FvH4_5g20030

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000255
Physical Location & Seq
Reverse (-)
11817504 .. 11819113
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g20030.t1

Sequence Viewer

Length: 1455 bp
ATGTTGCTTGCGCTAGAAGTTACTCTCCTATTCGGCGGCCAAGAGGAGTCACATTCTAGGTCAAGATCAAAAACAGCATCTAGGCGAGCGTTTAAGTCGAGAACCAACAAAGGGAAGAGGATGAGGTATAGCAGCCGGCAGGAGCCTAGGGAGGAGAGAGTGGTGAAAGCGACGGAGAAGGCAAAGTCGGAAAAGGAAAAGGCGAGCGTCTTGAGAAAACAAAAGTTCGCCGACATGGCAAACAAGGCCATCTCGAGATACGAGCGTGACCCGGACTACCGGTTCCTGCATGAAAAGGTTTCCGATCTCTTTGCAACTTGCTTGAAATCCGACCTCGAAAGTCTCAAGTCTAATGAGCGCAAAAACATCAGCCTCGCCGCCAAGTGGTGCCCTTCGCTCGACTCGTCTTTCGACCGCGCCACTCTCCTCTGTGAAACGATTGCAAAGAAGGTTTTCCCGCGGGAGTTGTTTCACGAGTACGACGGCGTTTTGGAGGAGCATTACAGGTACAGAGTGAGGGACCGGCTGAGGAAGGAAGTGCTGGTTCCGTTGAGGAAGGCTCTGGAGTTACCAGAGGTTTATATGGGGGCACAAAAATGGAGGTCCCTTCCTTACAATAGGGTCCCCTCTGTGGCCATGAAGCTTTACAAGGATACGTTTTTTAAGTACGACATTGTGAGGTTTTCGAAGTACTTGGTTGATGCAAAGGCAGGGAAGACCACCATTGCGGCCGGGGCGCTGCTGCCGCATGAGATCATTGCCTCAAATGCAAATGGCAGTGACGGCGTGGCGGAGCTTCAGTGGAAGAGGCTGGTGGAGGATATGGTGAAGAAGGGCAAGATGAAGAACTGCTTGGCTGTGTGTGACGTGTCAGGGAGCATGGGAGGGCTTCCTATGGATGTGAGTGTGGCTTTGGGGCTTTTGGTTTCTGAACTGAGCGAGAAACCGTGGAAAGGGAAGGTTATCACGTTTAGTGAGAAGCCAGAGCTGCATTTTATCAAAGGGGAAGATTTGGGGTCGAAGTGTAAGTTTATGAGGGATATGAAGGCGGGGTTCAATACCGATTTTCAGAAGGTGTTTGATTTGATACTTAGAGTAGCTGTGAAGGGGAACTTGAAACCGGATGAGATGATAAAGAGGGTGTTTGTGTTTAGTGACATGGAGTTCGATGAGGCTAATCCGGAGAGTACGTGGGAGACGGATTATGAGGCGATTCAGAGGAAGTTCAAGAGGAAGGGCTATGGGGATGTGGTGCCTCAGATTGTTTTTTGGAATCTGAGGCACTCAGAGTCTACTCCGGTAACGGAGAAGCAACCTGGGGTGGCCATGTTGAGTGGCTTTTCAAAGAATTTGTTGAAGTTGTTCTTGAATAATGATGGGGAAGTTAACCCCAACATGGCCATGGAGTTGGCCATCTCTGGCGATGAGTATCAGAAGCTAGCTGTGGTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

485

Amino Acids

55.33

Weight (kDa)

9.34

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 27 - 281 7.4e-86 Domain of unknown function (DUF2828)
DUF7788 PF25043 283 - 464 1.7e-79 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 387, 1252
AccI GTMKAC 1 cut(s) 1292
AccII CGCG 2 cut(s) 417, 460
AccIII TCCGGA 1 cut(s) 1180
AciI CCGC 9 cut(s) 36, 378, 415, 458, 460, 728, 746, 791, 1049
AcoI YGGCCR 6 cut(s) 37, 633, 729, 1323, 1398, 1410
AcsI RAATTY 1 cut(s) 1348
AcuI CTGAAG 1 cut(s) 782
AfaI GTAC 5 cut(s) 479, 509, 668, 692, 1189
AfiI CCNNNNNNNGG 5 cut(s) 111, 384, 631, 953, 1396
AflIII ACRYGT 1 cut(s) 867
AgeI ACCGGT 1 cut(s) 279
AgsI TTSAA 7 cut(s) 325, 1057, 1117, 1228, 1344, 1357, 1369
AjiI CACGTC 1 cut(s) 868
AjnI CCWGG 1 cut(s) 1315
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
AloI GAACNNNNNNTCC 2 cut(s) 266, 298
AluBI AGCT 6 cut(s) 643, 796, 988, 1100, 1438, 1442
AluI AGCT 6 cut(s) 643, 796, 988, 1100, 1438, 1442
Alw26I GTCTC 2 cut(s) 347, 1190
Ama87I CYCGRG 1 cut(s) 253
Aor13HI TCCGGA 1 cut(s) 1180
AoxI GGCC 7 cut(s) 37, 246, 633, 729, 1323, 1398, 1410
ApeKI GCWGC 4 cut(s) 132, 739, 742, 988
ApoI RAATTY 1 cut(s) 1348
ArsI GACNNNNNNTTYG 4 cut(s) 392, 424, 1148, 1180
AsiGI ACCGGT 1 cut(s) 279
Asp700I GAANNNNTTC 2 cut(s) 452, 1361
AspA2I CCTAGG 1 cut(s) 146
AspLEI GCGC 4 cut(s) 13, 360, 419, 739
AspS9I GGNCC 3 cut(s) 520, 603, 622
AsuC2I CCSGG 2 cut(s) 272, 733
AsuHPI GGTGA 2 cut(s) 175, 838
AsuII TTCGAA 1 cut(s) 686
AsuNHI GCTAGC 1 cut(s) 1438
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 3 cut(s) 520, 603, 622
AvrII CCTAGG 1 cut(s) 146
BaeGI GKGCMC 2 cut(s) 392, 592
BaeI ACNNNNGTAYC 2 cut(s) 250, 283
BalI TGGCCA 4 cut(s) 635, 1325, 1400, 1412
BanI GGYRCC 2 cut(s) 387, 1252
BauI CACGAG 1 cut(s) 473
BbsI GAAGAC 1 cut(s) 722
BbvCI CCTCAGC 1 cut(s) 527
BbvI GCAGC 4 cut(s) 144, 726, 729, 975
BccI CCATC 3 cut(s) 257, 1370, 1421
BceAI ACGGC 2 cut(s) 499, 799
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BciT130I CCWGG 1 cut(s) 1317
BciVI GTATCC 1 cut(s) 646
BcnI CCSGG 2 cut(s) 272, 733
BcoDI GTCTC 2 cut(s) 347, 1190
BfaI CTAG 5 cut(s) 14, 57, 81, 147, 1439
BfoI RGCGCY 1 cut(s) 740
BfuI GTATCC 1 cut(s) 646
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 8 cut(s) 37, 133, 378, 729, 740, 743, 746, 989
BlnI CCTAGG 1 cut(s) 146
BlsI GCNGC 8 cut(s) 38, 134, 379, 730, 741, 744, 747, 990
BmcAI AGTACT 1 cut(s) 692
Bme1390I CCNGG 3 cut(s) 272, 733, 1317
Bme18I GGWCC 3 cut(s) 520, 603, 622
BmeT110I CYCGRG 1 cut(s) 253
BmgBI CACGTC 1 cut(s) 868
BmgT120I GGNCC 3 cut(s) 520, 603, 622
BmiI GGNNCC 9 cut(s) 144, 284, 389, 521, 546, 605, 623, 624, 1254
BmrFI CCNGG 3 cut(s) 272, 733, 1317
BmsI GCATC 2 cut(s) 86, 691
BmtI GCTAGC 1 cut(s) 1442
BpiI GAAGAC 1 cut(s) 722
BplI GAGNNNNNCTC 2 cut(s) 544, 576
BpmI CTGGAG 1 cut(s) 584
Bpu10I CCTNAGC 1 cut(s) 527
Bpu14I TTCGAA 1 cut(s) 686
BpuEI CTTGAG 2 cut(s) 232, 329
BpuMI CCSGG 2 cut(s) 272, 733
BsaAI YACGTR 1 cut(s) 1191
BsaBI GATNNNNATC 1 cut(s) 1428
BsaJI CCNNGG 6 cut(s) 146, 458, 732, 947, 1316, 1401
BsaWI WCCGGW 4 cut(s) 279, 1120, 1180, 1297
BsaXI ACNNNNNCTCC 4 cut(s) 785, 815, 1175, 1205
Bsc4I CCNNNNNNNGG 5 cut(s) 111, 384, 631, 953, 1396
Bse118I RCCGGY 3 cut(s) 135, 279, 522
Bse3DI GCAATG 2 cut(s) 723, 756
Bse8I GATNNNNATC 1 cut(s) 1428
BseAI TCCGGA 1 cut(s) 1180
BseBI CCWGG 1 cut(s) 1317
BseDI CCNNGG 6 cut(s) 146, 458, 732, 947, 1316, 1401
BseGI GGATG 4 cut(s) 126, 904, 1129, 1252
BseJI GATNNNNATC 1 cut(s) 1428
BseLI CCNNNNNNNGG 5 cut(s) 111, 384, 631, 953, 1396
BseMI GCAATG 2 cut(s) 723, 756
BseMII CTCAG 5 cut(s) 518, 926, 1268, 1271, 1299
BseRI GAGGAG 4 cut(s) 59, 167, 416, 509
BseSI GKGCMC 2 cut(s) 392, 592
BseX3I CGGCCG 1 cut(s) 729
BseXI GCAGC 4 cut(s) 144, 726, 729, 975
Bsh1236I CGCG 2 cut(s) 417, 460
Bsh1285I CGRYCG 2 cut(s) 415, 732
BshFI GGCC 7 cut(s) 39, 248, 635, 731, 1325, 1400, 1412
BshNI GGYRCC 2 cut(s) 387, 1252
BshTI ACCGGT 1 cut(s) 279
BsiEI CGRYCG 2 cut(s) 415, 732
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 8 cut(s) 136, 272, 280, 523, 732, 1121, 1181, 1298
BslFI GGGAC 3 cut(s) 533, 589, 608
BslI CCNNNNNNNGG 5 cut(s) 111, 384, 631, 953, 1396
BsmAI GTCTC 2 cut(s) 347, 1190
BsmBI CGTCTC 1 cut(s) 1190
BsmFI GGGAC 3 cut(s) 533, 589, 608
BsnI GGCC 7 cut(s) 39, 248, 635, 731, 1325, 1400, 1412
BsoBI CYCGRG 1 cut(s) 253
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 2 cut(s) 392, 592
Bsp13I TCCGGA 1 cut(s) 1180
Bsp143I GATC 3 cut(s) 65, 304, 753
Bsp19I CCATGG 1 cut(s) 1401
BspACI CCGC 9 cut(s) 36, 378, 415, 458, 460, 728, 746, 791, 1049
BspANI GGCC 7 cut(s) 39, 248, 635, 731, 1325, 1400, 1412
BspCNI CTCAG 5 cut(s) 519, 927, 1269, 1270, 1298
BspEI TCCGGA 1 cut(s) 1180
BspFNI CGCG 2 cut(s) 417, 460
BspLI GGNNCC 9 cut(s) 144, 284, 389, 521, 546, 605, 623, 624, 1254
BspOI GCTAGC 1 cut(s) 1442
BspT104I TTCGAA 1 cut(s) 686
BspT107I GGYRCC 2 cut(s) 387, 1252
BsrDI GCAATG 2 cut(s) 723, 756
BsrFI RCCGGY 3 cut(s) 135, 279, 522
BssAI RCCGGY 3 cut(s) 135, 279, 522
BssECI CCNNGG 6 cut(s) 146, 458, 732, 947, 1316, 1401
BssMI GATC 3 cut(s) 65, 304, 753
BssSI CACGAG 1 cut(s) 473
BssT1I CCWWGG 2 cut(s) 146, 1401
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 1 cut(s) 1317
Bst4CI ACNGT 1 cut(s) 948
Bst6I CTCTTC 2 cut(s) 110, 800
BstBAI YACGTR 1 cut(s) 1191
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 5 cut(s) 9, 87, 137, 205, 1440
BstDEI CTNAG 6 cut(s) 527, 935, 1091, 1257, 1277, 1285
BstDSI CCRYGG 3 cut(s) 458, 947, 1401
BstF5I GGATG 4 cut(s) 126, 904, 1129, 1252
BstFNI CGCG 2 cut(s) 417, 460
BstH2I RGCGCY 1 cut(s) 740
BstHHI GCGC 4 cut(s) 13, 360, 419, 739
BstKTI GATC 3 cut(s) 68, 307, 756
BstMAI GTCTC 2 cut(s) 347, 1190
BstMBI GATC 3 cut(s) 65, 304, 753
BstMCI CGRYCG 2 cut(s) 415, 732
BstMWI GCNNNNNNNGC 7 cut(s) 236, 245, 734, 745, 767, 783, 988
BstNI CCWGG 1 cut(s) 1317
BstSCI CCNGG 3 cut(s) 270, 731, 1315
BstSLI GKGCMC 2 cut(s) 392, 592
BstUI CGCG 2 cut(s) 417, 460
BstV1I GCAGC 4 cut(s) 144, 726, 729, 975
BstV2I GAAGAC 1 cut(s) 722
BstXI CCANNNNNNTGG 1 cut(s) 1408
BstZI CGGCCG 1 cut(s) 729
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 7 cut(s) 39, 248, 635, 731, 1325, 1400, 1412
BtgI CCRYGG 3 cut(s) 458, 947, 1401
BtgZI GCGATG 1 cut(s) 1437
BtrI CACGTC 1 cut(s) 868
BtsCI GGATG 4 cut(s) 126, 904, 1129, 1252
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 2 cut(s) 784, 806
Cac8I GCNNGC 5 cut(s) 9, 87, 137, 205, 1440
CfoI GCGC 4 cut(s) 13, 360, 419, 739
Cfr10I RCCGGY 3 cut(s) 135, 279, 522
Cfr13I GGNCC 3 cut(s) 520, 603, 622
Cfr42I CCGCGG 1 cut(s) 461
CseI GACGC 1 cut(s) 196
Csp6I GTAC 5 cut(s) 478, 508, 667, 691, 1188
CspAI ACCGGT 1 cut(s) 279
CviAII CATG 9 cut(s) 235, 290, 637, 749, 880, 1159, 1327, 1396, 1402
CviQI GTAC 5 cut(s) 478, 508, 667, 691, 1188
DdeI CTNAG 6 cut(s) 527, 935, 1091, 1257, 1277, 1285
DpnI GATC 3 cut(s) 67, 306, 755
DpnII GATC 3 cut(s) 65, 304, 753
EaeI YGGCCR 6 cut(s) 37, 633, 729, 1323, 1398, 1410
EagI CGGCCG 1 cut(s) 729
Eam1104I CTCTTC 2 cut(s) 110, 800
EarI CTCTTC 2 cut(s) 110, 800
EciI GGCGGA 1 cut(s) 806
EclXI CGGCCG 1 cut(s) 729
Eco130I CCWWGG 2 cut(s) 146, 1401
Eco47I GGWCC 3 cut(s) 520, 603, 622
Eco52I CGGCCG 1 cut(s) 729
Eco57I CTGAAG 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 253
EcoO109I RGGNCCY 2 cut(s) 603, 622
EcoRII CCWGG 1 cut(s) 1315
EcoT14I CCWWGG 2 cut(s) 146, 1401
ErhI CCWWGG 2 cut(s) 146, 1401
Esp3I CGTCTC 1 cut(s) 1190
FaeI CATG 9 cut(s) 238, 293, 640, 752, 883, 1162, 1330, 1399, 1405
FalI AAGNNNNNCTT 6 cut(s) 836, 868, 1097, 1129, 1349, 1381
FaqI GGGAC 3 cut(s) 533, 589, 608
FatI CATG 9 cut(s) 234, 289, 636, 748, 879, 1158, 1326, 1395, 1401
FauI CCCGC 3 cut(s) 453, 465, 1042
FblI GTMKAC 1 cut(s) 1292
Fnu4HI GCNGC 8 cut(s) 37, 133, 378, 729, 740, 743, 746, 989
FokI GGATG 4 cut(s) 133, 911, 1136, 1259
Fsp4HI GCNGC 8 cut(s) 37, 133, 378, 729, 740, 743, 746, 989
FspBI CTAG 5 cut(s) 14, 57, 81, 147, 1439
GlaI GCGC 4 cut(s) 12, 359, 418, 738
GluI GCNGC 8 cut(s) 37, 133, 378, 729, 740, 743, 746, 989
GsuI CTGGAG 1 cut(s) 584
HaeII RGCGCY 1 cut(s) 740
HaeIII GGCC 7 cut(s) 39, 248, 635, 731, 1325, 1400, 1412
HapII CCGG 8 cut(s) 136, 272, 280, 523, 732, 1121, 1181, 1298
HgaI GACGC 1 cut(s) 196
HhaI GCGC 4 cut(s) 13, 360, 419, 739
Hin1II CATG 9 cut(s) 238, 293, 640, 752, 883, 1162, 1330, 1399, 1405
Hin6I GCGC 4 cut(s) 11, 358, 417, 737
HinP1I GCGC 4 cut(s) 11, 358, 417, 737
HincII GTYRAC 1 cut(s) 1387
HindII GTYRAC 1 cut(s) 1387
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 5 cut(s) 47, 401, 1213, 1273, 1289
HpaI GTTAAC 1 cut(s) 1387
HpaII CCGG 8 cut(s) 136, 272, 280, 523, 732, 1121, 1181, 1298
HphI GGTGA 2 cut(s) 175, 838
Hpy166II GTNNAC 3 cut(s) 1293, 1387, 1450
Hpy8I GTNNAC 3 cut(s) 1293, 1387, 1450
Hpy99I CGWCG 2 cut(s) 175, 485
HpyCH4III ACNGT 1 cut(s) 948
HpyCH4IV ACGT 4 cut(s) 656, 867, 968, 1190
HpyCH4V TGCA 6 cut(s) 289, 314, 443, 704, 770, 991
HpyF10VI GCNNNNNNNGC 7 cut(s) 236, 245, 734, 745, 767, 783, 988
HpyF3I CTNAG 6 cut(s) 527, 935, 1091, 1257, 1277, 1285
HpySE526I ACGT 4 cut(s) 656, 867, 968, 1190
Hsp92II CATG 9 cut(s) 238, 293, 640, 752, 883, 1162, 1330, 1399, 1405
HspAI GCGC 4 cut(s) 11, 358, 417, 737
KflI GGGWCCC 1 cut(s) 622
Kpn2I TCCGGA 1 cut(s) 1180
KroI GCCGGC 1 cut(s) 135
KroNI GCCGGC 1 cut(s) 137
KspAI GTTAAC 1 cut(s) 1387
KspI CCGCGG 1 cut(s) 461
Kzo9I GATC 3 cut(s) 65, 304, 753
LmnI GCTCC 4 cut(s) 142, 496, 793, 876
Lsp1109I GCAGC 4 cut(s) 144, 726, 729, 975
LweI GCATC 2 cut(s) 86, 691
MaeI CTAG 5 cut(s) 14, 57, 81, 147, 1439
MaeII ACGT 4 cut(s) 656, 867, 968, 1190
MaeIII GTNAC 8 cut(s) 19, 48, 266, 567, 779, 863, 1154, 1300
MalI GATC 3 cut(s) 67, 306, 755
MboI GATC 3 cut(s) 65, 304, 753
MboII GAAGA 6 cut(s) 127, 727, 817, 841, 856, 1019
MhlI GDGCHC 2 cut(s) 392, 592
MlsI TGGCCA 4 cut(s) 635, 1325, 1400, 1412
MluCI AATT 1 cut(s) 1348
MluNI TGGCCA 4 cut(s) 635, 1325, 1400, 1412
MlyI GAGTC 3 cut(s) 56, 395, 1298
MmeI TCCRAC 2 cut(s) 168, 354
Mox20I TGGCCA 4 cut(s) 635, 1325, 1400, 1412
MroI TCCGGA 1 cut(s) 1180
MroNI GCCGGC 1 cut(s) 135
MroXI GAANNNNTTC 2 cut(s) 452, 1361
MscI TGGCCA 4 cut(s) 635, 1325, 1400, 1412
MseI TTAA 3 cut(s) 93, 663, 1386
MslI CAYNNNNRTG 2 cut(s) 595, 1400
Msp20I TGGCCA 4 cut(s) 635, 1325, 1400, 1412
MspA1I CMGCKG 1 cut(s) 460
MspI CCGG 8 cut(s) 136, 272, 280, 523, 732, 1121, 1181, 1298
MspR9I CCNGG 3 cut(s) 272, 733, 1317
MvaI CCWGG 1 cut(s) 1317
MvnI CGCG 2 cut(s) 417, 460
MwoI GCNNNNNNNGC 7 cut(s) 236, 245, 734, 745, 767, 783, 988
NaeI GCCGGC 1 cut(s) 137
NciI CCSGG 2 cut(s) 272, 733
NcoI CCATGG 1 cut(s) 1401
NdeII GATC 3 cut(s) 65, 304, 753
NgoMIV GCCGGC 1 cut(s) 135
NheI GCTAGC 1 cut(s) 1438
NlaIII CATG 9 cut(s) 238, 293, 640, 752, 883, 1162, 1330, 1399, 1405
NlaIV GGNNCC 9 cut(s) 144, 284, 389, 521, 546, 605, 623, 624, 1254
NmuCI GTSAC 5 cut(s) 48, 266, 779, 863, 1154
NspV TTCGAA 1 cut(s) 686
PaeR7I CTCGAG 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 401
PdiI GCCGGC 1 cut(s) 137
PdmI GAANNNNTTC 2 cut(s) 452, 1361
PfeI GAWTC 2 cut(s) 1213, 1273
PinAI ACCGGT 1 cut(s) 279
PkrI GCNGC 8 cut(s) 38, 134, 379, 730, 741, 744, 747, 990
PleI GAGTC 3 cut(s) 55, 395, 1297
PpsI GAGTC 3 cut(s) 55, 395, 1297
Ppu21I YACGTR 1 cut(s) 1191
PpuMI RGGWCCY 2 cut(s) 603, 622
Psp5II RGGWCCY 2 cut(s) 603, 622
Psp6I CCWGG 1 cut(s) 1315
PspGI CCWGG 1 cut(s) 1315
PspN4I GGNNCC 9 cut(s) 144, 284, 389, 521, 546, 605, 623, 624, 1254
PspPI GGNCC 3 cut(s) 520, 603, 622
PspPPI RGGWCCY 2 cut(s) 603, 622
RsaI GTAC 5 cut(s) 479, 509, 668, 692, 1189
RsaNI GTAC 5 cut(s) 478, 508, 667, 691, 1188
RseI CAYNNNNRTG 2 cut(s) 595, 1400
SacII CCGCGG 1 cut(s) 461
SaqAI TTAA 3 cut(s) 93, 663, 1386
SatI GCNGC 8 cut(s) 37, 133, 378, 729, 740, 743, 746, 989
Sau3AI GATC 3 cut(s) 65, 304, 753
Sau96I GGNCC 3 cut(s) 520, 603, 622
ScaI AGTACT 1 cut(s) 692
SchI GAGTC 3 cut(s) 56, 395, 1298
ScrFI CCNGG 3 cut(s) 272, 733, 1317
SduI GDGCHC 2 cut(s) 392, 592
SfaNI GCATC 2 cut(s) 86, 691
Sfr274I CTCGAG 1 cut(s) 253
Sfr303I CCGCGG 1 cut(s) 461
SfuI TTCGAA 1 cut(s) 686
SgrBI CCGCGG 1 cut(s) 461
SinI GGWCC 3 cut(s) 520, 603, 622
SlaI CTCGAG 1 cut(s) 253
SmiMI CAYNNNNRTG 2 cut(s) 595, 1400
SmlI CTYRAG 3 cut(s) 211, 253, 344
SmoI CTYRAG 3 cut(s) 211, 253, 344
Sse9I AATT 1 cut(s) 1348
SsiI CCGC 9 cut(s) 36, 378, 415, 458, 460, 728, 746, 791, 1049
SspMI CTAG 5 cut(s) 14, 57, 81, 147, 1439
StyD4I CCNGG 3 cut(s) 270, 731, 1315
StyI CCWWGG 2 cut(s) 146, 1401
TaaI ACNGT 1 cut(s) 948
TaiI ACGT 4 cut(s) 659, 870, 971, 1193
TaqI TCGA 8 cut(s) 98, 254, 336, 399, 411, 686, 1019, 1167
TasI AATT 1 cut(s) 1348
TatI WGTACW 1 cut(s) 690
TauI GCSGC 4 cut(s) 39, 380, 731, 748
TfiI GAWTC 2 cut(s) 1213, 1273
Tru1I TTAA 3 cut(s) 93, 663, 1386
Tru9I TTAA 3 cut(s) 93, 663, 1386
TscAI CASTG 2 cut(s) 784, 806
TseFI GTSAC 5 cut(s) 48, 266, 779, 863, 1154
TseI GCWGC 4 cut(s) 132, 739, 742, 988
Tsp45I GTSAC 5 cut(s) 48, 266, 779, 863, 1154
TspDTI ATGAA 4 cut(s) 306, 653, 857, 1058
TspGWI ACGGA 4 cut(s) 188, 537, 1214, 1319
TspRI CASTG 2 cut(s) 784, 806
VpaK11BI GGWCC 3 cut(s) 520, 603, 622
XapI RAATTY 1 cut(s) 1348
XcmI CCANNNNNNNNNTGG 1 cut(s) 1399
XhoI CTCGAG 1 cut(s) 253
XmaJI CCTAGG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 1292
XmnI GAANNNNTTC 2 cut(s) 452, 1361
XspI CTAG 5 cut(s) 14, 57, 81, 147, 1439
ZrmI AGTACT 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.