Rmu_sc0005629.1_g000018

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005629.1
OG0000255
Physical Location & Seq
Forward (+)
59773 .. 62161
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005629.1_g000018.1.cds

Sequence Viewer

Length: 576 bp
atggcatggccagtggcgctggctggtttgtcacttgttgtcagtcagcaggaattggggtcccctacatcagacgacttgatggtgactaatgaaggaggtggtggctgtatggacctggtatggaaccagagaaaaagccttgaaaatggaagagccatattgattgctctggtgaagtcggtgttgcagatgcttcgaatgacactgagtttgctgaggtggaagaagttgacaaggaagaagaggatatcacatccacagctcaaccgcaacccgaacccgcttccgccgaccccttcatcaattccatggtcgcctatttcaacaacctcaacaagccaacttgaaacccccgacctctcctccgacaacctttgcctcgatctcttcttccatgtcgtaccgaacattccagcatcctatctccaccagcagctccctcttgcttgggcccatgatgccttaaccaccctcaagctcatctgcaacctccgcggcgtgcacagcactggaaagcccgacaaagaaggattctacacggcggtgctctatagaactatggatctgagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

191

Amino Acids

21.22

Weight (kDa)

9.3

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 498
AciI CCGC 6 cut(s) 271, 284, 290, 496, 498, 545
AclWI GGATC 1 cut(s) 573
AcoI YGGCCR 1 cut(s) 8
AfaI GTAC 1 cut(s) 405
AgsI TTSAA 3 cut(s) 146, 327, 350
AjnI CCWGG 1 cut(s) 117
AleI CACNNNNGTG 1 cut(s) 545
AluBI AGCT 3 cut(s) 265, 439, 481
AluI AGCT 3 cut(s) 265, 439, 481
Alw21I GWGCWC 2 cut(s) 507, 552
Alw44I GTGCAC 1 cut(s) 503
AlwI GGATC 1 cut(s) 573
AoxI GGCC 2 cut(s) 8, 453
ApaI GGGCCC 1 cut(s) 457
ApaLI GTGCAC 1 cut(s) 503
ApeKI GCWGC 1 cut(s) 436
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 4 cut(s) 60, 115, 453, 454
AsuHPI GGTGA 2 cut(s) 97, 187
AsuII TTCGAA 1 cut(s) 199
AvaII GGWCC 2 cut(s) 60, 115
BaeGI GKGCMC 2 cut(s) 457, 507
BalI TGGCCA 1 cut(s) 10
BanII GRGCYC 1 cut(s) 457
Bbv12I GWGCWC 2 cut(s) 507, 552
BbvCI CCTCAGC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 448
BccI CCATC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 558
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 553
BfoI RGCGCY 1 cut(s) 20
BisI GCNGC 2 cut(s) 437, 499
BlsI GCNGC 2 cut(s) 438, 500
Bme1390I CCNGG 1 cut(s) 119
Bme18I GGWCC 2 cut(s) 60, 115
BmgT120I GGNCC 4 cut(s) 60, 115, 453, 454
BmiI GGNNCC 4 cut(s) 61, 62, 128, 455
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 3 cut(s) 183, 428, 451
Bpu10I CCTNAGC 1 cut(s) 218
Bpu14I TTCGAA 1 cut(s) 199
BpuEI CTTGAG 1 cut(s) 461
BsaJI CCNNGG 2 cut(s) 311, 496
BsaXI ACNNNNNCTCC 2 cut(s) 350, 380
Bse1I ACTGG 2 cut(s) 11, 517
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 311, 496
BseGI GGATG 2 cut(s) 256, 419
BseMII CTCAG 3 cut(s) 200, 209, 560
BseNI ACTGG 2 cut(s) 11, 517
BseRI GAGGAG 1 cut(s) 355
BseSI GKGCMC 2 cut(s) 457, 507
BseXI GCAGC 1 cut(s) 448
Bsh1236I CGCG 1 cut(s) 498
BshFI GGCC 2 cut(s) 10, 455
BsiHKAI GWGCWC 2 cut(s) 507, 552
BslFI GGGAC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 2 cut(s) 10, 455
Bsp119I TTCGAA 1 cut(s) 199
Bsp120I GGGCCC 1 cut(s) 453
Bsp1286I GDGCHC 3 cut(s) 457, 507, 552
Bsp143I GATC 2 cut(s) 385, 565
Bsp19I CCATGG 1 cut(s) 311
BspACI CCGC 6 cut(s) 271, 284, 290, 496, 498, 545
BspANI GGCC 2 cut(s) 10, 455
BspCNI CTCAG 3 cut(s) 201, 210, 561
BspFNI CGCG 1 cut(s) 498
BspLI GGNNCC 4 cut(s) 61, 62, 128, 455
BspPI GGATC 1 cut(s) 573
BspQI GCTCTTC 1 cut(s) 148
BspT104I TTCGAA 1 cut(s) 199
BsrI ACTGG 2 cut(s) 11, 517
BssECI CCNNGG 2 cut(s) 311, 496
BssMI GATC 2 cut(s) 385, 565
BssT1I CCWWGG 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 119
Bst6I CTCTTC 3 cut(s) 148, 239, 395
BstBI TTCGAA 1 cut(s) 199
BstC8I GCNNGC 2 cut(s) 21, 503
BstDEI CTNAG 3 cut(s) 209, 218, 569
BstDSI CCRYGG 2 cut(s) 311, 496
BstF5I GGATG 2 cut(s) 256, 419
BstFNI CGCG 1 cut(s) 498
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 2 cut(s) 388, 568
BstMBI GATC 2 cut(s) 385, 565
BstMWI GCNNNNNNNGC 4 cut(s) 16, 461, 495, 507
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 553
BstSLI GKGCMC 2 cut(s) 457, 507
BstUI CGCG 1 cut(s) 498
BstV1I GCAGC 1 cut(s) 448
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
BsuRI GGCC 2 cut(s) 10, 455
BtgI CCRYGG 2 cut(s) 311, 496
BtsCI GGATG 2 cut(s) 256, 419
BtsIMutI CAGTG 3 cut(s) 18, 206, 510
Cac8I GCNNGC 2 cut(s) 21, 503
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 4 cut(s) 60, 115, 453, 454
Cfr42I CCGCGG 1 cut(s) 499
CsiI ACCWGGT 1 cut(s) 117
Csp6I GTAC 1 cut(s) 404
CviAII CATG 4 cut(s) 6, 312, 398, 458
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 3 cut(s) 209, 218, 569
DpnI GATC 2 cut(s) 387, 567
DpnII GATC 2 cut(s) 385, 565
EaeI YGGCCR 1 cut(s) 8
Eam1104I CTCTTC 3 cut(s) 148, 239, 395
EarI CTCTTC 3 cut(s) 148, 239, 395
EciI GGCGGA 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 311
Eco24I GRGCYC 1 cut(s) 457
Eco32I GATATC 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 60, 115
EcoO109I RGGNCCY 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 117
EcoRV GATATC 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 311
EcoT38I GRGCYC 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 311
FaeI CATG 4 cut(s) 9, 315, 401, 461
FaiI YATR 9 cut(s) 7, 113, 124, 161, 313, 399, 459, 555, 563
FaqI GGGAC 1 cut(s) 46
FatI CATG 4 cut(s) 5, 311, 397, 457
FauI CCCGC 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 437, 499
FokI GGATG 2 cut(s) 243, 406
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 2 cut(s) 437, 499
GlaI GCGC 1 cut(s) 18
GluI GCNGC 2 cut(s) 437, 499
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 2 cut(s) 10, 455
HhaI GCGC 1 cut(s) 19
Hin1II CATG 4 cut(s) 9, 315, 401, 461
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 1 cut(s) 534
HphI GGTGA 2 cut(s) 97, 187
Hpy166II GTNNAC 2 cut(s) 234, 505
Hpy188I TCNGA 3 cut(s) 73, 370, 570
Hpy8I GTNNAC 2 cut(s) 234, 505
HpyAV CCTTC 3 cut(s) 89, 309, 524
HpyCH4V TGCA 3 cut(s) 190, 489, 505
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 461, 495, 507
HpyF3I CTNAG 3 cut(s) 209, 218, 569
Hsp92II CATG 4 cut(s) 9, 315, 401, 461
HspAI GCGC 1 cut(s) 17
KflI GGGWCCC 1 cut(s) 60
KspI CCGCGG 1 cut(s) 499
Kzo9I GATC 2 cut(s) 385, 565
LguI GCTCTTC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 444
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 3 cut(s) 183, 428, 451
MabI ACCWGGT 1 cut(s) 117
MaeIII GTNAC 2 cut(s) 30, 85
MalI GATC 2 cut(s) 387, 567
MboI GATC 2 cut(s) 385, 565
MboII GAAGA 6 cut(s) 165, 238, 253, 256, 382, 385
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 3 cut(s) 457, 507, 552
MlsI TGGCCA 1 cut(s) 10
MluCI AATT 2 cut(s) 53, 306
MluNI TGGCCA 1 cut(s) 10
MmeI TCCRAC 1 cut(s) 393
Mox20I TGGCCA 1 cut(s) 10
MscI TGGCCA 1 cut(s) 10
MseI TTAA 1 cut(s) 467
MslI CAYNNNNRTG 1 cut(s) 545
Msp20I TGGCCA 1 cut(s) 10
MspA1I CMGCKG 1 cut(s) 498
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 498
MwoI GCNNNNNNNGC 4 cut(s) 16, 461, 495, 507
NcoI CCATGG 1 cut(s) 311
NdeII GATC 2 cut(s) 385, 565
NlaIII CATG 4 cut(s) 9, 315, 401, 461
NlaIV GGNNCC 4 cut(s) 61, 62, 128, 455
NmuCI GTSAC 2 cut(s) 30, 85
NspV TTCGAA 1 cut(s) 199
OliI CACNNNNGTG 1 cut(s) 545
PciSI GCTCTTC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 534
PkrI GCNGC 2 cut(s) 438, 500
PpuMI RGGWCCY 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 4 cut(s) 61, 62, 128, 455
PspOMI GGGCCC 1 cut(s) 453
PspPI GGNCC 4 cut(s) 60, 115, 453, 454
PspPPI RGGWCCY 1 cut(s) 60
PsuI RGATCY 1 cut(s) 565
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 545
SacII CCGCGG 1 cut(s) 499
SapI GCTCTTC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 467
SatI GCNGC 2 cut(s) 437, 499
Sau3AI GATC 2 cut(s) 385, 565
Sau96I GGNCC 4 cut(s) 60, 115, 453, 454
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 3 cut(s) 457, 507, 552
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 3 cut(s) 183, 428, 451
SfcI CTRYAG 1 cut(s) 553
Sfr303I CCGCGG 1 cut(s) 499
SfuI TTCGAA 1 cut(s) 199
SgrBI CCGCGG 1 cut(s) 499
SinI GGWCC 2 cut(s) 60, 115
SmiMI CAYNNNNRTG 1 cut(s) 545
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 2 cut(s) 53, 306
SsiI CCGC 6 cut(s) 271, 284, 290, 496, 498, 545
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 311
TaqI TCGA 2 cut(s) 199, 384
TasI AATT 2 cut(s) 53, 306
TauI GCSGC 1 cut(s) 501
TfiI GAWTC 1 cut(s) 534
Tru1I TTAA 1 cut(s) 467
Tru9I TTAA 1 cut(s) 467
TscAI CASTG 3 cut(s) 18, 213, 517
TseFI GTSAC 2 cut(s) 30, 85
TseI GCWGC 1 cut(s) 436
Tsp45I GTSAC 2 cut(s) 30, 85
TspDTI ATGAA 2 cut(s) 108, 291
TspRI CASTG 3 cut(s) 18, 213, 517
VneI GTGCAC 1 cut(s) 503
VpaK11BI GGWCC 2 cut(s) 60, 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.