Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003842

Physical Location & Seq

Genomic Coordinates Reverse (-)

43478848 .. 43479072

Gene Structure 225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G030640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCGTCTGGCACAGAGAGTGATGAAGCCTCTGACACTCCAGAAATTTACAAAGACCCAGATGATGGGAGGCAGCGATTCTTGCTTGAATTGGAGTTCATCCAATGTCTCGCAAATCCCACTTACATTCACTATTTGGCTCAAAATCGGTACTTTGAAGATGAAGCCTTCATTGGGTACTTGAAATATCTTCAGTTGGTGTACTCACGACGCTGCCAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:0140110 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med31

Protein Analysis

74

Amino Acids

8.81

Weight (kDa)

4.49

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med31	PF05669	25 - 66	1.1e-16	SOH1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19910 AT5G19910
fragaria_vesca	FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530
malus_domestica	MD01G1174300.v1.1 MD07G1241000.v1.1
prunus_persica	Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1
pyrus_communis	pycom01g18600 pycom07g21720
rosa_chinensis	RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201
rosa_laevigata	RLG00000026844
rosa_multiflora	Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013
rosa_rugosa	Rorug01G0376700 Rorug01G0376700 Rorug01G0376700
rosa_samantha	Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100
rosa_wichuraiana	Rw1G033970 Rw1G033980 Rw7G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	45
AcuI	CTGAAG	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	152, 179, 203
AfiI	CCNNNNNNNGG	2 cut(s)	65, 174
AgsI	TTSAA	3 cut(s)	89, 158, 184
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
Alw26I	GTCTC	1 cut(s)	113
ApeKI	GCWGC	2 cut(s)	73, 213
ApoI	RAATTY	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	85, 200
BccI	CCATC	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	113
BisI	GCNGC	2 cut(s)	74, 214
BlsI	GCNGC	2 cut(s)	75, 215
BpmI	CTGGAG	1 cut(s)	24
BsaHI	GRCGYC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 174
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	65, 174
BseXI	GCAGC	2 cut(s)	85, 200
BslI	CCNNNNNNNGG	2 cut(s)	65, 174
BsmAI	GTCTC	1 cut(s)	113
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	113
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	85, 200
BtsCI	GGATG	1 cut(s)	99
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	3 cut(s)	151, 178, 202
CviJI	RGCY	3 cut(s)	29, 140, 167
CviKI_1	RGCY	3 cut(s)	29, 140, 167
CviQI	GTAC	3 cut(s)	151, 178, 202
Eco57I	CTGAAG	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	74, 214
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	74, 214
GluI	GCNGC	2 cut(s)	74, 214
GsuI	CTGGAG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	78
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	2 cut(s)	41, 207
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	178
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
Hsp92I	GRCGYC	1 cut(s)	5
LpnPI	CCDG	2 cut(s)	54, 72
Lsp1109I	GCAGC	2 cut(s)	85, 200
MboII	GAAGA	2 cut(s)	170, 182
MluCI	AATT	2 cut(s)	45, 89
MnlI	CCTC	2 cut(s)	40, 63
MwoI	GCNNNNNNNGC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	75, 215
RsaI	GTAC	3 cut(s)	152, 179, 203
RsaNI	GTAC	3 cut(s)	151, 178, 202
SatI	GCNGC	2 cut(s)	74, 214
SgeI	CNNG	8 cut(s)	21, 53, 71, 94, 98, 122, 193, 219
Sse9I	AATT	2 cut(s)	45, 89
TasI	AATT	2 cut(s)	45, 89
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	78
TseI	GCWGC	2 cut(s)	73, 213
TspDTI	ATGAA	4 cut(s)	39, 88, 160, 177
Van91I	CCANNNNNTGG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.