Prupe.5G172300_v2.0.a1

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000255
Physical Location & Seq
Forward (+)
14689977 .. 14690531
555 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G172300.1

Sequence Viewer

Length: 531 bp
ATGGACGACGAGGTCTCCTTGGAGGTCTCCATTGCTTTGGGGCTCTTGCTGTCTGAACTGAGTGAAGAGCCATGGAAAGGAAAGGTGATCCAATTCAGCGATGAGCCTCAGCTACATTCCATACAAGGCGGCGACGATCTTAGGTACAAGTACGAGTTTGTGAGGAGGATGAACTGCGGTGTCGACCTTGATTTTGAGAAGCTGTTTGATTTGATTCTCCAAGTGGCTGTGAATGAGAACTTGAAGCCGGATCAGATGATCAAGAAGGTGTTGGTGTTGAGTCACCGGGACTTTGATAGTGCCAATGCGGCCGAAACTTCTTGGGAGAAAGGGTACGGGGATGTTGTGCCACACTACAACCCGGAGAAGCCGGTGGCGCCTCGTACACAACCGGGGTTGTCCATTCTCAATGGCTTCTCTAACAATCTGCTCAAGCTCTTCCTCGACAATGAAGGCGAAATTGGCCCCGACCAGCTCATGGAATTAGCCATATCCGATGAACGTTATCAAGCTTTCACTATAGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

177

Amino Acids

19.93

Weight (kDa)

4.45

Isoelectric Point (pI)

22.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 478
AccI GTMKAC 1 cut(s) 183
AciI CCGC 3 cut(s) 129, 177, 308
AclI AACGTT 1 cut(s) 502
AclWI GGATC 2 cut(s) 82, 258
AcoI YGGCCR 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 377
AfaI GTAC 4 cut(s) 146, 152, 335, 385
AfiI CCNNNNNNNGG 2 cut(s) 77, 478
AgsI TTSAA 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 444, 476
AleI CACNNNNGTG 1 cut(s) 521
AluBI AGCT 5 cut(s) 112, 202, 436, 475, 512
AluI AGCT 5 cut(s) 112, 202, 436, 475, 512
Alw26I GTCTC 2 cut(s) 19, 31
AlwI GGATC 2 cut(s) 82, 258
AoxI GGCC 2 cut(s) 309, 463
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 1 cut(s) 464
AsuC2I CCSGG 3 cut(s) 287, 362, 393
AsuHPI GGTGA 2 cut(s) 97, 275
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 108
BclI TGATCA 1 cut(s) 258
BcnI CCSGG 3 cut(s) 287, 362, 393
BcoDI GTCTC 2 cut(s) 19, 31
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 380
BglI GCCNNNNNGGC 1 cut(s) 308
BisI GCNGC 2 cut(s) 130, 309
BlsI GCNGC 2 cut(s) 131, 310
Bme1390I CCNGG 3 cut(s) 287, 362, 393
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 2 cut(s) 378, 466
BmrFI CCNGG 3 cut(s) 287, 362, 393
Bpu10I CCTNAGC 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 3 cut(s) 287, 362, 393
BsaHI GRCGYC 1 cut(s) 377
BsaI GGTCTC 2 cut(s) 19, 31
BsaJI CCNNGG 3 cut(s) 18, 71, 392
BsaXI ACNNNNNCTCC 3 cut(s) 29, 317, 347
Bsc4I CCNNNNNNNGG 2 cut(s) 77, 478
Bse118I RCCGGY 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 30
BseDI CCNNGG 3 cut(s) 18, 71, 392
BseGI GGATG 2 cut(s) 174, 346
BseLI CCNNNNNNNGG 2 cut(s) 77, 478
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 2 cut(s) 50, 122
BseRI GAGGAG 1 cut(s) 178
BseX3I CGGCCG 1 cut(s) 309
Bsh1285I CGRYCG 1 cut(s) 312
BshFI GGCC 2 cut(s) 311, 465
BshNI GGYRCC 1 cut(s) 376
BsiEI CGRYCG 1 cut(s) 312
BsiSI CCGG 5 cut(s) 248, 286, 362, 371, 392
BslFI GGGAC 1 cut(s) 302
BslI CCNNNNNNNGG 2 cut(s) 77, 478
BsmAI GTCTC 2 cut(s) 19, 31
BsmFI GGGAC 1 cut(s) 302
BsnI GGCC 2 cut(s) 311, 465
Bso31I GGTCTC 2 cut(s) 19, 31
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 4 cut(s) 87, 136, 250, 258
Bsp19I CCATGG 1 cut(s) 71
BspACI CCGC 3 cut(s) 129, 177, 308
BspANI GGCC 2 cut(s) 311, 465
BspCNI CTCAG 2 cut(s) 51, 121
BspLI GGNNCC 2 cut(s) 378, 466
BspPI GGATC 2 cut(s) 82, 258
BspQI GCTCTTC 2 cut(s) 60, 443
BspT107I GGYRCC 1 cut(s) 376
BspTNI GGTCTC 2 cut(s) 19, 31
BsrDI GCAATG 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 370
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 3 cut(s) 18, 71, 392
BssMI GATC 4 cut(s) 87, 136, 250, 258
BssNI GRCGYC 1 cut(s) 377
BssT1I CCWWGG 2 cut(s) 18, 71
Bst6I CTCTTC 2 cut(s) 60, 443
BstACI GRCGYC 1 cut(s) 377
BstDEI CTNAG 3 cut(s) 59, 108, 140
BstDSI CCRYGG 1 cut(s) 71
BstF5I GGATG 2 cut(s) 174, 346
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 1 cut(s) 379
BstKTI GATC 4 cut(s) 90, 139, 253, 261
BstMAI GTCTC 2 cut(s) 19, 31
BstMBI GATC 4 cut(s) 87, 136, 250, 258
BstMCI CGRYCG 1 cut(s) 312
BstMWI GCNNNNNNNGC 3 cut(s) 308, 376, 462
BstSCI CCNGG 3 cut(s) 285, 360, 391
BstSFI CTRYAG 1 cut(s) 519
BstXI CCANNNNNNTGG 1 cut(s) 37
BstZI CGGCCG 1 cut(s) 309
BsuRI GGCC 2 cut(s) 311, 465
BtgI CCRYGG 1 cut(s) 71
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 2 cut(s) 174, 346
CfoI GCGC 1 cut(s) 379
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 1 cut(s) 464
Csp6I GTAC 4 cut(s) 145, 151, 334, 384
CviAII CATG 2 cut(s) 72, 478
CviQI GTAC 4 cut(s) 145, 151, 334, 384
DdeI CTNAG 3 cut(s) 59, 108, 140
DinI GGCGCC 1 cut(s) 378
DpnI GATC 4 cut(s) 89, 138, 252, 260
DpnII GATC 4 cut(s) 87, 136, 250, 258
DrdI GACNNNNNNGTC 1 cut(s) 11
DseDI GACNNNNNNGTC 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 309
EagI CGGCCG 1 cut(s) 309
Eam1104I CTCTTC 2 cut(s) 60, 443
EarI CTCTTC 2 cut(s) 60, 443
EclXI CGGCCG 1 cut(s) 309
Eco130I CCWWGG 2 cut(s) 18, 71
Eco24I GRGCYC 1 cut(s) 45
Eco31I GGTCTC 2 cut(s) 19, 31
Eco52I CGGCCG 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 18, 71
EcoT38I GRGCYC 1 cut(s) 45
EgeI GGCGCC 1 cut(s) 378
EheI GGCGCC 1 cut(s) 378
ErhI CCWWGG 2 cut(s) 18, 71
FaeI CATG 2 cut(s) 75, 481
FaiI YATR 5 cut(s) 73, 122, 479, 491, 521
FaqI GGGAC 1 cut(s) 302
FatI CATG 2 cut(s) 71, 477
FbaI TGATCA 1 cut(s) 258
FblI GTMKAC 1 cut(s) 183
Fnu4HI GCNGC 2 cut(s) 130, 309
FokI GGATG 2 cut(s) 181, 353
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 2 cut(s) 130, 309
GlaI GCGC 1 cut(s) 378
GluI GCNGC 2 cut(s) 130, 309
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 2 cut(s) 311, 465
HapII CCGG 5 cut(s) 248, 286, 362, 371, 392
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 377
Hin1II CATG 2 cut(s) 75, 481
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 510
HinfI GANTC 2 cut(s) 214, 280
HpaII CCGG 5 cut(s) 248, 286, 362, 371, 392
HphI GGTGA 2 cut(s) 97, 275
Hpy166II GTNNAC 3 cut(s) 184, 386, 526
Hpy188I TCNGA 3 cut(s) 55, 255, 496
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 3 cut(s) 184, 386, 526
Hpy99I CGWCG 2 cut(s) 11, 137
HpyAV CCTTC 2 cut(s) 259, 446
HpyCH4IV ACGT 1 cut(s) 502
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 376, 462
HpyF3I CTNAG 3 cut(s) 59, 108, 140
HpySE526I ACGT 1 cut(s) 502
Hsp92I GRCGYC 1 cut(s) 377
Hsp92II CATG 2 cut(s) 75, 481
HspAI GCGC 1 cut(s) 377
KasI GGCGCC 1 cut(s) 376
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 4 cut(s) 87, 136, 250, 258
LguI GCTCTTC 2 cut(s) 60, 443
LpnPI CCDG 6 cut(s) 261, 299, 375, 384, 405, 485
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 1 cut(s) 281
MalI GATC 4 cut(s) 89, 138, 252, 260
MboI GATC 4 cut(s) 87, 136, 250, 258
MboII GAAGA 2 cut(s) 77, 430
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 3 cut(s) 92, 459, 482
Mly113I GGCGCC 1 cut(s) 377
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 7 cut(s) 4, 16, 117, 156, 159, 390, 452
MslI CAYNNNNRTG 1 cut(s) 521
MspI CCGG 5 cut(s) 248, 286, 362, 371, 392
MspR9I CCNGG 3 cut(s) 287, 362, 393
MwoI GCNNNNNNNGC 3 cut(s) 308, 376, 462
NarI GGCGCC 1 cut(s) 377
NciI CCSGG 3 cut(s) 287, 362, 393
NcoI CCATGG 1 cut(s) 71
NdeII GATC 4 cut(s) 87, 136, 250, 258
NlaIII CATG 2 cut(s) 75, 481
NlaIV GGNNCC 2 cut(s) 378, 466
NmuCI GTSAC 1 cut(s) 281
OliI CACNNNNGTG 1 cut(s) 521
PciSI GCTCTTC 2 cut(s) 60, 443
PfeI GAWTC 1 cut(s) 214
PflFI GACNNNGTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 478
PkrI GCNGC 2 cut(s) 131, 310
PleI GAGTC 1 cut(s) 288
PluTI GGCGCC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 288
Psp1406I AACGTT 1 cut(s) 502
PspN4I GGNNCC 2 cut(s) 378, 466
PspPI GGNCC 1 cut(s) 464
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 4 cut(s) 146, 152, 335, 385
RsaNI GTAC 4 cut(s) 145, 151, 334, 384
RseI CAYNNNNRTG 1 cut(s) 521
SalI GTCGAC 1 cut(s) 182
SapI GCTCTTC 2 cut(s) 60, 443
SatI GCNGC 2 cut(s) 130, 309
Sau3AI GATC 4 cut(s) 87, 136, 250, 258
Sau96I GGNCC 1 cut(s) 464
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 3 cut(s) 287, 362, 393
SduI GDGCHC 1 cut(s) 45
SfcI CTRYAG 1 cut(s) 519
SfoI GGCGCC 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 3 cut(s) 92, 459, 482
SsiI CCGC 3 cut(s) 129, 177, 308
SspDI GGCGCC 1 cut(s) 376
StyD4I CCNGG 3 cut(s) 285, 360, 391
StyI CCWWGG 2 cut(s) 18, 71
TaiI ACGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 183, 444
TasI AATT 3 cut(s) 92, 459, 482
TauI GCSGC 2 cut(s) 132, 311
TfiI GAWTC 1 cut(s) 214
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 3 cut(s) 185, 465, 513
Tth111I GACNNNGTC 1 cut(s) 11
Van91I CCANNNNNTGG 1 cut(s) 478
XmiI GTMKAC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.