGCTTTTCGATGGCGGCGTTATAAGACCTTTAAAGGCTCCTCCACCTCCTCAATTCTCAACAAAGAAGATCAATATTCGTCAAGCTCTTTCGCCCAGAAGGAGAAAAGATAGAGATTCATATCCATTCGCGGCGAACAATTCGACCGGAATGGAAACTCCCCAGAAGAGATCAGCTGTTTCTTCACAGCAACAAAGAGGAAGAGAAAGAGCTCCTCCAACCGTGTCTTCTTCAAGCCGCAGATCTTCAAGATCACTATCTCCTTTGAGGGTTTCAGAGTTTAACTGGGCACAAGAAGAAGAAGAGCTAAAACGACAAGAAGCAGCAGCAGCACAGAACAAGCAATTAGCTACAAAGGGTTCATTAATTTCATCTGCTACTGCTGCTTTGAATAGTTGCAAGGCTTCAAGAAAATGGAGGCTGAAAGATTTTCTGTTGTTTCGGAGCGCATCAGAGGGCAGAGCAACAGATAAAGATCCATTCAGAAAGTTCTGGAATCAGAAAAACGAGCATGCGAAGACCGCTAGCTCCAGCTTCAGATCCATAGACAGCCCGGCCTCTGTTTCTAGTTCAAGAAGAAGAGGACCTTCAGCACATGAGTTGCATTACACTGTGAACAAGGCAGTGTCCGATGATATGAAGAAGAAGACCTTCTTGCCTTACAAACAGGGCATTCTGGGAAGATTGGCTTTCAATCCTGCTGTTCATTCTCTGGCCAATGGATTTGGGTCTCTTTCGAGGTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

349

Amino Acids

38.95

Weight (kDa)

9.78

Isoelectric Point (pI)

79.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 100 - 321 2.7e-40 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 326
AccI GTMKAC 1 cut(s) 279
AccII CGCG 1 cut(s) 434
AciI CCGC 4 cut(s) 318, 434, 541, 825
AclWI GGATC 2 cut(s) 773, 837
AcoI YGGCCR 1 cut(s) 1017
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 3 cut(s) 321, 823, 876
AfeI AGCGCT 1 cut(s) 52
AgsI TTSAA 8 cut(s) 46, 84, 537, 552, 694, 711, 876, 997
AjuI GAANNNNNNNTTGG 2 cut(s) 514, 546
Alw21I GWGCWC 2 cut(s) 124, 517
Alw26I GTCTC 2 cut(s) 85, 1038
Alw44I GTGCAC 1 cut(s) 120
AlwI GGATC 2 cut(s) 773, 837
Aor51HI AGCGCT 1 cut(s) 52
AoxI GGCC 2 cut(s) 858, 1017
ApaLI GTGCAC 1 cut(s) 120
ApeKI GCWGC 5 cut(s) 221, 626, 629, 632, 686
ApoI RAATTY 1 cut(s) 161
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AseI ATTAAT 1 cut(s) 668
Asp700I GAANNNNTTC 1 cut(s) 953
AspLEI GCGC 2 cut(s) 53, 752
AspS9I GGNCC 2 cut(s) 887, 1044
AsuC2I CCSGG 1 cut(s) 857
AsuHPI GGTGA 1 cut(s) 228
AsuNHI GCTAGC 1 cut(s) 827
AvaII GGWCC 2 cut(s) 887, 1044
BaeGI GKGCMC 2 cut(s) 124, 595
BalI TGGCCA 1 cut(s) 1019
BanII GRGCYC 1 cut(s) 517
BbsI GAAGAC 3 cut(s) 522, 827, 956
Bbv12I GWGCWC 2 cut(s) 124, 517
BbvI GCAGC 5 cut(s) 233, 638, 641, 644, 673
BccI CCATC 2 cut(s) 142, 308
BcnI CCSGG 1 cut(s) 857
BcoDI GTCTC 2 cut(s) 85, 1038
BfaI CTAG 2 cut(s) 828, 870
BfmI CTRYAG 1 cut(s) 106
BfoI RGCGCY 1 cut(s) 54
BglII AGATCT 1 cut(s) 545
BisI GCNGC 8 cut(s) 222, 319, 435, 541, 627, 630, 633, 687
BlsI GCNGC 8 cut(s) 223, 320, 436, 542, 628, 631, 634, 688
Bme1390I CCNGG 1 cut(s) 857
Bme18I GGWCC 2 cut(s) 887, 1044
BmgT120I GGNCC 2 cut(s) 887, 1044
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 1 cut(s) 857
BmrI ACTGGG 2 cut(s) 202, 598
BmsI GCATC 1 cut(s) 761
BmtI GCTAGC 1 cut(s) 831
BmuI ACTGGG 2 cut(s) 202, 598
BpiI GAAGAC 3 cut(s) 522, 827, 956
BplI GAGNNNNNCTC 2 cut(s) 276, 308
BpmI CTGGAG 1 cut(s) 817
BpuEI CTTGAG 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 857
BsaBI GATNNNNATC 3 cut(s) 423, 559, 777
BsaI GGTCTC 1 cut(s) 1038
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 1 cut(s) 449
Bse1I ACTGG 3 cut(s) 129, 197, 593
Bse8I GATNNNNATC 3 cut(s) 423, 559, 777
BseDI CCNNGG 1 cut(s) 30
BseJI GATNNNNATC 3 cut(s) 423, 559, 777
BseMII CTCAG 1 cut(s) 309
BseNI ACTGG 3 cut(s) 129, 197, 593
BseRI GAGGAG 4 cut(s) 287, 333, 342, 507
BseSI GKGCMC 2 cut(s) 124, 595
BseXI GCAGC 5 cut(s) 233, 638, 641, 644, 673
Bsh1236I CGCG 1 cut(s) 434
Bsh1285I CGRYCG 1 cut(s) 450
BshFI GGCC 2 cut(s) 860, 1019
BsiEI CGRYCG 1 cut(s) 450
BsiHKAI GWGCWC 2 cut(s) 124, 517
BsiSI CCGG 2 cut(s) 450, 857
BsmAI GTCTC 2 cut(s) 85, 1038
BsmBI CGTCTC 1 cut(s) 85
BsmI GAATGC 1 cut(s) 975
BsnI GGCC 2 cut(s) 860, 1019
Bso31I GGTCTC 1 cut(s) 1038
Bsp1286I GDGCHC 3 cut(s) 124, 517, 595
Bsp143I GATC 7 cut(s) 56, 372, 473, 545, 554, 778, 842
BspACI CCGC 4 cut(s) 318, 434, 541, 825
BspANI GGCC 2 cut(s) 860, 1019
BspCNI CTCAG 1 cut(s) 308
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 1 cut(s) 342
BspOI GCTAGC 1 cut(s) 831
BspPI GGATC 2 cut(s) 773, 837
BspQI GCTCTTC 2 cut(s) 297, 600
BspTNI GGTCTC 1 cut(s) 1038
BsrI ACTGG 3 cut(s) 129, 197, 593
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 7 cut(s) 56, 372, 473, 545, 554, 778, 842
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 181, 526, 916
Bst6I CTCTTC 5 cut(s) 297, 464, 499, 600, 877
BstC8I GCNNGC 2 cut(s) 816, 829
BstDEI CTNAG 1 cut(s) 295
BstFNI CGCG 1 cut(s) 434
BstH2I RGCGCY 1 cut(s) 54
BstHHI GCGC 2 cut(s) 53, 752
BstKTI GATC 7 cut(s) 59, 375, 476, 548, 557, 781, 845
BstMAI GTCTC 2 cut(s) 85, 1038
BstMBI GATC 7 cut(s) 56, 372, 473, 545, 554, 778, 842
BstMCI CGRYCG 1 cut(s) 450
BstMWI GCNNNNNNNGC 4 cut(s) 108, 632, 686, 824
BstNSI RCATGY 1 cut(s) 818
BstSCI CCNGG 1 cut(s) 855
BstSFI CTRYAG 1 cut(s) 106
BstSLI GKGCMC 2 cut(s) 124, 595
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 5 cut(s) 233, 638, 641, 644, 673
BstV2I GAAGAC 3 cut(s) 522, 827, 956
BstX2I RGATCY 3 cut(s) 545, 778, 842
BstYI RGATCY 3 cut(s) 545, 778, 842
BsuRI GGCC 2 cut(s) 860, 1019
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 2 cut(s) 912, 933
Cac8I GCNNGC 2 cut(s) 816, 829
CfoI GCGC 2 cut(s) 53, 752
Cfr13I GGNCC 2 cut(s) 887, 1044
CseI GACGC 1 cut(s) 102
CviAII CATG 2 cut(s) 815, 899
DdeI CTNAG 1 cut(s) 295
DpnI GATC 7 cut(s) 58, 374, 475, 547, 556, 780, 844
DpnII GATC 7 cut(s) 56, 372, 473, 545, 554, 778, 842
DraI TTTAAA 1 cut(s) 336
EaeI YGGCCR 1 cut(s) 1017
Eam1104I CTCTTC 5 cut(s) 297, 464, 499, 600, 877
EarI CTCTTC 5 cut(s) 297, 464, 499, 600, 877
Ecl136II GAGCTC 1 cut(s) 515
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 517
Eco31I GGTCTC 1 cut(s) 1038
Eco47I GGWCC 2 cut(s) 887, 1044
Eco47III AGCGCT 1 cut(s) 52
Eco53kI GAGCTC 1 cut(s) 515
Eco57I CTGAAG 3 cut(s) 321, 823, 876
EcoICRI GAGCTC 1 cut(s) 515
EcoO109I RGGNCCY 2 cut(s) 887, 1044
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 517
ErhI CCWWGG 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 2 cut(s) 818, 902
FaiI YATR 7 cut(s) 14, 326, 424, 816, 848, 900, 941
FalI AAGNNNNNCTT 8 cut(s) 874, 906, 938, 970, 941, 973, 976, 1008
FatI CATG 2 cut(s) 814, 898
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 8 cut(s) 222, 319, 435, 541, 627, 630, 633, 687
FriOI GRGCYC 1 cut(s) 517
Fsp4HI GCNGC 8 cut(s) 222, 319, 435, 541, 627, 630, 633, 687
FspBI CTAG 2 cut(s) 828, 870
GlaI GCGC 2 cut(s) 52, 751
GluI GCNGC 8 cut(s) 222, 319, 435, 541, 627, 630, 633, 687
GsuI CTGGAG 1 cut(s) 817
HaeII RGCGCY 1 cut(s) 54
HaeIII GGCC 2 cut(s) 860, 1019
HapII CCGG 2 cut(s) 450, 857
HgaI GACGC 1 cut(s) 102
HhaI GCGC 2 cut(s) 53, 752
Hin1II CATG 2 cut(s) 818, 902
Hin6I GCGC 2 cut(s) 51, 750
HinP1I GCGC 2 cut(s) 51, 750
HinfI GANTC 2 cut(s) 419, 799
HpaII CCGG 2 cut(s) 450, 857
HphI GGTGA 1 cut(s) 228
Hpy166II GTNNAC 3 cut(s) 122, 280, 919
Hpy188I TCNGA 9 cut(s) 90, 148, 580, 747, 757, 788, 804, 842, 934
Hpy188III TCNNGA 7 cut(s) 115, 138, 552, 711, 796, 876, 1047
Hpy8I GTNNAC 3 cut(s) 122, 280, 919
HpyAV CCTTC 4 cut(s) 90, 396, 900, 964
HpyCH4III ACNGT 3 cut(s) 181, 526, 916
HpyCH4V TGCA 5 cut(s) 69, 122, 221, 702, 907
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 632, 686, 824
HpyF3I CTNAG 1 cut(s) 295
Hsp92II CATG 2 cut(s) 818, 902
HspAI GCGC 2 cut(s) 51, 750
Kzo9I GATC 7 cut(s) 56, 372, 473, 545, 554, 778, 842
LguI GCTCTTC 2 cut(s) 297, 600
LmnI GCTCC 4 cut(s) 346, 520, 747, 836
Lsp1109I GCAGC 5 cut(s) 233, 638, 641, 644, 673
LweI GCATC 1 cut(s) 761
MaeI CTAG 2 cut(s) 828, 870
MaeIII GTNAC 1 cut(s) 188
MalI GATC 7 cut(s) 58, 374, 475, 547, 556, 780, 844
MboI GATC 7 cut(s) 56, 372, 473, 545, 554, 778, 842
MflI RGATCY 3 cut(s) 545, 778, 842
MhlI GDGCHC 3 cut(s) 124, 517, 595
MlsI TGGCCA 1 cut(s) 1019
MluCI AATT 5 cut(s) 161, 356, 442, 647, 669
MluNI TGGCCA 1 cut(s) 1019
MmeI TCCRAC 1 cut(s) 545
Mox20I TGGCCA 1 cut(s) 1019
MroXI GAANNNNTTC 1 cut(s) 953
MscI TGGCCA 1 cut(s) 1019
MseI TTAA 3 cut(s) 335, 585, 668
Msp20I TGGCCA 1 cut(s) 1019
MspA1I CMGCKG 2 cut(s) 299, 479
MspI CCGG 2 cut(s) 450, 857
MspR9I CCNGG 1 cut(s) 857
Mva1269I GAATGC 1 cut(s) 975
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 4 cut(s) 108, 632, 686, 824
NciI CCSGG 1 cut(s) 857
NdeII GATC 7 cut(s) 56, 372, 473, 545, 554, 778, 842
NheI GCTAGC 1 cut(s) 827
NlaIII CATG 2 cut(s) 818, 902
NlaIV GGNNCC 1 cut(s) 342
NspI RCATGY 1 cut(s) 818
PaeI GCATGC 1 cut(s) 818
PciSI GCTCTTC 2 cut(s) 297, 600
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PctI GAATGC 1 cut(s) 975
PdmI GAANNNNTTC 1 cut(s) 953
PfeI GAWTC 2 cut(s) 419, 799
PkrI GCNGC 8 cut(s) 223, 320, 436, 542, 628, 631, 634, 688
PpuMI RGGWCCY 2 cut(s) 887, 1044
PshBI ATTAAT 1 cut(s) 668
PsiI TTATAA 1 cut(s) 326
Psp124BI GAGCTC 1 cut(s) 517
Psp5II RGGWCCY 2 cut(s) 887, 1044
PspN4I GGNNCC 1 cut(s) 342
PspPI GGNCC 2 cut(s) 887, 1044
PspPPI RGGWCCY 2 cut(s) 887, 1044
PsuI RGATCY 3 cut(s) 545, 778, 842
PvuII CAGCTG 2 cut(s) 299, 479
SacI GAGCTC 1 cut(s) 517
SapI GCTCTTC 2 cut(s) 297, 600
SaqAI TTAA 3 cut(s) 335, 585, 668
SatI GCNGC 8 cut(s) 222, 319, 435, 541, 627, 630, 633, 687
Sau3AI GATC 7 cut(s) 56, 372, 473, 545, 554, 778, 842
Sau96I GGNCC 2 cut(s) 887, 1044
ScrFI CCNGG 1 cut(s) 857
SduI GDGCHC 3 cut(s) 124, 517, 595
SfaNI GCATC 1 cut(s) 761
SfcI CTRYAG 1 cut(s) 106
SinI GGWCC 2 cut(s) 887, 1044
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
SphI GCATGC 1 cut(s) 818
Sse9I AATT 5 cut(s) 161, 356, 442, 647, 669
SsiI CCGC 4 cut(s) 318, 434, 541, 825
SspI AATATT 1 cut(s) 379
SspMI CTAG 2 cut(s) 828, 870
SstI GAGCTC 1 cut(s) 517
StyD4I CCNGG 1 cut(s) 855
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 181, 526, 916
TaqI TCGA 6 cut(s) 39, 55, 139, 312, 446, 1040
TasI AATT 5 cut(s) 161, 356, 442, 647, 669
TauI GCSGC 3 cut(s) 321, 437, 543
TfiI GAWTC 2 cut(s) 419, 799
Tru1I TTAA 3 cut(s) 335, 585, 668
Tru9I TTAA 3 cut(s) 335, 585, 668
TscAI CASTG 2 cut(s) 919, 933
TseI GCWGC 5 cut(s) 221, 626, 629, 632, 686
TspDTI ATGAA 5 cut(s) 411, 654, 663, 956, 998
TspRI CASTG 2 cut(s) 919, 933
VneI GTGCAC 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 887, 1044
VspI ATTAAT 1 cut(s) 668
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 953
XspI CTAG 2 cut(s) 828, 870
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.