Rorug06G0465900

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000255
Physical Location & Seq
Reverse (-)
59034796 .. 59036154
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0465900.1

Sequence Viewer

Length: 864 bp
ATGATGACGTGCCACGCAAGTTTTTCTCCAACCTTCCCTTGTCTATATATATATTTCCAATCAGCGTACACAACCAGACAGTCATCTCTAACATATACCCATCTACTCTTCCTTGAAACTGATATCATATCCAGAACCCCAACAATGCCATCTGTGCGCTCTAGCCCATTCTATAACATGGAAAACTCAGCCCTCTTTTCTTTGATCCGGCATACTACTACCACCAATTCCACAACCGAAAAGCGTTCATCAAAGTCTTCATCATCATCATCCGGAGGCCTCCTCAAGATGTTCAAACTCTTTCCCATGTTGACATCAGGTTGCAAAATGGTGGCTCTGTTGGGCAGACCCCGAAAGCCTCTACTCAAAGACCATGCCACAACAGGTACAATTTTTGGTTATCGCAAAGGCAGAGTGAGCCTGGCAATACAAGAAGACCCTCATTGCATGCCAATCTTTGTAATAGAGCTGCCAATGCACAGCAATGTTTTCCACAAGGAAATGGCATCGGATATAGTCCGAATCGCGCTGGAGAGCGAGACCAAGACGCACAAGAAGAAGTTGTTAGAGGAGTTTGTTTGGGCTGTGTATTGTAATGGGAGAAAAGTTGGGTATTCGATTAGGAGGAAGCAAATGTCAGAGGATGAGCTTCATGTTATGCAAACTTTGAGAGGGGTTTCAATGGGTGCGGGAGTACTTCCAAGTCCATCGGAGAAGGAATATGCAGCAGATGGGGAACTGACATATATAAGGGCAAGGTTTGATAGGGTGGTTGGATCAAAGGATTCTGAGTCTCTGTACATGATAAATCCAGATGGTGCAGTTGGCCCAGAATTGAGTATTTTCTTTGTAAGAGCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

287

Amino Acids

32.31

Weight (kDa)

9.3

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 128 - 285 1.4e-67 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 527
AccIII TCCGGA 1 cut(s) 272
AciI CCGC 1 cut(s) 689
AclWI GGATC 2 cut(s) 199, 784
AfaI GTAC 4 cut(s) 68, 388, 696, 800
AgsI TTSAA 3 cut(s) 116, 295, 681
AjiI CACGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 420
AluBI AGCT 3 cut(s) 469, 649, 857
AluI AGCT 3 cut(s) 469, 649, 857
Alw21I GWGCWC 1 cut(s) 859
Alw26I GTCTC 2 cut(s) 533, 798
AlwI GGATC 2 cut(s) 199, 784
Aor13HI TCCGGA 1 cut(s) 272
AoxI GGCC 2 cut(s) 277, 826
ApeKI GCWGC 2 cut(s) 469, 725
AspLEI GCGC 2 cut(s) 159, 529
AspS9I GGNCC 1 cut(s) 827
BanII GRGCYC 1 cut(s) 859
BbsI GAAGAC 2 cut(s) 249, 441
Bbv12I GWGCWC 1 cut(s) 859
BbvI GCAGC 2 cut(s) 456, 737
BccI CCATC 5 cut(s) 108, 157, 715, 725, 809
BciT130I CCWGG 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 533, 798
BfaI CTAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 470, 726
BlsI GCNGC 2 cut(s) 471, 727
BmcAI AGTACT 1 cut(s) 696
Bme1390I CCNGG 1 cut(s) 422
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 1 cut(s) 827
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 515
BpiI GAAGAC 2 cut(s) 249, 441
BplI GAGNNNNNCTC 2 cut(s) 267, 299
BpmI CTGGAG 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 533
BsaWI WCCGGW 1 cut(s) 272
Bse3DI GCAATG 2 cut(s) 442, 490
BseAI TCCGGA 1 cut(s) 272
BseBI CCWGG 1 cut(s) 422
BseGI GGATG 2 cut(s) 269, 649
BseMI GCAATG 2 cut(s) 442, 490
BseMII CTCAG 2 cut(s) 201, 780
BseRI GAGGAG 2 cut(s) 272, 584
BseXI GCAGC 2 cut(s) 456, 737
BsgI GTGCAG 1 cut(s) 840
Bsh1236I CGCG 1 cut(s) 527
BshFI GGCC 2 cut(s) 279, 828
BsiHKAI GWGCWC 1 cut(s) 859
BsiSI CCGG 2 cut(s) 208, 273
BsmAI GTCTC 2 cut(s) 533, 798
BsnI GGCC 2 cut(s) 279, 828
Bso31I GGTCTC 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 859
Bsp13I TCCGGA 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 2 cut(s) 204, 776
BspACI CCGC 1 cut(s) 689
BspANI GGCC 2 cut(s) 279, 828
BspCNI CTCAG 2 cut(s) 200, 781
BspEI TCCGGA 1 cut(s) 272
BspFNI CGCG 1 cut(s) 527
BspPI GGATC 2 cut(s) 199, 784
BspTNI GGTCTC 1 cut(s) 533
BsrDI GCAATG 2 cut(s) 442, 490
BsrGI TGTACA 1 cut(s) 798
BssMI GATC 2 cut(s) 204, 776
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 1 cut(s) 81
Bst6I CTCTTC 1 cut(s) 113
BstAUI TGTACA 1 cut(s) 798
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 2 cut(s) 187, 789
BstF5I GGATG 2 cut(s) 269, 649
BstFNI CGCG 1 cut(s) 527
BstHHI GCGC 2 cut(s) 159, 529
BstKTI GATC 2 cut(s) 207, 779
BstMAI GTCTC 2 cut(s) 533, 798
BstMBI GATC 2 cut(s) 204, 776
BstMWI GCNNNNNNNGC 3 cut(s) 154, 417, 475
BstNI CCWGG 1 cut(s) 422
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 420
BstUI CGCG 1 cut(s) 527
BstV1I GCAGC 2 cut(s) 456, 737
BstV2I GAAGAC 2 cut(s) 249, 441
BsuRI GGCC 2 cut(s) 279, 828
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 2 cut(s) 269, 649
Cac8I GCNNGC 1 cut(s) 449
CfoI GCGC 2 cut(s) 159, 529
Cfr13I GGNCC 1 cut(s) 827
CseI GACGC 1 cut(s) 556
Csp6I GTAC 4 cut(s) 67, 387, 695, 799
CviAII CATG 6 cut(s) 178, 307, 374, 448, 653, 802
CviQI GTAC 4 cut(s) 67, 387, 695, 799
DdeI CTNAG 2 cut(s) 187, 789
DpnI GATC 2 cut(s) 206, 778
DpnII GATC 2 cut(s) 204, 776
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Ecl136II GAGCTC 1 cut(s) 857
Eco147I AGGCCT 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 859
Eco31I GGTCTC 1 cut(s) 533
Eco32I GATATC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 857
EcoICRI GAGCTC 1 cut(s) 857
EcoRII CCWGG 1 cut(s) 420
EcoRV GATATC 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 859
FaeI CATG 6 cut(s) 181, 310, 377, 451, 656, 805
FatI CATG 6 cut(s) 177, 306, 373, 447, 652, 801
FauI CCCGC 1 cut(s) 682
Fnu4HI GCNGC 2 cut(s) 470, 726
FokI GGATG 2 cut(s) 256, 656
FriOI GRGCYC 1 cut(s) 859
Fsp4HI GCNGC 2 cut(s) 470, 726
FspBI CTAG 1 cut(s) 162
GlaI GCGC 2 cut(s) 158, 528
GluI GCNGC 2 cut(s) 470, 726
GsuI CTGGAG 1 cut(s) 551
HaeIII GGCC 2 cut(s) 279, 828
HapII CCGG 2 cut(s) 208, 273
HgaI GACGC 1 cut(s) 556
HhaI GCGC 2 cut(s) 159, 529
Hin1II CATG 6 cut(s) 181, 310, 377, 451, 656, 805
Hin6I GCGC 2 cut(s) 157, 527
HinP1I GCGC 2 cut(s) 157, 527
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HinfI GANTC 3 cut(s) 522, 785, 791
HpaII CCGG 2 cut(s) 208, 273
Hpy166II GTNNAC 2 cut(s) 69, 312
Hpy188I TCNGA 5 cut(s) 511, 521, 640, 712, 790
Hpy188III TCNNGA 4 cut(s) 132, 273, 286, 812
Hpy8I GTNNAC 2 cut(s) 69, 312
HpyAV CCTTC 2 cut(s) 43, 709
HpyCH4III ACNGT 1 cut(s) 81
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 6 cut(s) 324, 447, 478, 661, 725, 821
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 417, 475
HpyF3I CTNAG 2 cut(s) 187, 789
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 6 cut(s) 181, 310, 377, 451, 656, 805
HspAI GCGC 2 cut(s) 157, 527
Kpn2I TCCGGA 1 cut(s) 272
Kzo9I GATC 2 cut(s) 204, 776
Lsp1109I GCAGC 2 cut(s) 456, 737
LweI GCATC 1 cut(s) 515
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 8
MalI GATC 2 cut(s) 206, 778
MboI GATC 2 cut(s) 204, 776
MboII GAAGA 4 cut(s) 100, 249, 446, 568
MhlI GDGCHC 1 cut(s) 859
MluCI AATT 3 cut(s) 226, 390, 833
MlyI GAGTC 1 cut(s) 800
MmeI TCCRAC 2 cut(s) 53, 754
MroI TCCGGA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 483
MspI CCGG 2 cut(s) 208, 273
MspR9I CCNGG 1 cut(s) 422
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 1 cut(s) 527
MwoI GCNNNNNNNGC 3 cut(s) 154, 417, 475
NdeII GATC 2 cut(s) 204, 776
NlaIII CATG 6 cut(s) 181, 310, 377, 451, 656, 805
NspI RCATGY 1 cut(s) 451
PaeI GCATGC 1 cut(s) 451
PceI AGGCCT 1 cut(s) 279
PfeI GAWTC 2 cut(s) 522, 785
PkrI GCNGC 2 cut(s) 471, 727
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
Psp124BI GAGCTC 1 cut(s) 859
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspPI GGNCC 1 cut(s) 827
RsaI GTAC 4 cut(s) 68, 388, 696, 800
RsaNI GTAC 4 cut(s) 67, 387, 695, 799
RseI CAYNNNNRTG 1 cut(s) 483
SacI GAGCTC 1 cut(s) 859
SatI GCNGC 2 cut(s) 470, 726
Sau3AI GATC 2 cut(s) 204, 776
Sau96I GGNCC 1 cut(s) 827
ScaI AGTACT 1 cut(s) 696
SchI GAGTC 1 cut(s) 800
ScrFI CCNGG 1 cut(s) 422
SduI GDGCHC 1 cut(s) 859
SetI ASST 8 cut(s) 11, 35, 322, 388, 471, 651, 761, 859
SfaNI GCATC 1 cut(s) 515
SmiMI CAYNNNNRTG 1 cut(s) 483
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
SphI GCATGC 1 cut(s) 451
Sse9I AATT 3 cut(s) 226, 390, 833
SseBI AGGCCT 1 cut(s) 279
SsiI CCGC 1 cut(s) 689
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 859
StuI AGGCCT 1 cut(s) 279
StyD4I CCNGG 1 cut(s) 420
TaaI ACNGT 1 cut(s) 81
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 617
TasI AATT 3 cut(s) 226, 390, 833
TatI WGTACW 2 cut(s) 694, 798
TfiI GAWTC 2 cut(s) 522, 785
TseI GCWGC 2 cut(s) 469, 725
TspDTI ATGAA 3 cut(s) 237, 249, 641
XceI RCATGY 1 cut(s) 451
XspI CTAG 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.