Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003842

Physical Location & Seq

Genomic Coordinates Forward (+)

20012839 .. 20017191

Gene Structure 4353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g26530.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGATTGGCACTGGGTTTTTGGGCACAGCAGATTTGCTTCCGTCAAGTCCGATCACTCATTTGACACTCAAGTCAGTAAAAGGCATTTGGAGACCTTTCATTGGGCAAGCTACCATCTTGAGTGAAGAGACCCGACCCGGCCCATTTACATCTGTAGAACGGGTCAAACCTTTTCCGCTTAAATCGTTAAATCAGGAAGAGAGCAATATTATACATACGACAGTCGAGGAAGTAGTAGAAGAAGAAGAAAGGGTTCTAATGGCGTCTGGCACAGAGAGTGATGAAGCTTCTGACACCCAAGAAATTTACAAAGACCCAGATGATGGGAGGCAGCGTTTCTTGCTCGAATTGGAGTTCATCCAATGTCTCGCAAATCCCACTTATATCCACTATTTGGCTCAAAATCGGTACTTTGAAGATGAAGCGTTTATTGGGTACTTGAAATATCTTCAGTATTGGCAGCGTCCTGAGTACACCAAGTTCATAATGTACCCTCATTGCTTGTTTTTCCTTGAGCAACTCCAAAATGCAAACTTTCGCAATGCAATGGCACATCCTGCCAACAAGGAATTGGCGCATAGGCAGCAATTCTACTTCTGGAAGAACTATAGGCACAACCGTTTGAAACACATATTACCGAGACCTCTTCCTGAACCTGAAGCTGCACCCCCCCCTTCTGCCCCGCCTCTACAATCTCTGCTTCCTGCTCCACCTGTGCCAGCTGCAACCATTCCTGCTACAGCAACTGCTCCTGCTCCTGCCCTCCCTCCTATGCAGTATGCTAATGCCCCTGGATCTGCGCTTGCAAAGAACGATGCAAGGAATAGTGCAGTTGATCGAAGAAAGAGAAAGAAAGAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:0140110 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med31

Protein Analysis

288

Amino Acids

32.6

Weight (kDa)

6.46

Isoelectric Point (pI)

64.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med31	PF05669	111 - 203	2.1e-34	SOH1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19910 AT5G19910
fragaria_vesca	FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530
malus_domestica	MD01G1174300.v1.1 MD07G1241000.v1.1
prunus_persica	Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1
pyrus_communis	pycom01g18600 pycom07g21720
rosa_chinensis	RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201
rosa_laevigata	RLG00000026844
rosa_multiflora	Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013
rosa_rugosa	Rorug01G0376700 Rorug01G0376700 Rorug01G0376700
rosa_samantha	Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100
rosa_wichuraiana	Rw1G033970 Rw1G033980 Rw7G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	70
AccB7I	CCANNNNNTGG	2 cut(s)	323, 394
AciI	CCGC	2 cut(s)	176, 683
AclWI	GGATC	1 cut(s)	802
AcsI	RAATTY	1 cut(s)	303
AcuI	CTGAAG	2 cut(s)	434, 678
AcyI	GRCGYC	1 cut(s)	263
AfaI	GTAC	4 cut(s)	410, 437, 473, 491
AfiI	CCNNNNNNNGG	3 cut(s)	101, 323, 394
AgsI	TTSAA	3 cut(s)	416, 442, 625
AjnI	CCWGG	1 cut(s)	790
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AluBI	AGCT	4 cut(s)	110, 287, 662, 722
AluI	AGCT	4 cut(s)	110, 287, 662, 722
Alw26I	GTCTC	4 cut(s)	85, 122, 371, 634
AlwI	GGATC	1 cut(s)	802
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	5 cut(s)	331, 460, 583, 662, 722
ApoI	RAATTY	1 cut(s)	303
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	2 cut(s)	577, 802
AspS9I	GGNCC	1 cut(s)	140
AsuC2I	CCSGG	1 cut(s)	138
BaeGI	GKGCMC	1 cut(s)	26
BbvI	GCAGC	5 cut(s)	343, 472, 595, 649, 709
BccI	CCATC	2 cut(s)	122, 317
BciT130I	CCWGG	1 cut(s)	792
BcnI	CCSGG	1 cut(s)	138
BcoDI	GTCTC	4 cut(s)	85, 122, 371, 634
BfmI	CTRYAG	3 cut(s)	153, 607, 738
BisI	GCNGC	5 cut(s)	332, 461, 584, 663, 723
BlsI	GCNGC	5 cut(s)	333, 462, 585, 664, 724
Bme1390I	CCNGG	2 cut(s)	138, 792
BmgT120I	GGNCC	1 cut(s)	140
BmrFI	CCNGG	2 cut(s)	138, 792
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	805
BmuI	ACTGGG	1 cut(s)	21
BpuEI	CTTGAG	3 cut(s)	53, 139, 533
BpuMI	CCSGG	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	263
BsaI	GGTCTC	3 cut(s)	85, 122, 634
BsaJI	CCNNGG	1 cut(s)	790
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 323, 394
Bse1I	ACTGG	1 cut(s)	16
Bse3DI	GCAATG	3 cut(s)	496, 547, 552
BseBI	CCWGG	1 cut(s)	792
BseDI	CCNNGG	1 cut(s)	790
BseGI	GGATG	2 cut(s)	357, 553
BseLI	CCNNNNNNNGG	3 cut(s)	101, 323, 394
BseMI	GCAATG	3 cut(s)	496, 547, 552
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	5 cut(s)	343, 472, 595, 649, 709
BsgI	GTGCAG	2 cut(s)	648, 849
BshFI	GGCC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	3 cut(s)	101, 323, 394
BsmAI	GTCTC	4 cut(s)	85, 122, 371, 634
BsnI	GGCC	1 cut(s)	141
Bso31I	GGTCTC	3 cut(s)	85, 122, 634
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	51, 794, 835
BspACI	CCGC	2 cut(s)	176, 683
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	1 cut(s)	460
BspPI	GGATC	1 cut(s)	802
BspTNI	GGTCTC	3 cut(s)	85, 122, 634
BsrDI	GCAATG	3 cut(s)	496, 547, 552
BsrI	ACTGG	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	790
BssMI	GATC	3 cut(s)	51, 794, 835
BssNI	GRCGYC	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	792
Bst4CI	ACNGT	2 cut(s)	223, 620
Bst6I	CTCTTC	3 cut(s)	120, 192, 651
BstACI	GRCGYC	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	3 cut(s)	108, 720, 804
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	2 cut(s)	357, 553
BstHHI	GCGC	2 cut(s)	577, 802
BstKTI	GATC	3 cut(s)	54, 797, 838
BstMAI	GTCTC	4 cut(s)	85, 122, 371, 634
BstMBI	GATC	3 cut(s)	51, 794, 835
BstMWI	GCNNNNNNNGC	3 cut(s)	340, 557, 583
BstNI	CCWGG	1 cut(s)	792
BstSCI	CCNGG	2 cut(s)	136, 790
BstSFI	CTRYAG	3 cut(s)	153, 607, 738
BstSLI	GKGCMC	1 cut(s)	26
BstV1I	GCAGC	5 cut(s)	343, 472, 595, 649, 709
BstX2I	RGATCY	1 cut(s)	794
BstYI	RGATCY	1 cut(s)	794
BsuRI	GGCC	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	357, 553
BtsIMutI	CAGTG	1 cut(s)	9
Cac8I	GCNNGC	3 cut(s)	108, 720, 804
CaiI	CAGNNNCTG	1 cut(s)	746
CfoI	GCGC	2 cut(s)	577, 802
Cfr13I	GGNCC	1 cut(s)	140
CseI	GACGC	2 cut(s)	252, 452
Csp6I	GTAC	4 cut(s)	409, 436, 472, 490
CviJI	RGCY	7 cut(s)	110, 141, 287, 398, 662, 722, 861
CviKI_1	RGCY	7 cut(s)	110, 141, 287, 398, 662, 722, 861
CviQI	GTAC	4 cut(s)	409, 436, 472, 490
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	3 cut(s)	53, 796, 837
DpnII	GATC	3 cut(s)	51, 794, 835
DrdI	GACNNNNNNGTC	1 cut(s)	70
DseDI	GACNNNNNNGTC	1 cut(s)	70
Eam1104I	CTCTTC	3 cut(s)	120, 192, 651
EarI	CTCTTC	3 cut(s)	120, 192, 651
Eco31I	GGTCTC	3 cut(s)	85, 122, 634
Eco57I	CTGAAG	2 cut(s)	434, 678
EcoRII	CCWGG	1 cut(s)	790
FaiI	YATR	9 cut(s)	212, 216, 384, 485, 579, 609, 632, 773, 780
FauI	CCCGC	1 cut(s)	690
Fnu4HI	GCNGC	5 cut(s)	332, 461, 584, 663, 723
FokI	GGATG	2 cut(s)	344, 540
Fsp4HI	GCNGC	5 cut(s)	332, 461, 584, 663, 723
GlaI	GCGC	2 cut(s)	576, 801
GluI	GCNGC	5 cut(s)	332, 461, 584, 663, 723
HaeIII	GGCC	1 cut(s)	141
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	2 cut(s)	252, 452
HhaI	GCGC	2 cut(s)	577, 802
Hin1I	GRCGYC	1 cut(s)	263
Hin6I	GCGC	2 cut(s)	575, 800
HinP1I	GCGC	2 cut(s)	575, 800
HindIII	AAGCTT	1 cut(s)	285
HpaII	CCGG	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	474
Hpy188I	TCNGA	2 cut(s)	51, 292
Hpy188III	TCNNGA	5 cut(s)	118, 194, 467, 598, 650
Hpy8I	GTNNAC	1 cut(s)	474
HpyAV	CCTTC	2 cut(s)	684, 851
HpyCH4III	ACNGT	2 cut(s)	223, 620
HpyCH4V	TGCA	8 cut(s)	530, 545, 665, 725, 775, 806, 818, 830
HpyF10VI	GCNNNNNNNGC	3 cut(s)	340, 557, 583
HpyF3I	CTNAG	1 cut(s)	468
Hsp92I	GRCGYC	1 cut(s)	263
HspAI	GCGC	2 cut(s)	575, 800
Kzo9I	GATC	3 cut(s)	51, 794, 835
LmnI	GCTCC	3 cut(s)	712, 754, 760
Lsp1109I	GCAGC	5 cut(s)	343, 472, 595, 649, 709
LweI	GCATC	1 cut(s)	805
MalI	GATC	3 cut(s)	53, 796, 837
MboI	GATC	3 cut(s)	51, 794, 835
MflI	RGATCY	1 cut(s)	794
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	4 cut(s)	303, 347, 569, 587
MnlI	CCTC	7 cut(s)	220, 321, 504, 654, 696, 773, 777
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	180, 188
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	2 cut(s)	138, 792
MvaI	CCWGG	1 cut(s)	792
MwoI	GCNNNNNNNGC	3 cut(s)	340, 557, 583
NciI	CCSGG	1 cut(s)	138
NdeII	GATC	3 cut(s)	51, 794, 835
PdmI	GAANNNNTTC	1 cut(s)	252
PflMI	CCANNNNNTGG	2 cut(s)	323, 394
PkrI	GCNGC	5 cut(s)	333, 462, 585, 664, 724
Psp6I	CCWGG	1 cut(s)	790
PspGI	CCWGG	1 cut(s)	790
PspPI	GGNCC	1 cut(s)	140
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	794
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	4 cut(s)	410, 437, 473, 491
RsaNI	GTAC	4 cut(s)	409, 436, 472, 490
SaqAI	TTAA	2 cut(s)	180, 188
SatI	GCNGC	5 cut(s)	332, 461, 584, 663, 723
Sau3AI	GATC	3 cut(s)	51, 794, 835
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	2 cut(s)	138, 792
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	9 cut(s)	97, 112, 172, 289, 646, 658, 664, 715, 724
SfaNI	GCATC	1 cut(s)	805
SfcI	CTRYAG	3 cut(s)	153, 607, 738
SmlI	CTYRAG	3 cut(s)	68, 118, 512
SmoI	CTYRAG	3 cut(s)	68, 118, 512
Sse9I	AATT	4 cut(s)	303, 347, 569, 587
SsiI	CCGC	2 cut(s)	176, 683
SspI	AATATT	1 cut(s)	208
StyD4I	CCNGG	2 cut(s)	136, 790
TaaI	ACNGT	2 cut(s)	223, 620
TaqI	TCGA	3 cut(s)	225, 345, 838
TasI	AATT	4 cut(s)	303, 347, 569, 587
TatI	WGTACW	1 cut(s)	471
Tru1I	TTAA	2 cut(s)	180, 188
Tru9I	TTAA	2 cut(s)	180, 188
TscAI	CASTG	1 cut(s)	16
TseI	GCWGC	5 cut(s)	331, 460, 583, 662, 722
TspDTI	ATGAA	5 cut(s)	88, 297, 346, 435, 472
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	16
Van91I	CCANNNNNTGG	2 cut(s)	323, 394
XapI	RAATTY	1 cut(s)	303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XmnI	GAANNNNTTC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.