FvH4_4g23010

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000255
Physical Location & Seq
Reverse (-)
25628295 .. 25630235
1941 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23010.t1

Sequence Viewer

Length: 1941 bp
ATGGCTCCTCCTAGTCTTCTCGGTCCTCCAGAGCTCCACAAACCCTCACCCGCCACCGCTCCGCCGCCCCAACCCGACTCCAAACCCGACACCGGCGAACCCTTCGTCGACCTCATGGTGGAGAATTTCAACGAATTGGACACCAACGAGAAGCACGACCTCCCTATGGGCCTGACGGAGAACAACTCGGCGACGTTTCTCTCCACCGGCAACCCCTGCCTCGACCTCTTCTTCCACGTCGTCCCGGACACTCCGGCCGACTACCTCCGCGAGCAGCTCCCCAAGGCGTGGGAGCGCGACGCGCTCACCACGCTCAAGCTCATCTGCAACCTCCGCGGCGTTCGCGGCACCGGGAAATCCGACAAGGAAGGCTTCCACACGGCGGCGGTGTGGCTCCACAACCACCACCCCAAAACCCTCGCCTGCAACCTCGCCACCTTCGCCGAGTTCGGCTACTTCAAGGACCTCCCGGAGTTCCTCTACCGCCTCCTGGAGGGCGAGGACGTGCGGAAGAAGCAAAAAGAGGAGTGGCGGCAGAAGAAACGCGCCTCCGGGTCGAAGCGGCGCAAGTCGGGTCGGGAAGAAGGATCCGACGGCGAGAAGAAGAGAATCAAGAGCGAGGTGCCGAAAGAGGAGAGAGAAAAGAAAGCCAAGGAGTGGCAGATGGGGCAGAAGGCCAAGGCGAGCGTGCTGAAGAAGGAGAAGAAGATCGCCATGGCCAAGAAAGCCGTCGGCCGTTACGATCGCGACCCGGATTTCCGGTTCCTCCACGACCGGGTCTCGGATCTTTTCGCCGAGTGCTTGAAATCCGATACGGAAAATCTCAACTCCAATAACCTCAAGAACATTACCCTCGCCGCGAAATGGTGCCCTTCCACCGACTCGTCGTTCGATCGGGCCACTCTGATCTGCGAGAGCATCGCCAAGAAGATTTTCCCGCGTGAATCGAATAAAGAGTACGAAGGAATGGAGGAGTCGCATTATGCTTACAGAGTGAGGGACCGGCTGAGGAAGGAGGTGCTGGTGCCGCTGAGGAAGGCGTTGGAGCTGCCGGAGATTTTCATGGGGGCAAACGAGTGGGGGAAGATTCCGTACAACAGGGTGGCCTCGGTGGCGATGAAGCTCTACAAGGACAAGTTCAAGAAGCACGATGAGGAGAGGTTTAATAAGTACTTGGAGGATGTGAAAGCCGGGAAGGCCAAGATCGCCGCCGGAGCTCTGCTTCCGCATGAGATCATAGGGTCTTTGAACGACGGTGAGGATGACAAGGGGGAGGTGGCGGAGCTGCAGTGGAAGAGAATGGTGGATGATATGTTGACATTGGGGAAGATGAAGAATTGTTTGGCTGTTTGTGATGTGAGTGGGAGCATGAGTGGGACGCCGATGGAGGTTTCGGTTGCGCTGGGGCTGCTGGTTTCGGAGTTGAGTGAGGACCCGTGGAAAGGGCTGGTGGTGACTTTCAGTGAGAGTCCGCAGCTGCATTTGGTGCAGGGGGAGAGTCTGAAGGAGAAGACTGATTTCGTAAGGGAGATGGATTGGGGGATGAACACTGATTTCCAGAAGGTGTTTGATTTGGTTCTCAAAGTGGCTGTCAAGGGGTGTTTGAAGCCGGAGCATATGGTGAAGAGGGTGTTTGTGTTCAGTGACATGGAGTTTGATGAGGCTTCGGCGAATAACTGGGAGACAGATTATGAGATGATTGAGAAGAAGTTTAGGCAGGCCGGGTATGGGGATGCGATTCCGCAGTTGGTGTTTTGGAATCTGAGGCACTCCAGGTCTATTCCTGTGCCTGGGAATCAGAAAGGGACTGCTCTGCTTAGTGGCTTCTCTAAGAACTTGCTCAAGCTTTTTATGGATAATGATGGGGAGGTTCAGCCGGATAAGTTCATGGATTTGGCCATTGCTGGACCTGAGTATCAGAAGCTGGTTGTGCTGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

647

Amino Acids

73.36

Weight (kDa)

6.59

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2828 PF11443 59 - 444 1.1e-141 Domain of unknown function (DUF2828)
DUF7788 PF25043 446 - 625 2.5e-79 Domain of unknown function (DUF7788)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 347, 622, 867, 1024
AccB7I CCANNNNNTGG 2 cut(s) 288, 657
AccBSI CCGCTC 1 cut(s) 59
AccI GTMKAC 1 cut(s) 108
AccII CGCG 9 cut(s) 270, 297, 302, 336, 345, 546, 747, 860, 940
AclWI GGATC 3 cut(s) 582, 595, 792
AcoI YGGCCR 4 cut(s) 255, 717, 733, 1896
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 2 cut(s) 713, 1523
AcyI GRCGYC 1 cut(s) 1379
AfaI GTAC 3 cut(s) 959, 1094, 1172
AgsI TTSAA 6 cut(s) 130, 460, 805, 1141, 1249, 1606
AjiI CACGTC 2 cut(s) 238, 505
AjnI CCWGG 3 cut(s) 489, 1772, 1789
AjuI GAANNNNNNNTTGG 4 cut(s) 917, 949, 1325, 1357
AloI GAACNNNNNNTCC 2 cut(s) 746, 778
Alw21I GWGCWC 2 cut(s) 36, 1219
Alw26I GTCTC 2 cut(s) 784, 1676
AlwI GGATC 3 cut(s) 582, 595, 792
AlwNI CAGNNNCTG 1 cut(s) 1924
ApeKI GCWGC 6 cut(s) 274, 1048, 1285, 1408, 1474, 1477
ApoI RAATTY 1 cut(s) 124
ArsI GACNNNNNNTTYG 8 cut(s) 90, 122, 872, 904, 1575, 1607, 1637, 1669
Asp700I GAANNNNTTC 1 cut(s) 932
AspLEI GCGC 5 cut(s) 297, 304, 548, 567, 1402
AspS9I GGNCC 7 cut(s) 23, 169, 463, 897, 1000, 1432, 1907
AsuC2I CCSGG 8 cut(s) 245, 352, 470, 553, 752, 776, 1192, 1723
AsuHPI GGTGA 5 cut(s) 39, 298, 1268, 1465, 1633
AvaII GGWCC 5 cut(s) 23, 463, 1000, 1432, 1907
BaeGI GKGCMC 1 cut(s) 872
BaeI ACNNNNGTAYC 2 cut(s) 1898, 1931
BalI TGGCCA 2 cut(s) 719, 1898
BamHI GGATCC 1 cut(s) 587
BanI GGYRCC 4 cut(s) 347, 622, 867, 1024
BanII GRGCYC 2 cut(s) 36, 1219
BarI GAAGNNNNNNTAC 2 cut(s) 1076, 1108
BbsI GAAGAC 2 cut(s) 8, 1517
Bbv12I GWGCWC 2 cut(s) 36, 1219
BbvCI CCTCAGC 2 cut(s) 1007, 1031
BbvI GCAGC 6 cut(s) 286, 1035, 1272, 1395, 1464, 1486
BccI CCATC 4 cut(s) 658, 1378, 1525, 1856
BceAI ACGGC 4 cut(s) 396, 610, 713, 720
BciT130I CCWGG 3 cut(s) 491, 1774, 1791
BcnI CCSGG 8 cut(s) 245, 352, 470, 553, 752, 776, 1192, 1723
BcoDI GTCTC 2 cut(s) 784, 1676
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 1286
BglI GCCNNNNNGGC 2 cut(s) 1112, 1196
BmcAI AGTACT 1 cut(s) 1172
Bme18I GGWCC 5 cut(s) 23, 463, 1000, 1432, 1907
BmgBI CACGTC 2 cut(s) 238, 505
BmgT120I GGNCC 7 cut(s) 23, 169, 463, 897, 1000, 1432, 1907
BmrI ACTGGG 1 cut(s) 1687
BmsI GCATC 2 cut(s) 927, 1723
BmuI ACTGGG 1 cut(s) 1687
BpiI GAAGAC 2 cut(s) 8, 1517
BplI GAGNNNNNCTC 2 cut(s) 170, 202
BpmI CTGGAG 3 cut(s) 12, 512, 1756
Bpu10I CCTNAGC 2 cut(s) 1007, 1031
BpuEI CTTGAG 3 cut(s) 299, 824, 1826
BpuMI CCSGG 8 cut(s) 245, 352, 470, 553, 752, 776, 1192, 1723
BsaHI GRCGYC 1 cut(s) 1379
BsaI GGTCTC 1 cut(s) 784
BsaJI CCNNGG 8 cut(s) 282, 334, 651, 678, 714, 1107, 1436, 1790
BsaWI WCCGGW 1 cut(s) 759
BsaXI ACNNNNNCTCC 4 cut(s) 1274, 1304, 1357, 1387
Bse118I RCCGGY 3 cut(s) 92, 206, 1002
Bse1I ACTGG 1 cut(s) 1682
Bse3DI GCAATG 1 cut(s) 1899
BseBI CCWGG 3 cut(s) 491, 1774, 1791
BseDI CCNNGG 8 cut(s) 282, 334, 651, 678, 714, 1107, 1436, 1790
BseGI GGATG 5 cut(s) 1186, 1267, 1312, 1548, 1738
BseMI GCAATG 1 cut(s) 1899
BseMII CTCAG 4 cut(s) 998, 1022, 1754, 1902
BseNI ACTGG 1 cut(s) 1682
BseRI GAGGAG 4 cut(s) 539, 647, 986, 1169
BseSI GKGCMC 1 cut(s) 872
BseX3I CGGCCG 2 cut(s) 255, 733
BseXI GCAGC 6 cut(s) 286, 1035, 1272, 1395, 1464, 1486
BseYI CCCAGC 1 cut(s) 1402
BsgI GTGCAG 1 cut(s) 1508
Bsh1236I CGCG 9 cut(s) 270, 297, 302, 336, 345, 546, 747, 860, 940
Bsh1285I CGRYCG 5 cut(s) 258, 736, 745, 775, 895
BshNI GGYRCC 4 cut(s) 347, 622, 867, 1024
BsiEI CGRYCG 5 cut(s) 258, 736, 745, 775, 895
BsiHKAI GWGCWC 2 cut(s) 36, 1219
BslFI GGGAC 4 cut(s) 227, 1013, 1390, 1819
BsmAI GTCTC 2 cut(s) 784, 1676
BsmFI GGGAC 4 cut(s) 227, 1013, 1390, 1819
Bso31I GGTCTC 1 cut(s) 784
Bsp1286I GDGCHC 3 cut(s) 36, 872, 1219
Bsp143I GATC 8 cut(s) 587, 708, 742, 784, 892, 906, 1203, 1233
Bsp19I CCATGG 1 cut(s) 714
Bsp68I TCGCGA 1 cut(s) 747
BspCNI CTCAG 4 cut(s) 999, 1023, 1755, 1903
BspFNI CGCG 9 cut(s) 270, 297, 302, 336, 345, 546, 747, 860, 940
BspMAI CTGCAG 1 cut(s) 1290
BspPI GGATC 3 cut(s) 582, 595, 792
BspT107I GGYRCC 4 cut(s) 347, 622, 867, 1024
BspTNI GGTCTC 1 cut(s) 784
BsrBI CCGCTC 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 1899
BsrFI RCCGGY 3 cut(s) 92, 206, 1002
BsrI ACTGG 1 cut(s) 1682
BssAI RCCGGY 3 cut(s) 92, 206, 1002
BssECI CCNNGG 8 cut(s) 282, 334, 651, 678, 714, 1107, 1436, 1790
BssMI GATC 8 cut(s) 587, 708, 742, 784, 892, 906, 1203, 1233
BssNI GRCGYC 1 cut(s) 1379
BssT1I CCWWGG 4 cut(s) 282, 651, 678, 714
Bst2UI CCWGG 3 cut(s) 491, 1774, 1791
Bst4CI ACNGT 1 cut(s) 1256
Bst6I CTCTTC 4 cut(s) 233, 599, 1289, 1619
BstACI GRCGYC 1 cut(s) 1379
BstAPI GCANNNNNTGC 2 cut(s) 216, 1486
BstC8I GCNNGC 5 cut(s) 272, 424, 685, 689, 1719
BstDEI CTNAG 6 cut(s) 1007, 1031, 1763, 1817, 1830, 1911
BstDSI CCRYGG 3 cut(s) 334, 714, 1436
BstENI CCTNNNNNAGG 1 cut(s) 491
BstF5I GGATG 5 cut(s) 1186, 1267, 1312, 1548, 1738
BstFNI CGCG 9 cut(s) 270, 297, 302, 336, 345, 546, 747, 860, 940
BstHHI GCGC 5 cut(s) 297, 304, 548, 567, 1402
BstKTI GATC 8 cut(s) 590, 711, 745, 787, 895, 909, 1206, 1236
BstMAI GTCTC 2 cut(s) 784, 1676
BstMBI GATC 8 cut(s) 587, 708, 742, 784, 892, 906, 1203, 1233
BstMCI CGRYCG 5 cut(s) 258, 736, 745, 775, 895
BstNI CCWGG 3 cut(s) 491, 1774, 1791
BstSFI CTRYAG 1 cut(s) 1286
BstSLI GKGCMC 1 cut(s) 872
BstUI CGCG 9 cut(s) 270, 297, 302, 336, 345, 546, 747, 860, 940
BstV1I GCAGC 6 cut(s) 286, 1035, 1272, 1395, 1464, 1486
BstV2I GAAGAC 2 cut(s) 8, 1517
BstX2I RGATCY 2 cut(s) 587, 784
BstYI RGATCY 2 cut(s) 587, 784
BstZI CGGCCG 2 cut(s) 255, 733
BtgI CCRYGG 3 cut(s) 334, 714, 1436
BtgZI GCGATG 2 cut(s) 904, 1130
BtrI CACGTC 2 cut(s) 238, 505
BtsCI GGATG 5 cut(s) 1186, 1267, 1312, 1548, 1738
BtsI GCAGTG 1 cut(s) 1295
BtsIMutI CAGTG 4 cut(s) 1295, 1468, 1548, 1648
BtuMI TCGCGA 1 cut(s) 747
Cac8I GCNNGC 5 cut(s) 272, 424, 685, 689, 1719
CaiI CAGNNNCTG 1 cut(s) 1924
CfoI GCGC 5 cut(s) 297, 304, 548, 567, 1402
Cfr10I RCCGGY 3 cut(s) 92, 206, 1002
Cfr13I GGNCC 7 cut(s) 23, 169, 463, 897, 1000, 1432, 1907
Cfr42I CCGCGG 1 cut(s) 337
CseI GACGC 2 cut(s) 308, 1387
Csp6I GTAC 3 cut(s) 958, 1093, 1171
CviAII CATG 7 cut(s) 115, 715, 1063, 1229, 1369, 1648, 1888
CviQI GTAC 3 cut(s) 958, 1093, 1171
DdeI CTNAG 6 cut(s) 1007, 1031, 1763, 1817, 1830, 1911
DpnI GATC 8 cut(s) 589, 710, 744, 786, 894, 908, 1205, 1235
DpnII GATC 8 cut(s) 587, 708, 742, 784, 892, 906, 1203, 1233
EaeI YGGCCR 4 cut(s) 255, 717, 733, 1896
EagI CGGCCG 2 cut(s) 255, 733
Eam1104I CTCTTC 4 cut(s) 233, 599, 1289, 1619
EarI CTCTTC 4 cut(s) 233, 599, 1289, 1619
EciI GGCGGA 2 cut(s) 51, 1295
Ecl136II GAGCTC 2 cut(s) 34, 1217
EclXI CGGCCG 2 cut(s) 255, 733
Eco130I CCWWGG 4 cut(s) 282, 651, 678, 714
Eco24I GRGCYC 2 cut(s) 36, 1219
Eco31I GGTCTC 1 cut(s) 784
Eco47I GGWCC 5 cut(s) 23, 463, 1000, 1432, 1907
Eco52I CGGCCG 2 cut(s) 255, 733
Eco53kI GAGCTC 2 cut(s) 34, 1217
Eco57I CTGAAG 2 cut(s) 713, 1523
EcoICRI GAGCTC 2 cut(s) 34, 1217
EcoNI CCTNNNNNAGG 1 cut(s) 491
EcoO109I RGGNCCY 2 cut(s) 463, 1432
EcoRII CCWGG 3 cut(s) 489, 1772, 1789
EcoT14I CCWWGG 4 cut(s) 282, 651, 678, 714
EcoT38I GRGCYC 2 cut(s) 36, 1219
ErhI CCWWGG 4 cut(s) 282, 651, 678, 714
FaeI CATG 7 cut(s) 118, 718, 1066, 1232, 1372, 1651, 1891
FalI AAGNNNNNCTT 2 cut(s) 356, 388
FaqI GGGAC 4 cut(s) 227, 1013, 1390, 1819
FatI CATG 7 cut(s) 114, 714, 1062, 1228, 1368, 1647, 1887
FauI CCCGC 2 cut(s) 58, 945
FauNDI CATATG 1 cut(s) 1617
FblI GTMKAC 1 cut(s) 108
FokI GGATG 5 cut(s) 1193, 1274, 1319, 1555, 1745
FriOI GRGCYC 2 cut(s) 36, 1219
FspBI CTAG 1 cut(s) 12
GlaI GCGC 5 cut(s) 296, 303, 547, 566, 1401
GsaI CCCAGC 1 cut(s) 1406
GsuI CTGGAG 3 cut(s) 12, 512, 1756
HgaI GACGC 2 cut(s) 308, 1387
HhaI GCGC 5 cut(s) 297, 304, 548, 567, 1402
Hin1I GRCGYC 1 cut(s) 1379
Hin1II CATG 7 cut(s) 118, 718, 1066, 1232, 1372, 1651, 1891
Hin6I GCGC 5 cut(s) 295, 302, 546, 565, 1400
HinP1I GCGC 5 cut(s) 295, 302, 546, 565, 1400
HincII GTYRAC 2 cut(s) 109, 1317
HindII GTYRAC 2 cut(s) 109, 1317
HindIII AAGCTT 1 cut(s) 1844
HphI GGTGA 5 cut(s) 39, 298, 1268, 1465, 1633
Hpy166II GTNNAC 2 cut(s) 109, 1317
Hpy188III TCNNGA 7 cut(s) 29, 578, 613, 746, 841, 1141, 1558
Hpy8I GTNNAC 2 cut(s) 109, 1317
Hpy99I CGWCG 8 cut(s) 110, 196, 242, 302, 596, 734, 889, 1256
HpyCH4III ACNGT 1 cut(s) 1256
HpyCH4IV ACGT 3 cut(s) 194, 237, 504
HpyCH4V TGCA 5 cut(s) 327, 426, 1288, 1480, 1489
HpyF3I CTNAG 6 cut(s) 1007, 1031, 1763, 1817, 1830, 1911
HpySE526I ACGT 3 cut(s) 194, 237, 504
Hsp92I GRCGYC 1 cut(s) 1379
Hsp92II CATG 7 cut(s) 118, 718, 1066, 1232, 1372, 1651, 1891
HspAI GCGC 5 cut(s) 295, 302, 546, 565, 1400
KspI CCGCGG 1 cut(s) 337
Kzo9I GATC 8 cut(s) 587, 708, 742, 784, 892, 906, 1203, 1233
Lsp1109I GCAGC 6 cut(s) 286, 1035, 1272, 1395, 1464, 1486
LweI GCATC 2 cut(s) 927, 1723
MaeI CTAG 1 cut(s) 12
MaeII ACGT 3 cut(s) 194, 237, 504
MaeIII GTNAC 3 cut(s) 737, 1453, 1643
MalI GATC 8 cut(s) 589, 710, 744, 786, 894, 908, 1205, 1235
MbiI CCGCTC 1 cut(s) 59
MboI GATC 8 cut(s) 587, 708, 742, 784, 892, 906, 1203, 1233
MflI RGATCY 2 cut(s) 587, 784
MhlI GDGCHC 3 cut(s) 36, 872, 1219
MlsI TGGCCA 2 cut(s) 719, 1898
MluCI AATT 3 cut(s) 124, 134, 1336
MluNI TGGCCA 2 cut(s) 719, 1898
MlyI GAGTC 5 cut(s) 71, 875, 983, 1477, 1507
MmeI TCCRAC 3 cut(s) 384, 615, 1023
Mox20I TGGCCA 2 cut(s) 719, 1898
MroXI GAANNNNTTC 1 cut(s) 932
MscI TGGCCA 2 cut(s) 719, 1898
MseI TTAA 1 cut(s) 1164
Msp20I TGGCCA 2 cut(s) 719, 1898
MspA1I CMGCKG 3 cut(s) 336, 1030, 1477
MvaI CCWGG 3 cut(s) 491, 1774, 1791
MvnI CGCG 9 cut(s) 270, 297, 302, 336, 345, 546, 747, 860, 940
NciI CCSGG 8 cut(s) 245, 352, 470, 553, 752, 776, 1192, 1723
NcoI CCATGG 1 cut(s) 714
NdeI CATATG 1 cut(s) 1617
NdeII GATC 8 cut(s) 587, 708, 742, 784, 892, 906, 1203, 1233
NlaIII CATG 7 cut(s) 118, 718, 1066, 1232, 1372, 1651, 1891
NmeAIII GCCGAG 3 cut(s) 167, 469, 820
NmuCI GTSAC 2 cut(s) 1453, 1643
NruI TCGCGA 1 cut(s) 747
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 738
PdmI GAANNNNTTC 1 cut(s) 932
PfeI GAWTC 6 cut(s) 609, 944, 1087, 1738, 1759, 1795
PflFI GACNNNGTC 1 cut(s) 776
PflMI CCANNNNNTGG 2 cut(s) 288, 657
PfoI TCCNGGA 3 cut(s) 243, 468, 489
Ple19I CGATCG 2 cut(s) 745, 895
PleI GAGTC 5 cut(s) 71, 875, 982, 1476, 1506
PpsI GAGTC 5 cut(s) 71, 875, 982, 1476, 1506
PpuMI RGGWCCY 2 cut(s) 463, 1432
Psp124BI GAGCTC 2 cut(s) 36, 1219
Psp5II RGGWCCY 2 cut(s) 463, 1432
Psp6I CCWGG 3 cut(s) 489, 1772, 1789
PspFI CCCAGC 1 cut(s) 1402
PspGI CCWGG 3 cut(s) 489, 1772, 1789
PspPI GGNCC 7 cut(s) 23, 169, 463, 897, 1000, 1432, 1907
PspPPI RGGWCCY 2 cut(s) 463, 1432
PstI CTGCAG 1 cut(s) 1290
PstNI CAGNNNCTG 1 cut(s) 1924
PsuI RGATCY 2 cut(s) 587, 784
PsyI GACNNNGTC 1 cut(s) 776
PvuI CGATCG 2 cut(s) 745, 895
PvuII CAGCTG 1 cut(s) 1477
RruI TCGCGA 1 cut(s) 747
RsaI GTAC 3 cut(s) 959, 1094, 1172
RsaNI GTAC 3 cut(s) 958, 1093, 1171
SacI GAGCTC 2 cut(s) 36, 1219
SacII CCGCGG 1 cut(s) 337
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 1164
Sau3AI GATC 8 cut(s) 587, 708, 742, 784, 892, 906, 1203, 1233
Sau96I GGNCC 7 cut(s) 23, 169, 463, 897, 1000, 1432, 1907
ScaI AGTACT 1 cut(s) 1172
SchI GAGTC 5 cut(s) 71, 875, 983, 1477, 1507
SduI GDGCHC 3 cut(s) 36, 872, 1219
SfaNI GCATC 2 cut(s) 927, 1723
SfcI CTRYAG 1 cut(s) 1286
Sfr303I CCGCGG 1 cut(s) 337
SgrAI CRCCGGYG 1 cut(s) 92
SgrBI CCGCGG 1 cut(s) 337
SinI GGWCC 5 cut(s) 23, 463, 1000, 1432, 1907
SmlI CTYRAG 3 cut(s) 314, 839, 1841
SmoI CTYRAG 3 cut(s) 314, 839, 1841
Sse9I AATT 3 cut(s) 124, 134, 1336
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 2 cut(s) 36, 1219
StyI CCWWGG 4 cut(s) 282, 651, 678, 714
TaaI ACNGT 1 cut(s) 1256
TaiI ACGT 3 cut(s) 197, 240, 507
TaqI TCGA 5 cut(s) 108, 222, 557, 891, 947
TaqII GACCGA 1 cut(s) 11
TasI AATT 3 cut(s) 124, 134, 1336
TatI WGTACW 1 cut(s) 1170
TauI GCSGC 9 cut(s) 67, 339, 348, 386, 535, 565, 860, 1030, 1211
TfiI GAWTC 6 cut(s) 609, 944, 1087, 1738, 1759, 1795
Tru1I TTAA 1 cut(s) 1164
Tru9I TTAA 1 cut(s) 1164
TscAI CASTG 4 cut(s) 1295, 1468, 1555, 1648
TseFI GTSAC 2 cut(s) 1453, 1643
TseI GCWGC 6 cut(s) 274, 1048, 1285, 1408, 1474, 1477
Tsp45I GTSAC 2 cut(s) 1453, 1643
TspDTI ATGAA 5 cut(s) 1051, 1133, 1346, 1559, 1876
TspGWI ACGGA 3 cut(s) 191, 830, 1080
TspRI CASTG 4 cut(s) 1295, 1468, 1555, 1648
Tth111I GACNNNGTC 1 cut(s) 776
Van91I CCANNNNNTGG 2 cut(s) 288, 657
VpaK11BI GGWCC 5 cut(s) 23, 463, 1000, 1432, 1907
XagI CCTNNNNNAGG 1 cut(s) 491
XapI RAATTY 1 cut(s) 124
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 1 cut(s) 932
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 1172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.