Rmu_sc0001801.1_g000027

Domain of unknown function (DUF2828)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001801.1
OG0000255
Physical Location & Seq
Reverse (-)
90848 .. 91171
324 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001801.1_g000027.1.cds

Sequence Viewer

Length: 324 bp
atgaggagatcacatccacagctcaaccgcaacccaaacccacttccgccgaccccttcatcaattccatggtcgccgatttcaacaagccaacttgaaacccccgacctctcctccgacaacctttgcctcgatctcttcttccatgtcgtaccgaacactccagcatcctatctccaccagcagctccctctcgcttgggcccatgatgccttaaccaccctcaagctcatctgcaacctccgcggcgtgcacagcactggaaagcccgacaaagaaggattctacacggcggtgctctgtagaacaatggatctaagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2828

Protein Analysis

107

Amino Acids

12.0

Weight (kDa)

7.8

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000255)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24780 AT5G13210 AT5G43390 AT5G43400
fragaria_vesca FvH4_4g23010 FvH4_5g12462 FvH4_5g12490 FvH4_5g12491 FvH4_5g20030 FvH4_5g20031 FvH4_5g21510 FvH4_6g30070
malus_domestica MD00G1095100.v1.1 MD05G1186800.v1.1 MD05G1259500.v1.1 MD05G1260200.v1.1 MD06G1159400.v1.1 MD06G1159500.v1.1 MD06G1162500.v1.1 MD06G1164600.v1.1 MD06G1187800.v1.1 MD06G1212600.v1.1 MD06G1212700.v1.1 MD13G1126800.v1.1 MD14G1168300.v1.1 MD14G1206600.v1.1 MD14G1223900.v1.1 MD14G1230800.v1.1 MD15G1240300.v1.1 MD15G1416800.v1.1 MD16G1127300.v1.1
prunus_persica Prupe.1G218700_v2.0.a1 Prupe.4G045100_v2.0.a1 Prupe.5G159300_v2.0.a1 Prupe.5G172200_v2.0.a1 Prupe.5G172300_v2.0.a1 Prupe.5G173200_v2.0.a1 Prupe.5G173300_v2.0.a1 Prupe.5G173400_v2.0.a1 Prupe.5G219000_v2.0.a1 Prupe.5G219100_v2.0.a1 Prupe.5G219200_v2.0.a1
pyrus_communis pycom05g24390 pycom06g19020 pycom10g15060 pycom10g24800 pycom13g11010 pycom16g10800 pycom16g10810 pycom17g22350 pycom17g22360
rosa_chinensis RchiOBHm_Chr2g0136111 RchiOBHm_Chr4g0429291 RchiOBHm_Chr7g0184981 RchiOBHm_Chr7g0184991 RchiOBHm_Chr7g0185001 RchiOBHm_Chr7g0204841
rosa_laevigata RLG00000003427 RLG00000004941 RLG00000004943 RLG00000004944 RLG00000004945 RLG00000004946 RLG00000007084 RLG00000013701 RLG00000019505 RLG00000019506
rosa_multiflora Rmu_co8294559.1_g000001 Rmu_co8375195.1_g000001 Rmu_co8450783.1_g000001 Rmu_co8519567.1_g000001 Rmu_sc0000054.1_g000008 Rmu_sc0001689.1_g000017 Rmu_sc0001801.1_g000027 Rmu_sc0002070.1_g000010 Rmu_sc0002180.1_g000022 Rmu_sc0002986.1_g000018 Rmu_sc0003221.1_g000027 Rmu_sc0005629.1_g000018 Rmu_sc0009898.1_g000002 Rmu_sc0018428.1_g000003 Rmu_sc0018428.1_g000005 Rmu_sc0022816.1_g000001 Rmu_sc0041781.1_g000001 Rmu_ssc0000289.1_g000007 Rmu_ssc0000289.1_g000008 Rmu_ssc0000289.1_g000010
rosa_roxburghii Rroxscaffold_2G00108460 Rroxscaffold_3G00252720 Rroxscaffold_3G00269290 Rroxscaffold_5G00349680 Rroxscaffold_5G00370900 Rroxscaffold_6G00415020
rosa_rugosa Rorug01G0043400 Rorug02G0328200 Rorug04G0234800 Rorug06G0465600 Rorug06G0465800 Rorug06G0465900 Rorug06G0466000 Rorug06G0466100 Rorug07G0086200 Rorug07G0086200
rosa_samantha Rh2BG386700 Rh2CG365900 Rh2DG402800 Rh4AG290400 Rh4BG296100 Rh4CG311900 Rh4DG293300 Rh7AG077000 Rh7AG077100 Rh7AG077200 Rh7AG216600 Rh7BG070200 Rh7BG070300 Rh7BG070400 Rh7BG213700 Rh7CG071400 Rh7CG071600 Rh7CG071700 Rh7CG071900 Rh7CG230100 Rh7DG070800 Rh7DG070900 Rh7DG224200 Rh7DG440100
rosa_wichuraiana Rw2G030970 Rw4G025150 Rw7G005840 Rw7G005850 Rw7G005860 Rw7G018770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 246
AciI CCGC 5 cut(s) 28, 47, 244, 246, 293
AclWI GGATC 1 cut(s) 321
AfaI GTAC 1 cut(s) 153
AgsI TTSAA 2 cut(s) 84, 98
AleI CACNNNNGTG 1 cut(s) 293
AluBI AGCT 3 cut(s) 22, 187, 229
AluI AGCT 3 cut(s) 22, 187, 229
Alw21I GWGCWC 2 cut(s) 255, 300
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 1 cut(s) 321
AoxI GGCC 1 cut(s) 201
ApaI GGGCCC 1 cut(s) 205
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 184
AspS9I GGNCC 2 cut(s) 201, 202
BaeGI GKGCMC 2 cut(s) 205, 255
BanII GRGCYC 1 cut(s) 205
Bbv12I GWGCWC 2 cut(s) 255, 300
BbvI GCAGC 1 cut(s) 196
BceAI ACGGC 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 301
BisI GCNGC 2 cut(s) 185, 247
BlsI GCNGC 2 cut(s) 186, 248
BmgT120I GGNCC 2 cut(s) 201, 202
BmiI GGNNCC 1 cut(s) 203
BmsI GCATC 2 cut(s) 176, 199
BpmI CTGGAG 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 68, 244
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bse1I ACTGG 1 cut(s) 265
BseDI CCNNGG 2 cut(s) 68, 244
BseGI GGATG 2 cut(s) 13, 167
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 2 cut(s) 19, 103
BseSI GKGCMC 2 cut(s) 205, 255
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 1 cut(s) 203
BsiHKAI GWGCWC 2 cut(s) 255, 300
BsnI GGCC 1 cut(s) 203
Bsp120I GGGCCC 1 cut(s) 201
Bsp1286I GDGCHC 3 cut(s) 205, 255, 300
Bsp143I GATC 3 cut(s) 8, 133, 313
Bsp19I CCATGG 1 cut(s) 68
BspACI CCGC 5 cut(s) 28, 47, 244, 246, 293
BspANI GGCC 1 cut(s) 203
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 203
BspPI GGATC 1 cut(s) 321
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 68, 244
BssMI GATC 3 cut(s) 8, 133, 313
BssT1I CCWWGG 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 317
BstDSI CCRYGG 2 cut(s) 68, 244
BstF5I GGATG 2 cut(s) 13, 167
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 3 cut(s) 11, 136, 316
BstMBI GATC 3 cut(s) 8, 133, 313
BstMWI GCNNNNNNNGC 3 cut(s) 209, 243, 255
BstSFI CTRYAG 1 cut(s) 301
BstSLI GKGCMC 2 cut(s) 205, 255
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BsuRI GGCC 1 cut(s) 203
BtgI CCRYGG 2 cut(s) 68, 244
BtsCI GGATG 2 cut(s) 13, 167
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 251
Cfr13I GGNCC 2 cut(s) 201, 202
Cfr42I CCGCGG 1 cut(s) 247
Csp6I GTAC 1 cut(s) 152
CviAII CATG 3 cut(s) 69, 146, 206
CviJI RGCY 6 cut(s) 22, 90, 187, 203, 229, 268
CviKI_1 RGCY 6 cut(s) 22, 90, 187, 203, 229, 268
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 317
DpnI GATC 3 cut(s) 10, 135, 315
DpnII GATC 3 cut(s) 8, 133, 313
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
EciI GGCGGA 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 205
ErhI CCWWGG 1 cut(s) 68
FaeI CATG 3 cut(s) 72, 149, 209
FaiI YATR 3 cut(s) 70, 147, 207
FatI CATG 3 cut(s) 68, 145, 205
Fnu4HI GCNGC 2 cut(s) 185, 247
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 1 cut(s) 205
Fsp4HI GCNGC 2 cut(s) 185, 247
GluI GCNGC 2 cut(s) 185, 247
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 1 cut(s) 203
Hin1II CATG 3 cut(s) 72, 149, 209
HinfI GANTC 1 cut(s) 282
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 2 cut(s) 66, 272
HpyCH4V TGCA 2 cut(s) 237, 253
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 243, 255
HpyF3I CTNAG 1 cut(s) 317
Hsp92II CATG 3 cut(s) 72, 149, 209
KspI CCGCGG 1 cut(s) 247
Kzo9I GATC 3 cut(s) 8, 133, 313
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 3 cut(s) 177, 194, 246
Lsp1109I GCAGC 1 cut(s) 196
LweI GCATC 2 cut(s) 176, 199
MalI GATC 3 cut(s) 10, 135, 315
MboI GATC 3 cut(s) 8, 133, 313
MboII GAAGA 2 cut(s) 130, 133
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 3 cut(s) 205, 255, 300
MluCI AATT 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 6 cut(s) 119, 124, 140, 201, 233, 251
MseI TTAA 1 cut(s) 215
MslI CAYNNNNRTG 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 246
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 3 cut(s) 209, 243, 255
NcoI CCATGG 1 cut(s) 68
NdeII GATC 3 cut(s) 8, 133, 313
NlaIII CATG 3 cut(s) 72, 149, 209
NlaIV GGNNCC 1 cut(s) 203
OliI CACNNNNGTG 1 cut(s) 293
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 2 cut(s) 186, 248
PspN4I GGNNCC 1 cut(s) 203
PspOMI GGGCCC 1 cut(s) 201
PspPI GGNCC 2 cut(s) 201, 202
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 293
SacII CCGCGG 1 cut(s) 247
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 2 cut(s) 185, 247
Sau3AI GATC 3 cut(s) 8, 133, 313
Sau96I GGNCC 2 cut(s) 201, 202
SduI GDGCHC 3 cut(s) 205, 255, 300
SetI ASST 6 cut(s) 24, 111, 126, 189, 231, 243
SfaNI GCATC 2 cut(s) 176, 199
SfcI CTRYAG 1 cut(s) 301
Sfr303I CCGCGG 1 cut(s) 247
SgrBI CCGCGG 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 1 cut(s) 63
SsiI CCGC 5 cut(s) 28, 47, 244, 246, 293
StyI CCWWGG 1 cut(s) 68
TaqI TCGA 1 cut(s) 132
TasI AATT 1 cut(s) 63
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TscAI CASTG 1 cut(s) 265
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 48
TspRI CASTG 1 cut(s) 265
VneI GTGCAC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.