RLG00000013701

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000255
Physical Location & Seq
Reverse (-)
36139427 .. 36141795
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013701

Sequence Viewer

Length: 468 bp
ATGGTCGCCGATTTTAACAACCTCATCAAGTCAACCCCGAAACCCCCGATGGGCTTCACCGAGAAAAACTCCGCCACATTACACTCCTCCGGCAACCCTTGCCTCGATCTCTTCTTCCATGTCATACCTAACACTCCAGCATTCTATGTCCACCAGCAGCTCCCTCTCGATTGGGCCCACGACGCCCTAACCACCGTGAAGCTCATCTGTCCACAAGCACCACCCCAAAACACCGCGGCGGTCTGGCTCCACAAGCACCACCCCAAAACCCTAGCCTGCAACATTGACCTTGGAGGTGTAGTTGTTGTAGACGGTGAGGTTCTGGGCCGATGGCAGCGAGCAAAGTTAGCTCTGTCATTTCGCAGCCATTTTACATGCCCAGACATCGATTCCAGCTTGTTCAACGACTTGACCCCAGAAAACTCCGGTGCCCAGACCGTAACCTTCTTTGCCGATTCCACCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

156

Amino Acids

17.07

Weight (kDa)

6.2

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 20 - 96 3.2e-16 Domain of unknown function (DUF2828)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 428
AccI GTMKAC 1 cut(s) 309
AccII CGCG 1 cut(s) 236
AciI CCGC 4 cut(s) 72, 234, 236, 239
AcyI GRCGYC 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 403
AluBI AGCT 4 cut(s) 160, 202, 350, 396
AluI AGCT 4 cut(s) 160, 202, 350, 396
AoxI GGCC 2 cut(s) 174, 325
ApaI GGGCCC 1 cut(s) 178
ApeKI GCWGC 3 cut(s) 157, 334, 363
AspS9I GGNCC 3 cut(s) 174, 175, 325
AsuHPI GGTGA 2 cut(s) 49, 326
BaeGI GKGCMC 2 cut(s) 178, 433
BanI GGYRCC 1 cut(s) 428
BanII GRGCYC 1 cut(s) 178
BbvI GCAGC 3 cut(s) 169, 346, 375
BccI CCATC 2 cut(s) 43, 324
BfaI CTAG 2 cut(s) 272, 466
BisI GCNGC 4 cut(s) 158, 237, 335, 364
BlsI GCNGC 4 cut(s) 159, 238, 336, 365
BmgT120I GGNCC 3 cut(s) 174, 175, 325
BmiI GGNNCC 3 cut(s) 176, 248, 430
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 234, 289
BsaWI WCCGGW 1 cut(s) 425
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 50
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 2 cut(s) 234, 289
BseLI CCNNNNNNNGG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 76
BseSI GKGCMC 2 cut(s) 178, 433
BseXI GCAGC 3 cut(s) 169, 346, 375
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 2 cut(s) 176, 327
BshNI GGYRCC 1 cut(s) 428
BshVI ATCGAT 1 cut(s) 387
BsiSI CCGG 2 cut(s) 90, 426
BslI CCNNNNNNNGG 1 cut(s) 50
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 2 cut(s) 176, 327
Bsp120I GGGCCC 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 178, 433
Bsp143I GATC 1 cut(s) 106
BspACI CCGC 4 cut(s) 72, 234, 236, 239
BspANI GGCC 2 cut(s) 176, 327
BspDI ATCGAT 1 cut(s) 387
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 3 cut(s) 176, 248, 430
BspT107I GGYRCC 1 cut(s) 428
BssECI CCNNGG 2 cut(s) 234, 289
BssMI GATC 1 cut(s) 106
BssNI GRCGYC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 289
Bst4CI ACNGT 3 cut(s) 196, 314, 439
Bst6I CTCTTC 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 99
BstC8I GCNNGC 2 cut(s) 277, 339
BstDSI CCRYGG 1 cut(s) 234
BstFNI CGCG 1 cut(s) 236
BstKTI GATC 1 cut(s) 109
BstMBI GATC 1 cut(s) 106
BstMWI GCNNNNNNNGC 4 cut(s) 99, 182, 253, 347
BstNSI RCATGY 1 cut(s) 378
BstSLI GKGCMC 2 cut(s) 178, 433
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 3 cut(s) 169, 346, 375
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 2 cut(s) 176, 327
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 234
Cac8I GCNNGC 2 cut(s) 277, 339
Cfr13I GGNCC 3 cut(s) 174, 175, 325
Cfr42I CCGCGG 1 cut(s) 237
ClaI ATCGAT 1 cut(s) 387
CseI GACGC 1 cut(s) 191
CviAII CATG 2 cut(s) 119, 375
DpnI GATC 1 cut(s) 108
DpnII GATC 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 1 cut(s) 178
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 122, 378
FaiI YATR 4 cut(s) 120, 125, 147, 376
FatI CATG 2 cut(s) 118, 374
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 4 cut(s) 158, 237, 335, 364
FriOI GRGCYC 1 cut(s) 178
Fsp4HI GCNGC 4 cut(s) 158, 237, 335, 364
FspBI CTAG 2 cut(s) 272, 466
GluI GCNGC 4 cut(s) 158, 237, 335, 364
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 2 cut(s) 176, 327
HapII CCGG 2 cut(s) 90, 426
HgaI GACGC 1 cut(s) 191
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 2 cut(s) 122, 378
HincII GTYRAC 1 cut(s) 33
HindII GTYRAC 1 cut(s) 33
HinfI GANTC 2 cut(s) 389, 455
HpaII CCGG 2 cut(s) 90, 426
HphI GGTGA 2 cut(s) 49, 326
Hpy166II GTNNAC 4 cut(s) 33, 151, 212, 310
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 4 cut(s) 33, 151, 212, 310
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 3 cut(s) 196, 314, 439
HpyCH4V TGCA 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 4 cut(s) 99, 182, 253, 347
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 2 cut(s) 122, 378
KspI CCGCGG 1 cut(s) 237
Kzo9I GATC 1 cut(s) 106
LmnI GCTCC 2 cut(s) 165, 252
Lsp1109I GCAGC 3 cut(s) 169, 346, 375
MaeI CTAG 2 cut(s) 272, 466
MaeIII GTNAC 1 cut(s) 439
MalI GATC 1 cut(s) 108
MboI GATC 1 cut(s) 106
MboII GAAGA 2 cut(s) 103, 106
MhlI GDGCHC 2 cut(s) 178, 433
MnlI CCTC 6 cut(s) 32, 97, 113, 174, 287, 310
MseI TTAA 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 2 cut(s) 90, 426
Mva1269I GAATGC 1 cut(s) 140
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 4 cut(s) 99, 182, 253, 347
NdeII GATC 1 cut(s) 106
NlaIII CATG 2 cut(s) 122, 378
NlaIV GGNNCC 3 cut(s) 176, 248, 430
NspI RCATGY 1 cut(s) 378
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 389, 455
PkrI GCNGC 4 cut(s) 159, 238, 336, 365
PspN4I GGNNCC 3 cut(s) 176, 248, 430
PspOMI GGGCCC 1 cut(s) 174
PspPI GGNCC 3 cut(s) 174, 175, 325
SacII CCGCGG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 4 cut(s) 158, 237, 335, 364
Sau3AI GATC 1 cut(s) 106
Sau96I GGNCC 3 cut(s) 174, 175, 325
SduI GDGCHC 2 cut(s) 178, 433
Sfr303I CCGCGG 1 cut(s) 237
SgrBI CCGCGG 1 cut(s) 237
SsiI CCGC 4 cut(s) 72, 234, 236, 239
SspMI CTAG 2 cut(s) 272, 466
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 196, 314, 439
TaqI TCGA 3 cut(s) 105, 168, 387
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 2 cut(s) 389, 455
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseI GCWGC 3 cut(s) 157, 334, 363
XceI RCATGY 1 cut(s) 378
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 2 cut(s) 272, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.