Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G19910 AT5G19910 |
| fragaria_vesca | FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 |
| malus_domestica | MD01G1174300.v1.1 MD07G1241000.v1.1 |
| prunus_persica | Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 |
| pyrus_communis | pycom01g18600 pycom07g21720 |
| rosa_chinensis | RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201 |
| rosa_laevigata | RLG00000026844 |
| rosa_multiflora | Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013 |
| rosa_rugosa | Rorug01G0376700 Rorug01G0376700 Rorug01G0376700 |
| rosa_samantha | Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100 |
| rosa_wichuraiana | Rw1G033970 Rw1G033980 Rw7G030640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 239 |
| AccI | GTMKAC | 1 cut(s) | 227 |
| AclI | AACGTT | 1 cut(s) | 88 |
| AcoI | YGGCCR | 1 cut(s) | 79 |
| AcsI | RAATTY | 2 cut(s) | 107, 233 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 1 cut(s) | 191 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 77, 531 |
| AgsI | TTSAA | 6 cut(s) | 101, 170, 196, 206, 278, 379 |
| AjnI | CCWGG | 1 cut(s) | 529 |
| AluBI | AGCT | 1 cut(s) | 467 |
| AluI | AGCT | 1 cut(s) | 467 |
| Alw26I | GTCTC | 1 cut(s) | 388 |
| AoxI | GGCC | 3 cut(s) | 79, 150, 303 |
| ApeKI | GCWGC | 3 cut(s) | 214, 337, 416 |
| ApoI | RAATTY | 2 cut(s) | 107, 233 |
| AspS9I | GGNCC | 3 cut(s) | 67, 151, 304 |
| AsuHPI | GGTGA | 1 cut(s) | 493 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BbvCI | CCTCAGC | 1 cut(s) | 441 |
| BbvI | GCAGC | 3 cut(s) | 226, 349, 403 |
| BccI | CCATC | 1 cut(s) | 315 |
| BceAI | ACGGC | 1 cut(s) | 94 |
| BciT130I | CCWGG | 1 cut(s) | 531 |
| BciVI | GTATCC | 1 cut(s) | 255 |
| BcoDI | GTCTC | 1 cut(s) | 388 |
| BfmI | CTRYAG | 1 cut(s) | 361 |
| BfuI | GTATCC | 1 cut(s) | 255 |
| BisI | GCNGC | 3 cut(s) | 215, 338, 417 |
| BlsI | GCNGC | 3 cut(s) | 216, 339, 418 |
| Bme1390I | CCNGG | 1 cut(s) | 531 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 3 cut(s) | 67, 151, 304 |
| BmiI | GGNNCC | 1 cut(s) | 69 |
| BmrFI | CCNGG | 1 cut(s) | 531 |
| BpmI | CTGGAG | 1 cut(s) | 480 |
| Bpu10I | CCTNAGC | 1 cut(s) | 441 |
| BpuEI | CTTGAG | 1 cut(s) | 287 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 388 |
| BsaJI | CCNNGG | 2 cut(s) | 529, 530 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 418, 448 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 77, 531 |
| Bse3DI | GCAATG | 2 cut(s) | 250, 306 |
| BseBI | CCWGG | 1 cut(s) | 531 |
| BseDI | CCNNGG | 2 cut(s) | 529, 530 |
| BseGI | GGATG | 1 cut(s) | 307 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 77, 531 |
| BseMI | GCAATG | 2 cut(s) | 250, 306 |
| BseMII | CTCAG | 2 cut(s) | 213, 455 |
| BseX3I | CGGCCG | 1 cut(s) | 79 |
| BseXI | GCAGC | 3 cut(s) | 226, 349, 403 |
| BsgI | GTGCAG | 1 cut(s) | 402 |
| Bsh1285I | CGRYCG | 1 cut(s) | 82 |
| BshFI | GGCC | 3 cut(s) | 81, 152, 305 |
| BsiEI | CGRYCG | 1 cut(s) | 82 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 77, 531 |
| BsmAI | GTCTC | 1 cut(s) | 388 |
| BsnI | GGCC | 3 cut(s) | 81, 152, 305 |
| Bso31I | GGTCTC | 1 cut(s) | 388 |
| Bsp143I | GATC | 1 cut(s) | 574 |
| BspANI | GGCC | 3 cut(s) | 81, 152, 305 |
| BspCNI | CTCAG | 2 cut(s) | 214, 454 |
| BspLI | GGNNCC | 1 cut(s) | 69 |
| BspTNI | GGTCTC | 1 cut(s) | 388 |
| BsrDI | GCAATG | 2 cut(s) | 250, 306 |
| BssECI | CCNNGG | 2 cut(s) | 529, 530 |
| BssMI | GATC | 1 cut(s) | 574 |
| BssNAI | GTATAC | 1 cut(s) | 228 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| Bst1107I | GTATAC | 1 cut(s) | 228 |
| Bst2UI | CCWGG | 1 cut(s) | 531 |
| Bst4CI | ACNGT | 2 cut(s) | 374, 475 |
| Bst6I | CTCTTC | 1 cut(s) | 584 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 451 |
| BstC8I | GCNNGC | 1 cut(s) | 465 |
| BstDEI | CTNAG | 2 cut(s) | 222, 441 |
| BstF5I | GGATG | 1 cut(s) | 307 |
| BstKTI | GATC | 1 cut(s) | 577 |
| BstMAI | GTCTC | 1 cut(s) | 388 |
| BstMBI | GATC | 1 cut(s) | 574 |
| BstMCI | CGRYCG | 1 cut(s) | 82 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 451, 460 |
| BstNI | CCWGG | 1 cut(s) | 531 |
| BstSCI | CCNGG | 1 cut(s) | 529 |
| BstSFI | CTRYAG | 1 cut(s) | 361 |
| BstV1I | GCAGC | 3 cut(s) | 226, 349, 403 |
| BstZ17I | GTATAC | 1 cut(s) | 228 |
| BstZI | CGGCCG | 1 cut(s) | 79 |
| BsuI | GTATCC | 1 cut(s) | 255 |
| BsuRI | GGCC | 3 cut(s) | 81, 152, 305 |
| BtsCI | GGATG | 1 cut(s) | 307 |
| Cac8I | GCNNGC | 1 cut(s) | 465 |
| Cfr13I | GGNCC | 3 cut(s) | 67, 151, 304 |
| CseI | GACGC | 1 cut(s) | 206 |
| Csp6I | GTAC | 1 cut(s) | 190 |
| CviJI | RGCY | 7 cut(s) | 32, 81, 152, 179, 305, 467, 500 |
| CviKI_1 | RGCY | 7 cut(s) | 32, 81, 152, 179, 305, 467, 500 |
| CviQI | GTAC | 1 cut(s) | 190 |
| DdeI | CTNAG | 2 cut(s) | 222, 441 |
| DpnI | GATC | 1 cut(s) | 576 |
| DpnII | GATC | 1 cut(s) | 574 |
| EaeI | YGGCCR | 1 cut(s) | 79 |
| EagI | CGGCCG | 1 cut(s) | 79 |
| Eam1104I | CTCTTC | 1 cut(s) | 584 |
| EarI | CTCTTC | 1 cut(s) | 584 |
| EclXI | CGGCCG | 1 cut(s) | 79 |
| Eco31I | GGTCTC | 1 cut(s) | 388 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco52I | CGGCCG | 1 cut(s) | 79 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoRI | GAATTC | 1 cut(s) | 107 |
| EcoRII | CCWGG | 1 cut(s) | 529 |
| FblI | GTMKAC | 1 cut(s) | 227 |
| Fnu4HI | GCNGC | 3 cut(s) | 215, 338, 417 |
| FokI | GGATG | 1 cut(s) | 294 |
| Fsp4HI | GCNGC | 3 cut(s) | 215, 338, 417 |
| GluI | GCNGC | 3 cut(s) | 215, 338, 417 |
| GsuI | CTGGAG | 1 cut(s) | 480 |
| HaeIII | GGCC | 3 cut(s) | 81, 152, 305 |
| HgaI | GACGC | 1 cut(s) | 206 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| HincII | GTYRAC | 1 cut(s) | 316 |
| HindII | GTYRAC | 1 cut(s) | 316 |
| HpaI | GTTAAC | 1 cut(s) | 316 |
| HphI | GGTGA | 1 cut(s) | 493 |
| Hpy166II | GTNNAC | 2 cut(s) | 228, 316 |
| Hpy188III | TCNNGA | 5 cut(s) | 221, 266, 352, 404, 601 |
| Hpy8I | GTNNAC | 2 cut(s) | 228, 316 |
| HpyAV | CCTTC | 2 cut(s) | 410, 513 |
| HpyCH4III | ACNGT | 2 cut(s) | 374, 475 |
| HpyCH4IV | ACGT | 1 cut(s) | 88 |
| HpyCH4V | TGCA | 4 cut(s) | 125, 419, 514, 545 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 451, 460 |
| HpyF3I | CTNAG | 2 cut(s) | 222, 441 |
| HpySE526I | ACGT | 1 cut(s) | 88 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| KspAI | GTTAAC | 1 cut(s) | 316 |
| Kzo9I | GATC | 1 cut(s) | 574 |
| LmnI | GCTCC | 2 cut(s) | 439, 499 |
| Lsp1109I | GCAGC | 3 cut(s) | 226, 349, 403 |
| MaeII | ACGT | 1 cut(s) | 88 |
| MaeIII | GTNAC | 2 cut(s) | 20, 481 |
| MalI | GATC | 1 cut(s) | 576 |
| MboI | GATC | 1 cut(s) | 574 |
| MboII | GAAGA | 5 cut(s) | 182, 194, 367, 591, 601 |
| MluCI | AATT | 5 cut(s) | 101, 107, 233, 323, 341 |
| MnlI | CCTC | 6 cut(s) | 169, 258, 432, 450, 465, 579 |
| MseI | TTAA | 1 cut(s) | 315 |
| MspR9I | CCNGG | 1 cut(s) | 531 |
| MvaI | CCWGG | 1 cut(s) | 531 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 451, 460 |
| NdeII | GATC | 1 cut(s) | 574 |
| NlaIV | GGNNCC | 1 cut(s) | 69 |
| NmuCI | GTSAC | 2 cut(s) | 20, 481 |
| PasI | CCCWGGG | 1 cut(s) | 530 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 30 |
| PkrI | GCNGC | 3 cut(s) | 216, 339, 418 |
| PpuMI | RGGWCCY | 1 cut(s) | 67 |
| PsiI | TTATAA | 1 cut(s) | 239 |
| Psp1406I | AACGTT | 1 cut(s) | 88 |
| Psp5II | RGGWCCY | 1 cut(s) | 67 |
| Psp6I | CCWGG | 1 cut(s) | 529 |
| PspGI | CCWGG | 1 cut(s) | 529 |
| PspN4I | GGNNCC | 1 cut(s) | 69 |
| PspPI | GGNCC | 3 cut(s) | 67, 151, 304 |
| PspPPI | RGGWCCY | 1 cut(s) | 67 |
| RsaI | GTAC | 1 cut(s) | 191 |
| RsaNI | GTAC | 1 cut(s) | 190 |
| SaqAI | TTAA | 1 cut(s) | 315 |
| SatI | GCNGC | 3 cut(s) | 215, 338, 417 |
| Sau3AI | GATC | 1 cut(s) | 574 |
| Sau96I | GGNCC | 3 cut(s) | 67, 151, 304 |
| ScrFI | CCNGG | 1 cut(s) | 531 |
| SetI | ASST | 7 cut(s) | 91, 137, 412, 424, 442, 451, 469 |
| SfcI | CTRYAG | 1 cut(s) | 361 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SmlI | CTYRAG | 1 cut(s) | 266 |
| SmoI | CTYRAG | 1 cut(s) | 266 |
| Sse9I | AATT | 5 cut(s) | 101, 107, 233, 323, 341 |
| SspI | AATATT | 1 cut(s) | 209 |
| StyD4I | CCNGG | 1 cut(s) | 529 |
| TaaI | ACNGT | 2 cut(s) | 374, 475 |
| TaiI | ACGT | 1 cut(s) | 91 |
| TaqI | TCGA | 1 cut(s) | 577 |
| TasI | AATT | 5 cut(s) | 101, 107, 233, 323, 341 |
| Tru1I | TTAA | 1 cut(s) | 315 |
| Tru9I | TTAA | 1 cut(s) | 315 |
| TseFI | GTSAC | 2 cut(s) | 20, 481 |
| TseI | GCWGC | 3 cut(s) | 214, 337, 416 |
| Tsp45I | GTSAC | 2 cut(s) | 20, 481 |
| TspDTI | ATGAA | 1 cut(s) | 172 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XapI | RAATTY | 2 cut(s) | 107, 233 |
| XmiI | GTMKAC | 1 cut(s) | 227 |