Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003842

Physical Location & Seq

Genomic Coordinates Reverse (-)

6479400 .. 6483694

Gene Structure 4295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026844

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGGAAAAGCATGGTTCTTGCTTACCAAACTGCACTCCCTTGCTTGGCCTGGATTGACGTTGGCTTACCCTTTATACGCATCAATGATGGCCATGGAGGGCGGCGACACATCGAAACCAGACGTTCAGCAGTGGCTTGCTTATTGGATCATGTACGCTTTACTCTCTCCGTTGGAGATGATTCTCCAACCCCTTTTACAATGGATACCGTTCTGGTACGACGTGAAGCTTGTGTTGGTGGCATGGTTAGTTCTACCACAGTTCGGAGGGGCATGTTTCTTGTATGAGAAATATGTGAGAGACCATGCCCTTAGGCTTATAGGTCGCAAAGACCATCCGAGACATCATCAAGTAGCAACCTCGAGACCATTTCAACCCGCACCAAGAATTATGCCCAATGCTGGGGACACGAGTACCCATCGGTCCAACACACCCAATGCTCAGGAGGCGAGTACTCATCAATCTAACACACCCAATGCTCGGGACAAAAGTACTCATCCGTCCAACATACCCAATGCTCATCAGTCCATCACGGCCAATGTTCGGAACACGCGTACTCATCCGTCCAACACAGCTAATGCTCGATACACAAGTACTCGTGTTGGGCGGATGTCCTCAACTGGCGGAGGAGAGAACAGGGTAAGAGACTGGTCACAGCGATATCTTTCAGTTCAGAGAAGAAGAAGAAGGGTTCTAATGGCGTCTGGCACAGAGAGTGATGAAGCCTCCGACACTCCAGAAATTTACAAAGACCCAGATGATGGGAGGCAGCGATTCTTGCTTGAATTGGAGTTCATCCAATGTCTCGCAAATCCCACTTACATTCACTATTTGGCTCAGAATCGGTACTTTGAAGATGAAGCCTTCATTGGGTACTTGAAATATCTTCAGTATTGGCAGCGTCCTGAGTACACCAAATTCATAATGTACCCTCATTGCTTGTTTTTCCTTGAGCAACTCCAAAATGCAAACTTTCGCAATGCAATGGCACATCCTGCCAACAAGGAATTGGCACATAGGCAGCAATTCTACTTCTGGAAGAACTATAGGCACAACCGTTTGAAACACATATTACCGAGACCTCTTCCTGAACCTGAAGCTGCACCCCCCGCCTCTGCTCTGCCTCAGCAATCTCTGCCTCCTGTTCCACCTGTGCCAGCTGCAACCATTTCTGCTGCAGCTACTGCTCCTGCCCTTCCCTCTATGCAGTATGCTAACGCCCCTGGATCTGCTCTTGCAAAGAACGATGCAAGGAATAGTGCTGTTGATCGAAGAAAGAGAAAGAGAATTGTCAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:0140110 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med31

Protein Analysis

434

Amino Acids

49.63

Weight (kDa)

9.82

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	24 - 100	1.1e-23	TB2/DP1, HVA22 family
Med31	PF05669	257 - 349	4.6e-34	SOH1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19910 AT5G19910
fragaria_vesca	FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530
malus_domestica	MD01G1174300.v1.1 MD07G1241000.v1.1
prunus_persica	Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1
pyrus_communis	pycom01g18600 pycom07g21720
rosa_chinensis	RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201
rosa_laevigata	RLG00000026844
rosa_multiflora	Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013
rosa_rugosa	Rorug01G0376700 Rorug01G0376700 Rorug01G0376700
rosa_samantha	Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100
rosa_wichuraiana	Rw1G033970 Rw1G033980 Rw7G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	761
AccII	CGCG	1 cut(s)	553
AciI	CCGC	5 cut(s)	102, 378, 607, 624, 1110
AclWI	GGATC	2 cut(s)	155, 1234
AcoI	YGGCCR	2 cut(s)	90, 534
AcsI	RAATTY	2 cut(s)	741, 917
AcuI	CTGAAG	2 cut(s)	872, 1116
AcyI	GRCGYC	1 cut(s)	701
AfiI	CCNNNNNNNGG	8 cut(s)	45, 263, 401, 402, 480, 543, 761, 870
AflIII	ACRYGT	1 cut(s)	551
AgsI	TTSAA	5 cut(s)	374, 785, 854, 880, 1063
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	49, 1222
AjuI	GAANNNNNNNTTGG	4 cut(s)	218, 250, 852, 884
AluBI	AGCT	5 cut(s)	229, 575, 1100, 1160, 1181
AluI	AGCT	5 cut(s)	229, 575, 1100, 1160, 1181
Alw26I	GTCTC	6 cut(s)	294, 334, 358, 639, 809, 1072
AlwI	GGATC	2 cut(s)	155, 1234
AlwNI	CAGNNNCTG	1 cut(s)	1184
Ama87I	CYCGRG	2 cut(s)	361, 480
AoxI	GGCC	3 cut(s)	47, 90, 534
ApeKI	GCWGC	7 cut(s)	769, 898, 1021, 1100, 1160, 1175, 1178
ApoI	RAATTY	2 cut(s)	741, 917
AspS9I	GGNCC	1 cut(s)	423
AvaI	CYCGRG	2 cut(s)	361, 480
AvaII	GGWCC	1 cut(s)	423
AxyI	CCTNAGG	1 cut(s)	311
BaeI	ACNNNNGTAYC	4 cut(s)	397, 430, 577, 610
BalI	TGGCCA	1 cut(s)	92
BauI	CACGAG	2 cut(s)	409, 597
BbvCI	CCTCAGC	1 cut(s)	1125
BbvI	GCAGC	7 cut(s)	781, 910, 1033, 1087, 1147, 1162, 1190
BccI	CCATC	5 cut(s)	82, 342, 426, 536, 755
BceAI	ACGGC	1 cut(s)	549
BciT130I	CCWGG	2 cut(s)	51, 1224
BciVI	GTATCC	1 cut(s)	198
BcoDI	GTCTC	6 cut(s)	294, 334, 358, 639, 809, 1072
BfmI	CTRYAG	2 cut(s)	1045, 1176
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	8 cut(s)	103, 770, 899, 1022, 1101, 1161, 1176, 1179
BlsI	GCNGC	8 cut(s)	104, 771, 900, 1023, 1102, 1162, 1177, 1180
BmcAI	AGTACT	3 cut(s)	454, 493, 595
Bme1390I	CCNGG	2 cut(s)	51, 1224
Bme18I	GGWCC	1 cut(s)	423
BmeT110I	CYCGRG	2 cut(s)	361, 480
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	423
BmrFI	CCNGG	2 cut(s)	51, 1224
BmsI	GCATC	2 cut(s)	89, 1237
BpmI	CTGGAG	1 cut(s)	720
Bpu10I	CCTNAGC	2 cut(s)	441, 1125
BpuEI	CTTGAG	1 cut(s)	971
BsaHI	GRCGYC	1 cut(s)	701
BsaI	GGTCTC	3 cut(s)	294, 358, 1072
BsaJI	CCNNGG	2 cut(s)	93, 1222
Bsc4I	CCNNNNNNNGG	8 cut(s)	45, 263, 401, 402, 480, 543, 761, 870
Bse1I	ACTGG	2 cut(s)	625, 653
Bse21I	CCTNAGG	1 cut(s)	311
Bse3DI	GCAATG	3 cut(s)	934, 985, 990
BseBI	CCWGG	2 cut(s)	51, 1224
BseDI	CCNNGG	2 cut(s)	93, 1222
BseGI	GGATG	6 cut(s)	334, 496, 559, 615, 795, 991
BseLI	CCNNNNNNNGG	8 cut(s)	45, 263, 401, 402, 480, 543, 761, 870
BseMI	GCAATG	3 cut(s)	934, 985, 990
BseMII	CTCAG	4 cut(s)	455, 851, 897, 1139
BseNI	ACTGG	2 cut(s)	625, 653
BseRI	GAGGAG	1 cut(s)	642
BseXI	GCAGC	7 cut(s)	781, 910, 1033, 1087, 1147, 1162, 1190
BseYI	CCCAGC	1 cut(s)	401
BsgI	GTGCAG	2 cut(s)	17, 1086
Bsh1236I	CGCG	1 cut(s)	553
BshFI	GGCC	3 cut(s)	49, 92, 536
BsiHKCI	CYCGRG	2 cut(s)	361, 480
BslFI	GGGAC	2 cut(s)	419, 497
BslI	CCNNNNNNNGG	8 cut(s)	45, 263, 401, 402, 480, 543, 761, 870
BsmAI	GTCTC	6 cut(s)	294, 334, 358, 639, 809, 1072
BsmFI	GGGAC	2 cut(s)	419, 497
BsnI	GGCC	3 cut(s)	49, 92, 536
Bso31I	GGTCTC	3 cut(s)	294, 358, 1072
BsoBI	CYCGRG	2 cut(s)	361, 480
Bsp143I	GATC	3 cut(s)	147, 1226, 1267
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	5 cut(s)	102, 378, 607, 624, 1110
BspANI	GGCC	3 cut(s)	49, 92, 536
BspCNI	CTCAG	4 cut(s)	454, 850, 898, 1138
BspFNI	CGCG	1 cut(s)	553
BspMAI	CTGCAG	1 cut(s)	1180
BspPI	GGATC	2 cut(s)	155, 1234
BspTNI	GGTCTC	3 cut(s)	294, 358, 1072
BsrDI	GCAATG	3 cut(s)	934, 985, 990
BsrI	ACTGG	2 cut(s)	625, 653
BssECI	CCNNGG	2 cut(s)	93, 1222
BssMI	GATC	3 cut(s)	147, 1226, 1267
BssNI	GRCGYC	1 cut(s)	701
BssSI	CACGAG	2 cut(s)	409, 597
BssT1I	CCWWGG	1 cut(s)	93
Bst2BI	CACGAG	2 cut(s)	409, 597
Bst2UI	CCWGG	2 cut(s)	51, 1224
Bst4CI	ACNGT	3 cut(s)	210, 261, 1058
Bst6I	CTCTTC	1 cut(s)	1089
BstACI	GRCGYC	1 cut(s)	701
BstAPI	GCANNNNNTGC	3 cut(s)	995, 1135, 1184
BstC8I	GCNNGC	2 cut(s)	138, 1158
BstDEI	CTNAG	5 cut(s)	311, 441, 837, 906, 1125
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	6 cut(s)	334, 496, 559, 615, 795, 991
BstFNI	CGCG	1 cut(s)	553
BstKTI	GATC	3 cut(s)	150, 1229, 1270
BstMAI	GTCTC	6 cut(s)	294, 334, 358, 639, 809, 1072
BstMBI	GATC	3 cut(s)	147, 1226, 1267
BstMWI	GCNNNNNNNGC	6 cut(s)	446, 778, 995, 1109, 1135, 1184
BstNI	CCWGG	2 cut(s)	51, 1224
BstNSI	RCATGY	1 cut(s)	276
BstSCI	CCNGG	2 cut(s)	49, 1222
BstSFI	CTRYAG	2 cut(s)	1045, 1176
BstUI	CGCG	1 cut(s)	553
BstV1I	GCAGC	7 cut(s)	781, 910, 1033, 1087, 1147, 1162, 1190
BstX2I	RGATCY	1 cut(s)	1226
BstYI	RGATCY	1 cut(s)	1226
Bsu36I	CCTNAGG	1 cut(s)	311
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	3 cut(s)	49, 92, 536
BtgI	CCRYGG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	6 cut(s)	334, 496, 559, 615, 795, 991
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	2 cut(s)	138, 1158
CaiI	CAGNNNCTG	1 cut(s)	1184
Cfr13I	GGNCC	1 cut(s)	423
CseI	GACGC	2 cut(s)	690, 890
CviAII	CATG	6 cut(s)	12, 94, 151, 243, 273, 305
DdeI	CTNAG	5 cut(s)	311, 441, 837, 906, 1125
DpnI	GATC	3 cut(s)	149, 1228, 1269
DpnII	GATC	3 cut(s)	147, 1226, 1267
EaeI	YGGCCR	2 cut(s)	90, 534
Eam1104I	CTCTTC	1 cut(s)	1089
EarI	CTCTTC	1 cut(s)	1089
EciI	GGCGGA	2 cut(s)	622, 639
Eco130I	CCWWGG	1 cut(s)	93
Eco31I	GGTCTC	3 cut(s)	294, 358, 1072
Eco32I	GATATC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	423
Eco57I	CTGAAG	2 cut(s)	872, 1116
Eco81I	CCTNAGG	1 cut(s)	311
Eco88I	CYCGRG	2 cut(s)	361, 480
EcoRII	CCWGG	2 cut(s)	49, 1222
EcoRV	GATATC	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	6 cut(s)	15, 97, 154, 246, 276, 308
FaqI	GGGAC	2 cut(s)	419, 497
FatI	CATG	6 cut(s)	11, 93, 150, 242, 272, 304
FauI	CCCGC	2 cut(s)	385, 1117
Fnu4HI	GCNGC	8 cut(s)	103, 770, 899, 1022, 1101, 1161, 1176, 1179
FokI	GGATG	6 cut(s)	321, 483, 546, 622, 782, 978
Fsp4HI	GCNGC	8 cut(s)	103, 770, 899, 1022, 1101, 1161, 1176, 1179
GluI	GCNGC	8 cut(s)	103, 770, 899, 1022, 1101, 1161, 1176, 1179
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	720
HaeIII	GGCC	3 cut(s)	49, 92, 536
HgaI	GACGC	2 cut(s)	690, 890
Hin1I	GRCGYC	1 cut(s)	701
Hin1II	CATG	6 cut(s)	15, 97, 154, 246, 276, 308
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	3 cut(s)	181, 774, 841
Hpy166II	GTNNAC	1 cut(s)	912
Hpy188I	TCNGA	6 cut(s)	266, 339, 546, 675, 730, 840
Hpy188III	TCNNGA	8 cut(s)	363, 443, 482, 737, 905, 1036, 1088, 1294
Hpy8I	GTNNAC	1 cut(s)	912
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	3 cut(s)	681, 874, 1205
HpyCH4III	ACNGT	3 cut(s)	210, 261, 1058
HpyCH4IV	ACGT	3 cut(s)	59, 123, 222
HpyCH4V	TGCA	9 cut(s)	34, 968, 983, 1103, 1163, 1178, 1207, 1238, 1250
HpyF10VI	GCNNNNNNNGC	6 cut(s)	446, 778, 995, 1109, 1135, 1184
HpyF3I	CTNAG	5 cut(s)	311, 441, 837, 906, 1125
HpySE526I	ACGT	3 cut(s)	59, 123, 222
Hsp92I	GRCGYC	1 cut(s)	701
Hsp92II	CATG	6 cut(s)	15, 97, 154, 246, 276, 308
Kzo9I	GATC	3 cut(s)	147, 1226, 1267
LmnI	GCTCC	1 cut(s)	1192
Lsp1109I	GCAGC	7 cut(s)	781, 910, 1033, 1087, 1147, 1162, 1190
LweI	GCATC	2 cut(s)	89, 1237
MaeII	ACGT	3 cut(s)	59, 123, 222
MaeIII	GTNAC	1 cut(s)	651
MalI	GATC	3 cut(s)	149, 1228, 1269
MboI	GATC	3 cut(s)	147, 1226, 1267
MboII	GAAGA	8 cut(s)	690, 693, 696, 866, 878, 1051, 1076, 1284
MflI	RGATCY	1 cut(s)	1226
MlsI	TGGCCA	1 cut(s)	92
MluCI	AATT	7 cut(s)	387, 741, 785, 917, 1007, 1025, 1287
MluI	ACGCGT	1 cut(s)	551
MluNI	TGGCCA	1 cut(s)	92
MmeI	TCCRAC	6 cut(s)	153, 211, 450, 528, 591, 753
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	92
MspA1I	CMGCKG	1 cut(s)	1160
MspR9I	CCNGG	2 cut(s)	51, 1224
MvaI	CCWGG	2 cut(s)	51, 1224
MvnI	CGCG	1 cut(s)	553
MwoI	GCNNNNNNNGC	6 cut(s)	446, 778, 995, 1109, 1135, 1184
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	3 cut(s)	147, 1226, 1267
NlaIII	CATG	6 cut(s)	15, 97, 154, 246, 276, 308
NmuCI	GTSAC	1 cut(s)	651
NspI	RCATGY	1 cut(s)	276
PaeR7I	CTCGAG	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	550
PfeI	GAWTC	3 cut(s)	181, 774, 841
PflMI	CCANNNNNTGG	1 cut(s)	761
PkrI	GCNGC	8 cut(s)	104, 771, 900, 1023, 1102, 1162, 1177, 1180
Psp6I	CCWGG	2 cut(s)	49, 1222
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	2 cut(s)	49, 1222
PspPI	GGNCC	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	1180
PstNI	CAGNNNCTG	1 cut(s)	1184
PsuI	RGATCY	1 cut(s)	1226
PvuII	CAGCTG	1 cut(s)	1160
SatI	GCNGC	8 cut(s)	103, 770, 899, 1022, 1101, 1161, 1176, 1179
Sau3AI	GATC	3 cut(s)	147, 1226, 1267
Sau96I	GGNCC	1 cut(s)	423
ScaI	AGTACT	3 cut(s)	454, 493, 595
ScrFI	CCNGG	2 cut(s)	51, 1224
SfaNI	GCATC	2 cut(s)	89, 1237
SfcI	CTRYAG	2 cut(s)	1045, 1176
Sfr274I	CTCGAG	1 cut(s)	361
SinI	GGWCC	1 cut(s)	423
SlaI	CTCGAG	1 cut(s)	361
SmlI	CTYRAG	2 cut(s)	361, 950
SmoI	CTYRAG	2 cut(s)	361, 950
Sse9I	AATT	7 cut(s)	387, 741, 785, 917, 1007, 1025, 1287
SsiI	CCGC	5 cut(s)	102, 378, 607, 624, 1110
StyD4I	CCNGG	2 cut(s)	49, 1222
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	3 cut(s)	210, 261, 1058
TaiI	ACGT	3 cut(s)	62, 126, 225
TaqI	TCGA	4 cut(s)	113, 362, 583, 1270
TaqII	GACCGA	1 cut(s)	411
TasI	AATT	7 cut(s)	387, 741, 785, 917, 1007, 1025, 1287
TatI	WGTACW	4 cut(s)	452, 491, 593, 909
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	3 cut(s)	181, 774, 841
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	651
TseI	GCWGC	7 cut(s)	769, 898, 1021, 1100, 1160, 1175, 1178
Tsp45I	GTSAC	1 cut(s)	651
TspDTI	ATGAA	5 cut(s)	735, 784, 856, 873, 910
TspGWI	ACGGA	3 cut(s)	159, 489, 552
TspRI	CASTG	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	761
VpaK11BI	GGWCC	1 cut(s)	423
XapI	RAATTY	2 cut(s)	741, 917
XceI	RCATGY	1 cut(s)	276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1006
XhoI	CTCGAG	1 cut(s)	361
ZrmI	AGTACT	3 cut(s)	454, 493, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.