Rh7CG230100

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000255
Physical Location & Seq
Reverse (-)
21506841 .. 21509096
2256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG230100.1

Sequence Viewer

Length: 1989 bp
ATGGCAGCTCCTCCAAAACTTCTTCTTGGTCCTCCAGGACCCAAACCATCAGACTCCACCACCACCACCACAACGAAACCTCCGTTGGGACGCACCGAGAACAACTCCGCCACCTACCTCTCCTCCGGCAACCCCTGCCTCGACCTCTTCTTCCACATCGTACCCGACACCCCGTCCTCTTACATCAACGAACAACTTCCCAAGTCCTGGGCCCACAACGCCCTAACCACCCTCAAGCTAATCTGCAACCTCCGCGGCGTCCGCGGCACCGGAAAGTCCGACAAAGAAGCCTTCTTCACGGCAGCATTCTGGCTCCACAGACACCACCCCAAAACCCTAGCCTGCAATCTCGCCTCTTTCGCCCAATTCGGGTGCTTCAAAGACCTCCCCGAGATTCTCTACCGCCTTCTAGAAGGCCAAGACATAAGGAAGAACCGCAAGGCCGAGTGGTCCATGAAAAAGAAACTCTCCCGCCGCTGTAGAGGTTCAAAATCTCCGTCACGCTCAAGTTCTAGCTCAAGTTCTGGCTCAAGTTCTAGGTCATACTCAAGAGATAGAGATAGCAACTGTACGTCTCGATCAAGAACACGATCTCCGTCGCCCCCGCAGCGGCGGAGGCCAGGTTTTAAGTCGAGAACCAACAAAAGGAAGAGGCTGAGTTACACCACCCCGAAGGAGCCGAGGGAGGAGAGGGTGGTGAAGGCGACGGAGAGGACAAACTCGGAAAAGGAAAAGGCAAGTGTTTTGAGAAAACAGAAATTCACTGACATGGCAAACAAGGGCGTCTCGAGATACGATCGCGACCCGGATTACCGGTTCCTCCACGAGCGCGTCTCGGATCTCTTTGCCGCTTGCTTGAAATCCGACCTCGAAAATCTCAACGCTAATGAGCTCAACAACATCAGCCTCGCCGCCAAGTGGTGCCCTTCGCTCGACTCGTCTTTTGATCGCGCCACTCTCCTCTGCGAAAGGATTGCAAAGAAGGTTTTCCCGCGCGAGTCGTGTCCGGAATACGACGGCGTTTTGGAGCAGCATTATGCTTACAGAGTCCGGGACCGGCTGAGGAAGGAAGTGCTTGTTCCTTTAAGGAAGGCTCTGGAGTTACCGGAGGTTTACATAGGGGCACGAAAATGGAGGTCCCTTCCTTACAATAGGGTCCCCTCCGTGGCCATGAAGCTTTACAAGGAAACGTTTTTTAAGCAAGACCTAGTGAGGTTTTCGAAGTATTTGGTTGATGCAAAGGCCGGGAAGACCACCATTGCGGCTGGTGCTCTGCTGCCGCACGAGATCATTGCCTCGAATTCAAGAGGCAGTGATGGCGTGGCGGAGCTTCAGTGGAAGAGGATGGTGGAGGATTTGGTGAAGAAGGGGCAGCTGAAGAACTGCTTGGCTGTGTGTGACGTGTCAGGCAGCATGGAGGGGCTTCCTATGGATGTGAGTGTGGCCTTGGGGCTTTTGGTTTCGGAATTAAGTGAAAAGCCGTGGAAAGGGAAGATCATCACTTTTAGTGAGAAGCCTGAGCTGCATTTGATTGAAGGTGAAGATTTGAAGTCAAAGTGTAAGTTTATGAGGTCAATGGACTCGGGGTTCAACACCGATTTTCAAAAGGTGTTTGATCTGATACTTAGAGTGGCTGTGAAGGGGAACTTGAAGCCTGACGATATGATAAAGAGGGTGTTTGTGTTTAGTGACATGGAGTTTGATGAGGCTAATCATGAGAATACTTGGGAGACGGATTATGAGGCGATTCAGAGGAGGTTCAAGAGGAATGGTTATGGGAATGTGGTGCCTCAGATTGTGTTTTGGAATCTGAGGCACTCTATGTCTACGCCGGTAACGGAGAAGCAACCTGGGGTGGCAATGTTGAGTGGCTTTTCAAAGAATTTGTTGAAGTTGTTCTTGGATAATGATGGGGAAGTTAGCCCGGATATGGCCATGGAGTTGGCCATCTCCGGCGATGAGTATCAGAAGCTGGCTGTGGTCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

662

Amino Acids

75.05

Weight (kDa)

9.53

Isoelectric Point (pI)

47.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 32 - 459 4.9e-132 Domain of unknown function (DUF2828)
DUF7788 PF25043 461 - 641 1.2e-79 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 266, 921, 1786
AccB7I CCANNNNNTGG 1 cut(s) 207
AccI GTMKAC 2 cut(s) 1826, 1983
AccII CGCG 7 cut(s) 255, 264, 801, 831, 951, 994, 996
AccIII TCCGGA 1 cut(s) 1006
AclI AACGTT 1 cut(s) 1190
AclWI GGATC 1 cut(s) 846
AcoI YGGCCR 3 cut(s) 1167, 1932, 1944
AcsI RAATTY 3 cut(s) 758, 1300, 1882
AcuI CTGAAG 2 cut(s) 1316, 1397
AcyI GRCGYC 2 cut(s) 258, 783
AfaI GTAC 2 cut(s) 162, 571
AfiI CCNNNNNNNGG 9 cut(s) 86, 207, 369, 609, 645, 918, 1165, 1487, 1930
AflIII ACRYGT 1 cut(s) 1401
AgeI ACCGGT 1 cut(s) 813
AhdI GACNNNNNGTC 1 cut(s) 172
AjiI CACGTC 1 cut(s) 1402
AjnI CCWGG 4 cut(s) 34, 206, 619, 1849
AjuI GAANNNNNNNTTGG 6 cut(s) 68, 100, 1370, 1402, 1883, 1915
AloI GAACNNNNNNTCC 6 cut(s) 577, 609, 800, 832, 1571, 1603
AluBI AGCT 9 cut(s) 8, 238, 516, 892, 1177, 1330, 1375, 1522, 1972
AluI AGCT 9 cut(s) 8, 238, 516, 892, 1177, 1330, 1375, 1522, 1972
Alw21I GWGCWC 2 cut(s) 894, 1273
Alw26I GTCTC 4 cut(s) 579, 790, 838, 1724
AlwI GGATC 1 cut(s) 846
AlwNI CAGNNNCTG 1 cut(s) 1972
Ama87I CYCGRG 3 cut(s) 389, 787, 1582
Aor13HI TCCGGA 1 cut(s) 1006
AoxI GGCC 9 cut(s) 210, 415, 441, 617, 1167, 1242, 1443, 1932, 1944
ApaI GGGCCC 1 cut(s) 214
ApeKI GCWGC 8 cut(s) 5, 302, 607, 1030, 1276, 1372, 1410, 1522
ApoI RAATTY 3 cut(s) 758, 1300, 1882
ArsI GACNNNNNNTTYG 6 cut(s) 482, 514, 926, 958, 1682, 1714
AsiGI ACCGGT 1 cut(s) 813
Asp700I GAANNNNTTC 3 cut(s) 195, 986, 1895
AspLEI GCGC 3 cut(s) 831, 953, 996
AspS9I GGNCC 8 cut(s) 29, 38, 210, 211, 450, 1054, 1137, 1156
AsuC2I CCSGG 4 cut(s) 806, 1052, 1246, 1925
AsuHPI GGTGA 3 cut(s) 709, 1372, 1550
AsuII TTCGAA 1 cut(s) 1220
AvaI CYCGRG 3 cut(s) 389, 787, 1582
AvaII GGWCC 6 cut(s) 29, 38, 450, 1054, 1137, 1156
BaeGI GKGCMC 3 cut(s) 214, 926, 1126
BalI TGGCCA 3 cut(s) 1169, 1934, 1946
BanI GGYRCC 3 cut(s) 266, 921, 1786
BanII GRGCYC 2 cut(s) 214, 894
BauI CACGAG 2 cut(s) 824, 1283
BbsI GAAGAC 1 cut(s) 1256
Bbv12I GWGCWC 2 cut(s) 894, 1273
BbvCI CCTCAGC 1 cut(s) 1061
BbvI GCAGC 8 cut(s) 17, 314, 619, 1042, 1263, 1384, 1422, 1509
BccI CCATC 5 cut(s) 55, 1310, 1339, 1904, 1955
BceAI ACGGC 3 cut(s) 315, 1033, 1465
BcgI CGANNNNNNTGC 4 cut(s) 956, 990, 1274, 1308
BciT130I CCWGG 4 cut(s) 36, 208, 621, 1851
BcnI CCSGG 4 cut(s) 806, 1052, 1246, 1925
BcoDI GTCTC 4 cut(s) 579, 790, 838, 1724
BfaI CTAG 5 cut(s) 338, 410, 513, 537, 1208
BfmI CTRYAG 1 cut(s) 478
Bme1390I CCNGG 8 cut(s) 36, 208, 621, 806, 1052, 1246, 1851, 1925
Bme18I GGWCC 6 cut(s) 29, 38, 450, 1054, 1137, 1156
BmeRI GACNNNNNGTC 1 cut(s) 172
BmeT110I CYCGRG 3 cut(s) 389, 787, 1582
BmgBI CACGTC 1 cut(s) 1402
BmgT120I GGNCC 8 cut(s) 29, 38, 210, 211, 450, 1054, 1137, 1156
BmrFI CCNGG 8 cut(s) 36, 208, 621, 806, 1052, 1246, 1851, 1925
BmsI GCATC 1 cut(s) 1225
BpiI GAAGAC 1 cut(s) 1256
BplI GAGNNNNNCTC 4 cut(s) 89, 121, 818, 850
BpmI CTGGAG 2 cut(s) 18, 1118
Bpu10I CCTNAGC 2 cut(s) 1061, 1518
Bpu14I TTCGAA 1 cut(s) 1220
BpuEI CTTGAG 5 cut(s) 218, 490, 502, 514, 532
BpuMI CCSGG 4 cut(s) 806, 1052, 1246, 1925
BsaBI GATNNNNATC 1 cut(s) 1962
BsaHI GRCGYC 2 cut(s) 258, 783
BsaJI CCNNGG 9 cut(s) 207, 253, 262, 680, 1164, 1446, 1481, 1850, 1935
BsaWI WCCGGW 4 cut(s) 269, 813, 1006, 1105
Bsc4I CCNNNNNNNGG 9 cut(s) 86, 207, 369, 609, 645, 918, 1165, 1487, 1930
Bse118I RCCGGY 3 cut(s) 813, 1056, 1831
Bse3DI GCAATG 3 cut(s) 1257, 1290, 1866
Bse8I GATNNNNATC 1 cut(s) 1962
BseAI TCCGGA 1 cut(s) 1006
BseBI CCWGG 4 cut(s) 36, 208, 621, 1851
BseDI CCNNGG 9 cut(s) 207, 253, 262, 680, 1164, 1446, 1481, 1850, 1935
BseGI GGATG 2 cut(s) 1350, 1438
BseJI GATNNNNATC 1 cut(s) 1962
BseLI CCNNNNNNNGG 9 cut(s) 86, 207, 369, 609, 645, 918, 1165, 1487, 1930
BseMI GCAATG 3 cut(s) 1257, 1290, 1866
BseMII CTCAG 5 cut(s) 647, 1052, 1509, 1802, 1805
BseRI GAGGAG 4 cut(s) 112, 701, 950, 1768
BseSI GKGCMC 3 cut(s) 214, 926, 1126
BseXI GCAGC 8 cut(s) 17, 314, 619, 1042, 1263, 1384, 1422, 1509
Bsh1236I CGCG 7 cut(s) 255, 264, 801, 831, 951, 994, 996
Bsh1285I CGRYCG 1 cut(s) 799
BshFI GGCC 9 cut(s) 212, 417, 443, 619, 1169, 1244, 1445, 1934, 1946
BshNI GGYRCC 3 cut(s) 266, 921, 1786
BshTI ACCGGT 1 cut(s) 813
BsiEI CGRYCG 1 cut(s) 799
BsiHKAI GWGCWC 2 cut(s) 894, 1273
BsiHKCI CYCGRG 3 cut(s) 389, 787, 1582
BslFI GGGAC 4 cut(s) 102, 1067, 1123, 1142
BslI CCNNNNNNNGG 9 cut(s) 86, 207, 369, 609, 645, 918, 1165, 1487, 1930
BsmAI GTCTC 4 cut(s) 579, 790, 838, 1724
BsmBI CGTCTC 4 cut(s) 579, 790, 838, 1724
BsmFI GGGAC 4 cut(s) 102, 1067, 1123, 1142
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 9 cut(s) 212, 417, 443, 619, 1169, 1244, 1445, 1934, 1946
BsoBI CYCGRG 3 cut(s) 389, 787, 1582
Bsp119I TTCGAA 1 cut(s) 1220
Bsp120I GGGCCC 1 cut(s) 210
Bsp1286I GDGCHC 5 cut(s) 214, 894, 926, 1126, 1273
Bsp13I TCCGGA 1 cut(s) 1006
Bsp143I GATC 8 cut(s) 578, 590, 796, 838, 946, 1287, 1494, 1615
Bsp19I CCATGG 1 cut(s) 1935
Bsp68I TCGCGA 1 cut(s) 801
BspANI GGCC 9 cut(s) 212, 417, 443, 619, 1169, 1244, 1445, 1934, 1946
BspCNI CTCAG 5 cut(s) 648, 1053, 1510, 1803, 1804
BspEI TCCGGA 1 cut(s) 1006
BspFNI CGCG 7 cut(s) 255, 264, 801, 831, 951, 994, 996
BspHI TCATGA 1 cut(s) 1714
BspPI GGATC 1 cut(s) 846
BspT104I TTCGAA 1 cut(s) 1220
BspT107I GGYRCC 3 cut(s) 266, 921, 1786
BsrDI GCAATG 3 cut(s) 1257, 1290, 1866
BsrFI RCCGGY 3 cut(s) 813, 1056, 1831
BssAI RCCGGY 3 cut(s) 813, 1056, 1831
BssECI CCNNGG 9 cut(s) 207, 253, 262, 680, 1164, 1446, 1481, 1850, 1935
BssMI GATC 8 cut(s) 578, 590, 796, 838, 946, 1287, 1494, 1615
BssNI GRCGYC 2 cut(s) 258, 783
BssSI CACGAG 2 cut(s) 824, 1283
BssT1I CCWWGG 2 cut(s) 1446, 1935
Bst2BI CACGAG 2 cut(s) 824, 1283
Bst2UI CCWGG 4 cut(s) 36, 208, 621, 1851
Bst4CI ACNGT 1 cut(s) 569
Bst6I CTCTTC 3 cut(s) 152, 644, 1334
BstACI GRCGYC 2 cut(s) 258, 783
BstAPI GCANNNNNTGC 1 cut(s) 135
BstBI TTCGAA 1 cut(s) 1220
BstC8I GCNNGC 3 cut(s) 343, 853, 1974
BstDEI CTNAG 6 cut(s) 656, 1061, 1518, 1625, 1791, 1811
BstDSI CCRYGG 5 cut(s) 253, 262, 1164, 1481, 1935
BstF5I GGATG 2 cut(s) 1350, 1438
BstFNI CGCG 7 cut(s) 255, 264, 801, 831, 951, 994, 996
BstHHI GCGC 3 cut(s) 831, 953, 996
BstKTI GATC 8 cut(s) 581, 593, 799, 841, 949, 1290, 1497, 1618
BstMAI GTCTC 4 cut(s) 579, 790, 838, 1724
BstMBI GATC 8 cut(s) 578, 590, 796, 838, 946, 1287, 1494, 1615
BstMCI CGRYCG 1 cut(s) 799
BstNI CCWGG 4 cut(s) 36, 208, 621, 1851
BstSCI CCNGG 8 cut(s) 34, 206, 619, 804, 1050, 1244, 1849, 1923
BstSFI CTRYAG 1 cut(s) 478
BstSLI GKGCMC 3 cut(s) 214, 926, 1126
BstUI CGCG 7 cut(s) 255, 264, 801, 831, 951, 994, 996
BstV1I GCAGC 8 cut(s) 17, 314, 619, 1042, 1263, 1384, 1422, 1509
BstV2I GAAGAC 1 cut(s) 1256
BstX2I RGATCY 1 cut(s) 838
BstXI CCANNNNNNTGG 1 cut(s) 1942
BstYI RGATCY 1 cut(s) 838
BsuRI GGCC 9 cut(s) 212, 417, 443, 619, 1169, 1244, 1445, 1934, 1946
BtgI CCRYGG 5 cut(s) 253, 262, 1164, 1481, 1935
BtgZI GCGATG 1 cut(s) 1971
BtrI CACGTC 1 cut(s) 1402
BtsCI GGATG 2 cut(s) 1350, 1438
BtsI GCAGTG 1 cut(s) 1318
BtsIMutI CAGTG 3 cut(s) 762, 1318, 1340
BtuMI TCGCGA 1 cut(s) 801
Cac8I GCNNGC 3 cut(s) 343, 853, 1974
CaiI CAGNNNCTG 1 cut(s) 1972
CciI TCATGA 1 cut(s) 1714
CfoI GCGC 3 cut(s) 831, 953, 996
Cfr10I RCCGGY 3 cut(s) 813, 1056, 1831
Cfr13I GGNCC 8 cut(s) 29, 38, 210, 211, 450, 1054, 1137, 1156
Cfr42I CCGCGG 2 cut(s) 256, 265
CseI GACGC 4 cut(s) 99, 247, 772, 820
Csp6I GTAC 2 cut(s) 161, 570
CspAI ACCGGT 1 cut(s) 813
CviAII CATG 7 cut(s) 454, 769, 1171, 1414, 1693, 1715, 1936
CviQI GTAC 2 cut(s) 161, 570
DdeI CTNAG 6 cut(s) 656, 1061, 1518, 1625, 1791, 1811
DpnI GATC 8 cut(s) 580, 592, 798, 840, 948, 1289, 1496, 1617
DpnII GATC 8 cut(s) 578, 590, 796, 838, 946, 1287, 1494, 1615
DriI GACNNNNNGTC 1 cut(s) 172
EaeI YGGCCR 3 cut(s) 1167, 1932, 1944
Eam1104I CTCTTC 3 cut(s) 152, 644, 1334
Eam1105I GACNNNNNGTC 1 cut(s) 172
EarI CTCTTC 3 cut(s) 152, 644, 1334
EciI GGCGGA 3 cut(s) 97, 628, 1340
Ecl136II GAGCTC 1 cut(s) 892
Eco130I CCWWGG 2 cut(s) 1446, 1935
Eco24I GRGCYC 2 cut(s) 214, 894
Eco47I GGWCC 6 cut(s) 29, 38, 450, 1054, 1137, 1156
Eco53kI GAGCTC 1 cut(s) 892
Eco57I CTGAAG 2 cut(s) 1316, 1397
Eco88I CYCGRG 3 cut(s) 389, 787, 1582
EcoICRI GAGCTC 1 cut(s) 892
EcoO109I RGGNCCY 3 cut(s) 38, 1137, 1156
EcoRI GAATTC 1 cut(s) 1300
EcoRII CCWGG 4 cut(s) 34, 206, 619, 1849
EcoT14I CCWWGG 2 cut(s) 1446, 1935
EcoT38I GRGCYC 2 cut(s) 214, 894
ErhI CCWWGG 2 cut(s) 1446, 1935
Esp3I CGTCTC 4 cut(s) 579, 790, 838, 1724
FaeI CATG 7 cut(s) 457, 772, 1174, 1417, 1696, 1718, 1939
FalI AAGNNNNNCTT 6 cut(s) 1370, 1402, 1631, 1663, 1883, 1915
FaqI GGGAC 4 cut(s) 102, 1067, 1123, 1142
FatI CATG 7 cut(s) 453, 768, 1170, 1413, 1692, 1714, 1935
FauI CCCGC 3 cut(s) 479, 612, 999
FblI GTMKAC 2 cut(s) 1826, 1983
FokI GGATG 2 cut(s) 1357, 1445
FriOI GRGCYC 2 cut(s) 214, 894
FspBI CTAG 5 cut(s) 338, 410, 513, 537, 1208
GlaI GCGC 3 cut(s) 830, 952, 995
GsuI CTGGAG 2 cut(s) 18, 1118
HaeIII GGCC 9 cut(s) 212, 417, 443, 619, 1169, 1244, 1445, 1934, 1946
HgaI GACGC 4 cut(s) 99, 247, 772, 820
HhaI GCGC 3 cut(s) 831, 953, 996
Hin1I GRCGYC 2 cut(s) 258, 783
Hin1II CATG 7 cut(s) 457, 772, 1174, 1417, 1696, 1718, 1939
Hin6I GCGC 3 cut(s) 829, 951, 994
HinP1I GCGC 3 cut(s) 829, 951, 994
HincII GTYRAC 1 cut(s) 1984
HindII GTYRAC 1 cut(s) 1984
HindIII AAGCTT 1 cut(s) 1175
HinfI GANTC 8 cut(s) 53, 394, 935, 998, 1047, 1580, 1747, 1807
HphI GGTGA 3 cut(s) 709, 1372, 1550
Hpy166II GTNNAC 3 cut(s) 1114, 1827, 1984
Hpy8I GTNNAC 3 cut(s) 1114, 1827, 1984
Hpy99I CGWCG 3 cut(s) 601, 709, 1019
HpyCH4III ACNGT 1 cut(s) 569
HpyCH4IV ACGT 3 cut(s) 572, 1190, 1401
HpyCH4V TGCA 5 cut(s) 246, 345, 977, 1238, 1525
HpyF3I CTNAG 6 cut(s) 656, 1061, 1518, 1625, 1791, 1811
HpySE526I ACGT 3 cut(s) 572, 1190, 1401
Hsp92I GRCGYC 2 cut(s) 258, 783
Hsp92II CATG 7 cut(s) 457, 772, 1174, 1417, 1696, 1718, 1939
HspAI GCGC 3 cut(s) 829, 951, 994
KflI GGGWCCC 1 cut(s) 1156
Kpn2I TCCGGA 1 cut(s) 1006
KspI CCGCGG 2 cut(s) 256, 265
Kzo9I GATC 8 cut(s) 578, 590, 796, 838, 946, 1287, 1494, 1615
LmnI GCTCC 5 cut(s) 13, 318, 676, 1027, 1327
Lsp1109I GCAGC 8 cut(s) 17, 314, 619, 1042, 1263, 1384, 1422, 1509
LweI GCATC 1 cut(s) 1225
MaeI CTAG 5 cut(s) 338, 410, 513, 537, 1208
MaeII ACGT 3 cut(s) 572, 1190, 1401
MaeIII GTNAC 6 cut(s) 498, 659, 1101, 1397, 1688, 1834
MalI GATC 8 cut(s) 580, 592, 798, 840, 948, 1289, 1496, 1617
MboI GATC 8 cut(s) 578, 590, 796, 838, 946, 1287, 1494, 1615
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 5 cut(s) 214, 894, 926, 1126, 1273
MlsI TGGCCA 3 cut(s) 1169, 1934, 1946
MluCI AATT 5 cut(s) 365, 758, 1300, 1466, 1882
MluNI TGGCCA 3 cut(s) 1169, 1934, 1946
MlyI GAGTC 5 cut(s) 47, 929, 1007, 1056, 1574
MmeI TCCRAC 2 cut(s) 303, 888
Mox20I TGGCCA 3 cut(s) 1169, 1934, 1946
MroI TCCGGA 1 cut(s) 1006
MroXI GAANNNNTTC 3 cut(s) 195, 986, 1895
MscI TGGCCA 3 cut(s) 1169, 1934, 1946
MseI TTAA 4 cut(s) 627, 1085, 1197, 1469
MslI CAYNNNNRTG 2 cut(s) 767, 1129
Msp20I TGGCCA 3 cut(s) 1169, 1934, 1946
MspA1I CMGCKG 5 cut(s) 255, 264, 477, 610, 1375
MspR9I CCNGG 8 cut(s) 36, 208, 621, 806, 1052, 1246, 1851, 1925
Mva1269I GAATGC 1 cut(s) 305
MvaI CCWGG 4 cut(s) 36, 208, 621, 1851
MvnI CGCG 7 cut(s) 255, 264, 801, 831, 951, 994, 996
NciI CCSGG 4 cut(s) 806, 1052, 1246, 1925
NcoI CCATGG 1 cut(s) 1935
NdeII GATC 8 cut(s) 578, 590, 796, 838, 946, 1287, 1494, 1615
NlaIII CATG 7 cut(s) 457, 772, 1174, 1417, 1696, 1718, 1939
NmeAIII GCCGAG 2 cut(s) 469, 705
NmuCI GTSAC 3 cut(s) 498, 1397, 1688
NruI TCGCGA 1 cut(s) 801
NspV TTCGAA 1 cut(s) 1220
PaeR7I CTCGAG 1 cut(s) 787
PagI TCATGA 1 cut(s) 1714
PcsI WCGNNNNNNNCGW 2 cut(s) 80, 935
PctI GAATGC 1 cut(s) 305
PdmI GAANNNNTTC 3 cut(s) 195, 986, 1895
PfeI GAWTC 3 cut(s) 394, 1747, 1807
PflMI CCANNNNNTGG 1 cut(s) 207
PfoI TCCNGGA 2 cut(s) 34, 1050
PinAI ACCGGT 1 cut(s) 813
Ple19I CGATCG 1 cut(s) 799
PleI GAGTC 5 cut(s) 47, 929, 1006, 1055, 1574
PpsI GAGTC 5 cut(s) 47, 929, 1006, 1055, 1574
PpuMI RGGWCCY 3 cut(s) 38, 1137, 1156
Psp124BI GAGCTC 1 cut(s) 894
Psp1406I AACGTT 1 cut(s) 1190
Psp5II RGGWCCY 3 cut(s) 38, 1137, 1156
Psp6I CCWGG 4 cut(s) 34, 206, 619, 1849
PspGI CCWGG 4 cut(s) 34, 206, 619, 1849
PspOMI GGGCCC 1 cut(s) 210
PspPI GGNCC 8 cut(s) 29, 38, 210, 211, 450, 1054, 1137, 1156
PspPPI RGGWCCY 3 cut(s) 38, 1137, 1156
PstNI CAGNNNCTG 1 cut(s) 1972
PsuI RGATCY 1 cut(s) 838
PvuI CGATCG 1 cut(s) 799
PvuII CAGCTG 1 cut(s) 1375
RruI TCGCGA 1 cut(s) 801
RsaI GTAC 2 cut(s) 162, 571
RsaNI GTAC 2 cut(s) 161, 570
RseI CAYNNNNRTG 2 cut(s) 767, 1129
SacI GAGCTC 1 cut(s) 894
SacII CCGCGG 2 cut(s) 256, 265
SalI GTCGAC 1 cut(s) 1982
SaqAI TTAA 4 cut(s) 627, 1085, 1197, 1469
Sau3AI GATC 8 cut(s) 578, 590, 796, 838, 946, 1287, 1494, 1615
Sau96I GGNCC 8 cut(s) 29, 38, 210, 211, 450, 1054, 1137, 1156
SchI GAGTC 5 cut(s) 47, 929, 1007, 1056, 1574
ScrFI CCNGG 8 cut(s) 36, 208, 621, 806, 1052, 1246, 1851, 1925
SduI GDGCHC 5 cut(s) 214, 894, 926, 1126, 1273
SfaNI GCATC 1 cut(s) 1225
SfcI CTRYAG 1 cut(s) 478
Sfr274I CTCGAG 1 cut(s) 787
Sfr303I CCGCGG 2 cut(s) 256, 265
SfuI TTCGAA 1 cut(s) 1220
SgrBI CCGCGG 2 cut(s) 256, 265
SinI GGWCC 6 cut(s) 29, 38, 450, 1054, 1137, 1156
SlaI CTCGAG 1 cut(s) 787
SmiMI CAYNNNNRTG 2 cut(s) 767, 1129
SmlI CTYRAG 6 cut(s) 233, 505, 517, 529, 547, 787
SmoI CTYRAG 6 cut(s) 233, 505, 517, 529, 547, 787
Sse9I AATT 5 cut(s) 365, 758, 1300, 1466, 1882
SspMI CTAG 5 cut(s) 338, 410, 513, 537, 1208
SstI GAGCTC 1 cut(s) 894
StyD4I CCNGG 8 cut(s) 34, 206, 619, 804, 1050, 1244, 1849, 1923
StyI CCWWGG 2 cut(s) 1446, 1935
TaaI ACNGT 1 cut(s) 569
TaiI ACGT 3 cut(s) 575, 1193, 1404
TaqI TCGA 9 cut(s) 141, 577, 632, 788, 870, 933, 1220, 1298, 1983
TasI AATT 5 cut(s) 365, 758, 1300, 1466, 1882
TauI GCSGC 8 cut(s) 258, 267, 477, 613, 851, 914, 1265, 1282
TfiI GAWTC 3 cut(s) 394, 1747, 1807
Tru1I TTAA 4 cut(s) 627, 1085, 1197, 1469
Tru9I TTAA 4 cut(s) 627, 1085, 1197, 1469
TscAI CASTG 3 cut(s) 769, 1318, 1340
TseFI GTSAC 3 cut(s) 498, 1397, 1688
TseI GCWGC 8 cut(s) 5, 302, 607, 1030, 1276, 1372, 1410, 1522
Tsp45I GTSAC 3 cut(s) 498, 1397, 1688
TspDTI ATGAA 2 cut(s) 470, 1187
TspGWI ACGGA 7 cut(s) 72, 486, 585, 722, 1153, 1748, 1853
TspRI CASTG 3 cut(s) 769, 1318, 1340
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 6 cut(s) 29, 38, 450, 1054, 1137, 1156
XapI RAATTY 3 cut(s) 758, 1300, 1882
XbaI TCTAGA 1 cut(s) 409
XhoI CTCGAG 1 cut(s) 787
XmiI GTMKAC 2 cut(s) 1826, 1983
XmnI GAANNNNTTC 3 cut(s) 195, 986, 1895
XspI CTAG 5 cut(s) 338, 410, 513, 537, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.