Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003842

Physical Location & Seq

Genomic Coordinates Forward (+)

20011371 .. 20012145

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26522.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGAAAAGCATGGTTCCTGCTAACCAAACTGCACTCACTTGCTTGGCCTGGGTTGACGTTGGCTTACCCCTTGTACGCTTCATTGATGGCCATGGAGGGCGGCGACACATCGAAACCAGACGTTCAGCAGTGGCTTGCTTATTGGATCATGTACGCTTTACTCTCTCCATTGGAGATGCTTCTCCAACCCCTTTTACAATGGATACCATTTTGGTACGACTTGAAGCTTGTGTTTGTGGCATGGTTGGTTCTACCACAGTTCGGAGGAGCATGTTTCTTGTATGAGAAATTTGTGAGAGACCATGCACTTAGGCTTGTAGGTCGCAGAGACCATCCGAGACATCAAGCAGCAATCTTGGAACCATCACAACCCCTACGAAGGGGCATGCCTAATGCTCGAAACACAAGCACTCATGATCAATCCGACAGAGACAGTCGTCGGGACACATTTACTCGTCAATCGGACACGGTCAATGTTCAGGACAGAGAAGAAGAACATAACTTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

171

Amino Acids

19.85

Weight (kDa)

7.02

Isoelectric Point (pI)

61.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	24 - 100	3.1e-25	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19910 AT5G19910
fragaria_vesca	FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530
malus_domestica	MD01G1174300.v1.1 MD07G1241000.v1.1
prunus_persica	Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1
pyrus_communis	pycom01g18600 pycom07g21720
rosa_chinensis	RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201
rosa_laevigata	RLG00000026844
rosa_multiflora	Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013
rosa_rugosa	Rorug01G0376700 Rorug01G0376700 Rorug01G0376700
rosa_samantha	Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100
rosa_wichuraiana	Rw1G033970 Rw1G033980 Rw7G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	3 cut(s)	77, 155, 218
AfiI	CCNNNNNNNGG	3 cut(s)	263, 381, 382
AgsI	TTSAA	2 cut(s)	226, 508
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw26I	GTCTC	4 cut(s)	294, 324, 334, 426
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	2 cut(s)	47, 90
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	3 cut(s)	82, 342, 373
BciT130I	CCWGG	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	198
BclI	TGATCA	1 cut(s)	418
BcoDI	GTCTC	4 cut(s)	294, 324, 334, 426
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	2 cut(s)	103, 351
BlsI	GCNGC	2 cut(s)	104, 352
Bme1390I	CCNGG	1 cut(s)	51
BmiI	GGNNCC	2 cut(s)	17, 363
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	1 cut(s)	168
BoxI	GACNNNNGTC	1 cut(s)	438
BsaI	GGTCTC	2 cut(s)	294, 324
BsaJI	CCNNGG	2 cut(s)	50, 93
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 381, 382
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	50, 93
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	3 cut(s)	263, 381, 382
BseRI	GAGGAG	1 cut(s)	282
BseXI	GCAGC	1 cut(s)	362
BsgI	GTGCAG	1 cut(s)	17
BshFI	GGCC	2 cut(s)	49, 92
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	3 cut(s)	263, 381, 382
BsmAI	GTCTC	4 cut(s)	294, 324, 334, 426
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	2 cut(s)	49, 92
Bso31I	GGTCTC	2 cut(s)	294, 324
Bsp143I	GATC	2 cut(s)	147, 418
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	2 cut(s)	49, 92
BspHI	TCATGA	1 cut(s)	415
BspLI	GGNNCC	2 cut(s)	17, 363
BspPI	GGATC	1 cut(s)	155
BspTNI	GGTCTC	2 cut(s)	294, 324
BssECI	CCNNGG	2 cut(s)	50, 93
BssMI	GATC	2 cut(s)	147, 418
BssT1I	CCWWGG	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	3 cut(s)	261, 437, 472
BstC8I	GCNNGC	2 cut(s)	138, 389
BstDEI	CTNAG	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	2 cut(s)	150, 421
BstMAI	GTCTC	4 cut(s)	294, 324, 334, 426
BstMBI	GATC	2 cut(s)	147, 418
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	2 cut(s)	276, 391
BstPAI	GACNNNNGTC	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	362
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	49, 92
BtgI	CCRYGG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	138, 389
CciI	TCATGA	1 cut(s)	415
Csp6I	GTAC	3 cut(s)	76, 154, 217
CviAII	CATG	8 cut(s)	12, 94, 151, 243, 273, 305, 388, 416
CviJI	RGCY	6 cut(s)	49, 65, 92, 136, 229, 316
CviKI_1	RGCY	6 cut(s)	49, 65, 92, 136, 229, 316
CviQI	GTAC	3 cut(s)	76, 154, 217
DdeI	CTNAG	1 cut(s)	311
DpnI	GATC	2 cut(s)	149, 420
DpnII	GATC	2 cut(s)	147, 418
EaeI	YGGCCR	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	93
Eco31I	GGTCTC	2 cut(s)	294, 324
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	8 cut(s)	15, 97, 154, 246, 276, 308, 391, 419
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	8 cut(s)	11, 93, 150, 242, 272, 304, 387, 415
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	103, 351
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	2 cut(s)	103, 351
GluI	GCNGC	2 cut(s)	103, 351
HaeIII	GGCC	2 cut(s)	49, 92
Hin1II	CATG	8 cut(s)	15, 97, 154, 246, 276, 308, 391, 419
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HindIII	AAGCTT	1 cut(s)	227
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	4 cut(s)	266, 339, 427, 466
Hpy188III	TCNNGA	3 cut(s)	416, 443, 482
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	1 cut(s)	444
HpyAV	CCTTC	1 cut(s)	375
HpyCH4III	ACNGT	3 cut(s)	261, 437, 472
HpyCH4IV	ACGT	2 cut(s)	59, 123
HpyCH4V	TGCA	2 cut(s)	34, 308
HpyF3I	CTNAG	1 cut(s)	311
HpySE526I	ACGT	2 cut(s)	59, 123
Hsp92II	CATG	8 cut(s)	15, 97, 154, 246, 276, 308, 391, 419
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	147, 418
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	5 cut(s)	32, 36, 63, 132, 467
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	168
MaeII	ACGT	2 cut(s)	59, 123
MalI	GATC	2 cut(s)	149, 420
MboI	GATC	2 cut(s)	147, 418
MboII	GAAGA	2 cut(s)	503, 506
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	2 cut(s)	290, 508
MluNI	TGGCCA	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	211, 450
MnlI	CCTC	2 cut(s)	91, 260
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	147, 418
NlaIII	CATG	8 cut(s)	15, 97, 154, 246, 276, 308, 391, 419
NlaIV	GGNNCC	2 cut(s)	17, 363
NspI	RCATGY	2 cut(s)	276, 391
PaeI	GCATGC	1 cut(s)	391
PagI	TCATGA	1 cut(s)	415
PflFI	GACNNNGTC	1 cut(s)	470
PkrI	GCNGC	2 cut(s)	104, 352
PshAI	GACNNNNGTC	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	17, 363
PsyI	GACNNNGTC	1 cut(s)	470
RsaI	GTAC	3 cut(s)	77, 155, 218
RsaNI	GTAC	3 cut(s)	76, 154, 217
SatI	GCNGC	2 cut(s)	103, 351
Sau3AI	GATC	2 cut(s)	147, 418
ScrFI	CCNGG	1 cut(s)	51
SetI	ASST	4 cut(s)	62, 126, 231, 325
SfaNI	GCATC	1 cut(s)	168
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	2 cut(s)	290, 508
SsiI	CCGC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	3 cut(s)	261, 437, 472
TaiI	ACGT	2 cut(s)	62, 126
TaqI	TCGA	2 cut(s)	113, 400
TasI	AATT	2 cut(s)	290, 508
TauI	GCSGC	1 cut(s)	105
TscAI	CASTG	1 cut(s)	137
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	137
Tth111I	GACNNNGTC	1 cut(s)	470
XapI	RAATTY	1 cut(s)	290
XceI	RCATGY	2 cut(s)	276, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.