Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003842

Physical Location & Seq

Genomic Coordinates Forward (+)

60170391 .. 60171194

Gene Structure 804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG380000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGAAAAGCATGGTTCTTGCTTACCAAACTGCACTCCCTTGCTTGGCCTGGATTGACGTTGGCTTACCCTTTATACGCATCAATGATGGCCATGGAGGGCGGCGACACATCAGAGCTAGACGTTCAGCAGTGGCTTGCTTATTGGATCATGTACGCTTTACTCTCTCCGTTGGAGATGATTCTCCAACCCCTGTTACAATGGATACCGTTCTGGTACGACGTGAAGCTTGTGTTGGTGGCATGGTTAGTTCTACCACAGTTCGGAGGGGCACGTTTCTTGTATGAGAAATATGTGAGAGACCATGCCCTTAGGCTTATAGGTCGCAAAGACCATCCAAGACATCAAGTAGCAACCTCGAGACCATTTCAACCCGCACCAGGGATTTTGCCCAATGCTGGGGACACAAGGACTCATCGTTCCAACACGCCCAATGCTCAGGATGCAAGTTCTCATCAATCTTACAAACCCAATGCTCGGGACACAAGTACTCATCCGTCCAACACACCTAATGCTCGGGACGCGAGTACTCATCAGTCCAACACAGCCAATGTTCGGGACACGAGTACTCATCCGTCCAACACAGCTAATACTCGAGACACAAGTACTCGTGTTGGACGGATGTCCTCAACTGGCGGAGGAGAGAACAGGGTTGTGCATAAGCTGGGAAAACTTAGGTCAACTTGGAGGAATCTTGCTCGTCGTCACACGAGGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009555 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009892 GO:0009894 GO:0009895 GO:0009908 GO:0010033 GO:0010035 GO:0010506 GO:0010507 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042538 GO:0048229 GO:0048367 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0061458 GO:0065007 GO:0090567 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

239

Amino Acids

26.98

Weight (kDa)

10.29

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	24 - 100	1.3e-24	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19910 AT5G19910
fragaria_vesca	FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530
malus_domestica	MD01G1174300.v1.1 MD07G1241000.v1.1
prunus_persica	Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1
pyrus_communis	pycom01g18600 pycom07g21720
rosa_chinensis	RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201
rosa_laevigata	RLG00000026844
rosa_multiflora	Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013
rosa_rugosa	Rorug01G0376700 Rorug01G0376700 Rorug01G0376700
rosa_samantha	Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100
rosa_wichuraiana	Rw1G033970 Rw1G033980 Rw7G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	524
AciI	CCGC	3 cut(s)	102, 375, 636
AclWI	GGATC	1 cut(s)	155
AcoI	YGGCCR	1 cut(s)	90
AfaI	GTAC	6 cut(s)	155, 218, 490, 529, 568, 607
AfiI	CCNNNNNNNGG	8 cut(s)	45, 263, 380, 381, 398, 399, 477, 555
AgsI	TTSAA	1 cut(s)	371
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	2 cut(s)	49, 379
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AloI	GAACNNNNNNTCC	2 cut(s)	403, 435
AluBI	AGCT	4 cut(s)	118, 229, 587, 664
AluI	AGCT	4 cut(s)	118, 229, 587, 664
Alw26I	GTCTC	3 cut(s)	294, 355, 591
AlwI	GGATC	1 cut(s)	155
Ama87I	CYCGRG	4 cut(s)	358, 477, 516, 594
AoxI	GGCC	2 cut(s)	47, 90
AvaI	CYCGRG	4 cut(s)	358, 477, 516, 594
AxyI	CCTNAGG	1 cut(s)	311
BaeGI	GKGCMC	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	92
BauI	CACGAG	3 cut(s)	562, 609, 709
BccI	CCATC	2 cut(s)	82, 342
BciT130I	CCWGG	2 cut(s)	51, 381
BciVI	GTATCC	1 cut(s)	198
BcoDI	GTCTC	3 cut(s)	294, 355, 591
BfaI	CTAG	1 cut(s)	119
BfuI	GTATCC	1 cut(s)	198
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
BmcAI	AGTACT	4 cut(s)	490, 529, 568, 607
Bme1390I	CCNGG	2 cut(s)	51, 381
BmeT110I	CYCGRG	4 cut(s)	358, 477, 516, 594
BmgBI	CACGTC	1 cut(s)	223
BmrFI	CCNGG	2 cut(s)	51, 381
BmsI	GCATC	2 cut(s)	89, 433
BoxI	GACNNNNGTC	1 cut(s)	622
Bpu10I	CCTNAGC	1 cut(s)	438
BsaI	GGTCTC	2 cut(s)	294, 355
BsaJI	CCNNGG	2 cut(s)	93, 380
Bsc4I	CCNNNNNNNGG	8 cut(s)	45, 263, 380, 381, 398, 399, 477, 555
Bse1I	ACTGG	1 cut(s)	637
Bse21I	CCTNAGG	1 cut(s)	311
BseBI	CCWGG	2 cut(s)	51, 381
BseDI	CCNNGG	2 cut(s)	93, 380
BseGI	GGATG	5 cut(s)	334, 448, 493, 571, 627
BseLI	CCNNNNNNNGG	8 cut(s)	45, 263, 380, 381, 398, 399, 477, 555
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	637
BseRI	GAGGAG	1 cut(s)	654
BseSI	GKGCMC	1 cut(s)	274
BseYI	CCCAGC	2 cut(s)	398, 664
BsgI	GTGCAG	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	2 cut(s)	49, 92
BsiHKCI	CYCGRG	4 cut(s)	358, 477, 516, 594
BslFI	GGGAC	4 cut(s)	416, 494, 533, 572
BslI	CCNNNNNNNGG	8 cut(s)	45, 263, 380, 381, 398, 399, 477, 555
BsmAI	GTCTC	3 cut(s)	294, 355, 591
BsmFI	GGGAC	4 cut(s)	416, 494, 533, 572
BsnI	GGCC	2 cut(s)	49, 92
Bso31I	GGTCTC	2 cut(s)	294, 355
BsoBI	CYCGRG	4 cut(s)	358, 477, 516, 594
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	93
BspACI	CCGC	3 cut(s)	102, 375, 636
BspANI	GGCC	2 cut(s)	49, 92
BspCNI	CTCAG	1 cut(s)	451
BspFNI	CGCG	1 cut(s)	524
BspPI	GGATC	1 cut(s)	155
BspTNI	GGTCTC	2 cut(s)	294, 355
BsrI	ACTGG	1 cut(s)	637
BssECI	CCNNGG	2 cut(s)	93, 380
BssMI	GATC	1 cut(s)	147
BssSI	CACGAG	3 cut(s)	562, 609, 709
BssT1I	CCWWGG	1 cut(s)	93
Bst2BI	CACGAG	3 cut(s)	562, 609, 709
Bst2UI	CCWGG	2 cut(s)	51, 381
Bst4CI	ACNGT	2 cut(s)	210, 261
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	3 cut(s)	311, 438, 674
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	5 cut(s)	334, 448, 493, 571, 627
BstFNI	CGCG	1 cut(s)	524
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	3 cut(s)	294, 355, 591
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	2 cut(s)	443, 521
BstNI	CCWGG	2 cut(s)	51, 381
BstPAI	GACNNNNGTC	1 cut(s)	622
BstSCI	CCNGG	2 cut(s)	49, 379
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	524
Bsu36I	CCTNAGG	1 cut(s)	311
BsuI	GTATCC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	49, 92
BtgI	CCRYGG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	5 cut(s)	334, 448, 493, 571, 627
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	138
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	6 cut(s)	154, 217, 489, 528, 567, 606
CviAII	CATG	5 cut(s)	12, 94, 151, 243, 305
CviQI	GTAC	6 cut(s)	154, 217, 489, 528, 567, 606
DdeI	CTNAG	3 cut(s)	311, 438, 674
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
EaeI	YGGCCR	1 cut(s)	90
EciI	GGCGGA	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	93
Eco31I	GGTCTC	2 cut(s)	294, 355
Eco81I	CCTNAGG	1 cut(s)	311
Eco88I	CYCGRG	4 cut(s)	358, 477, 516, 594
EcoRII	CCWGG	2 cut(s)	49, 379
EcoT14I	CCWWGG	1 cut(s)	93
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	5 cut(s)	15, 97, 154, 246, 308
FaqI	GGGAC	4 cut(s)	416, 494, 533, 572
FatI	CATG	5 cut(s)	11, 93, 150, 242, 304
FauI	CCCGC	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	5 cut(s)	321, 455, 480, 558, 634
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	1 cut(s)	119
GluI	GCNGC	1 cut(s)	103
GsaI	CCCAGC	2 cut(s)	402, 668
HaeIII	GGCC	2 cut(s)	49, 92
HgaI	GACGC	1 cut(s)	530
Hin1II	CATG	5 cut(s)	15, 97, 154, 246, 308
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HindIII	AAGCTT	1 cut(s)	227
HinfI	GANTC	3 cut(s)	181, 412, 691
Hpy166II	GTNNAC	1 cut(s)	681
Hpy188I	TCNGA	2 cut(s)	115, 266
Hpy188III	TCNNGA	6 cut(s)	360, 440, 479, 518, 557, 596
Hpy8I	GTNNAC	1 cut(s)	681
Hpy99I	CGWCG	2 cut(s)	224, 705
HpyCH4III	ACNGT	2 cut(s)	210, 261
HpyCH4IV	ACGT	4 cut(s)	59, 123, 222, 274
HpyCH4V	TGCA	3 cut(s)	34, 446, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	443, 521
HpyF3I	CTNAG	3 cut(s)	311, 438, 674
HpySE526I	ACGT	4 cut(s)	59, 123, 222, 274
Hsp92II	CATG	5 cut(s)	15, 97, 154, 246, 308
Kzo9I	GATC	1 cut(s)	147
LweI	GCATC	2 cut(s)	89, 433
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	4 cut(s)	59, 123, 222, 274
MaeIII	GTNAC	2 cut(s)	195, 704
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	92
MlyI	GAGTC	1 cut(s)	406
MmeI	TCCRAC	7 cut(s)	153, 211, 447, 525, 564, 595, 603
MnlI	CCTC	7 cut(s)	91, 260, 367, 632, 637, 681, 705
Mox20I	TGGCCA	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	92
Msp20I	TGGCCA	1 cut(s)	92
MspR9I	CCNGG	2 cut(s)	51, 381
MvaI	CCWGG	2 cut(s)	51, 381
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	2 cut(s)	443, 521
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	5 cut(s)	15, 97, 154, 246, 308
NmuCI	GTSAC	1 cut(s)	704
PaeR7I	CTCGAG	2 cut(s)	358, 594
PfeI	GAWTC	2 cut(s)	181, 691
PkrI	GCNGC	1 cut(s)	104
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PshAI	GACNNNNGTC	1 cut(s)	622
Psp6I	CCWGG	2 cut(s)	49, 379
PspFI	CCCAGC	2 cut(s)	398, 664
PspGI	CCWGG	2 cut(s)	49, 379
RsaI	GTAC	6 cut(s)	155, 218, 490, 529, 568, 607
RsaNI	GTAC	6 cut(s)	154, 217, 489, 528, 567, 606
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	1 cut(s)	147
ScaI	AGTACT	4 cut(s)	490, 529, 568, 607
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	51, 381
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	2 cut(s)	89, 433
Sfr274I	CTCGAG	2 cut(s)	358, 594
SlaI	CTCGAG	2 cut(s)	358, 594
SmlI	CTYRAG	2 cut(s)	358, 594
SmoI	CTYRAG	2 cut(s)	358, 594
SsiI	CCGC	3 cut(s)	102, 375, 636
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	2 cut(s)	49, 379
StyI	CCWWGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	210, 261
TaiI	ACGT	4 cut(s)	62, 126, 225, 277
TaqI	TCGA	2 cut(s)	359, 595
TatI	WGTACW	4 cut(s)	488, 527, 566, 605
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	181, 691
TscAI	CASTG	1 cut(s)	137
TseFI	GTSAC	1 cut(s)	704
Tsp45I	GTSAC	1 cut(s)	704
TspGWI	ACGGA	4 cut(s)	159, 486, 564, 634
TspRI	CASTG	1 cut(s)	137
XhoI	CTCGAG	2 cut(s)	358, 594
XspI	CTAG	1 cut(s)	119
ZrmI	AGTACT	4 cut(s)	490, 529, 568, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.