Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003842

Physical Location & Seq

Genomic Coordinates Forward (+)

61903836 .. 61907557

Gene Structure 3722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G033980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCAAAGGCCCGACCCGGCCCATTTATACCAAGTAAAACTGGTCAAAGGTTCCCTTAAATCGTTAAATCAGGTAAGAGACTGGTCACAGCAATATATTTCAGTTCAGAGAAGAAGAAGAAGAAGGGTTCTAATGGCGTCTGGCACAGAGAGTGATGAAGCCTCTGACACTCCAGAAATTTACAAAGACCCAGATGATGGGAGGCAGCGATTCTTGCTTGAATTGGAGTTCATCCAATGTCTCGCAAATCCCACTTACATTCACTATTTGGCTCAAAATCGGTACTTTGAAGATGAAGCCTTCATTGGGTACTTGAAATATCTTCAGTATTGGCAGCGTCCTGAGTACACCAAATTCATAATGTACCCTCATTGCTTGTTTTTTCTTGAGCAACTCCAAAATGCAAACTTTCGCAATGCAATGGCACATCCTGCCAACAAGGAATTGGCGCATAGGCAGCAATTCTACTTCTGGAAGAACTATAGGCACAACCGTTTGAAACACATATTACCTAGACCTCTTCCTGAACCTGAAGCTGCACCCCCCGCCTCTGCTCCGCCTCAGCAACCTGTGCCTGCTCTTCCACCTGTGCCAGCTGCAACCATTTCTGCTACAGTTACTGCTCCTGCCCTTCCCCCTATGCAGTATGCTAATGCCCCTGGATCTGCTCTTGCAAAGAATGATGCAAGGAATAGTGCGGTTGATCGAAGAAAGAGAAAGAAAGAAGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:0140110 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med31

Protein Analysis

243

Amino Acids

28.25

Weight (kDa)

9.65

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med31	PF05669	69 - 161	1.5e-34	SOH1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19910 AT5G19910
fragaria_vesca	FvH4_5g39330 FvH4_7g26522 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530 FvH4_7g26530
malus_domestica	MD01G1174300.v1.1 MD07G1241000.v1.1
prunus_persica	Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1 Prupe.2G269700_v2.0.a1
pyrus_communis	pycom01g18600 pycom07g21720
rosa_chinensis	RchiOBHm_Chr1g0373191 RchiOBHm_Chr1g0373201
rosa_laevigata	RLG00000026844
rosa_multiflora	Rmu_co8377585.1_g000001 Rmu_sc0000170.1_g000012 Rmu_sc0000170.1_g000013
rosa_rugosa	Rorug01G0376700 Rorug01G0376700 Rorug01G0376700
rosa_samantha	Rh1AG385200 Rh1BG349100 Rh1BG349200 Rh1CG362500 Rh1DG380000 Rh1DG380100
rosa_wichuraiana	Rw1G033970 Rw1G033980 Rw7G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AciI	CCGC	3 cut(s)	546, 557, 698
AclWI	GGATC	1 cut(s)	670
AcsI	RAATTY	2 cut(s)	177, 353
AcuI	CTGAAG	2 cut(s)	308, 552
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	4 cut(s)	284, 311, 347, 365
AfiI	CCNNNNNNNGG	2 cut(s)	197, 306
AgsI	TTSAA	4 cut(s)	221, 290, 316, 499
AjnI	CCWGG	1 cut(s)	658
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	2 cut(s)	536, 596
AluI	AGCT	2 cut(s)	536, 596
Alw26I	GTCTC	2 cut(s)	72, 245
AlwI	GGATC	1 cut(s)	670
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	2 cut(s)	8, 18
ApeKI	GCWGC	5 cut(s)	205, 334, 457, 536, 596
ApoI	RAATTY	2 cut(s)	177, 353
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	2 cut(s)	9, 19
AsuC2I	CCSGG	1 cut(s)	17
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	5 cut(s)	217, 346, 469, 523, 583
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	1 cut(s)	660
BcnI	CCSGG	1 cut(s)	17
BcoDI	GTCTC	2 cut(s)	72, 245
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	2 cut(s)	481, 612
BisI	GCNGC	5 cut(s)	206, 335, 458, 537, 597
BlsI	GCNGC	5 cut(s)	207, 336, 459, 538, 598
Bme1390I	CCNGG	2 cut(s)	17, 660
BmgT120I	GGNCC	2 cut(s)	9, 19
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	2 cut(s)	17, 660
BmsI	GCATC	1 cut(s)	673
BpmI	CTGGAG	1 cut(s)	156
Bpu10I	CCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 306
Bse1I	ACTGG	2 cut(s)	45, 86
Bse3DI	GCAATG	3 cut(s)	370, 421, 426
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	2 cut(s)	231, 427
BseLI	CCNNNNNNNGG	2 cut(s)	197, 306
BseMI	GCAATG	3 cut(s)	370, 421, 426
BseMII	CTCAG	2 cut(s)	333, 575
BseNI	ACTGG	2 cut(s)	45, 86
BseXI	GCAGC	5 cut(s)	217, 346, 469, 523, 583
BsgI	GTGCAG	1 cut(s)	522
BshFI	GGCC	2 cut(s)	10, 20
BsiSI	CCGG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	197, 306
BsmAI	GTCTC	2 cut(s)	72, 245
BsnI	GGCC	2 cut(s)	10, 20
Bsp143I	GATC	2 cut(s)	662, 703
BspACI	CCGC	3 cut(s)	546, 557, 698
BspANI	GGCC	2 cut(s)	10, 20
BspCNI	CTCAG	2 cut(s)	334, 574
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	1 cut(s)	670
BspQI	GCTCTTC	1 cut(s)	585
BsrDI	GCAATG	3 cut(s)	370, 421, 426
BsrI	ACTGG	2 cut(s)	45, 86
BssECI	CCNNGG	1 cut(s)	658
BssMI	GATC	2 cut(s)	662, 703
BssNI	GRCGYC	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	2 cut(s)	494, 616
Bst6I	CTCTTC	2 cut(s)	525, 585
BstACI	GRCGYC	1 cut(s)	137
BstAPI	GCANNNNNTGC	2 cut(s)	431, 571
BstC8I	GCNNGC	2 cut(s)	576, 594
BstDEI	CTNAG	2 cut(s)	342, 561
BstF5I	GGATG	2 cut(s)	231, 427
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	2 cut(s)	665, 706
BstMAI	GTCTC	2 cut(s)	72, 245
BstMBI	GATC	2 cut(s)	662, 703
BstMWI	GCNNNNNNNGC	5 cut(s)	214, 431, 457, 545, 571
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	15, 658
BstSFI	CTRYAG	2 cut(s)	481, 612
BstV1I	GCAGC	5 cut(s)	217, 346, 469, 523, 583
BstX2I	RGATCY	1 cut(s)	662
BstYI	RGATCY	1 cut(s)	662
BsuRI	GGCC	2 cut(s)	10, 20
BtsCI	GGATG	2 cut(s)	231, 427
Cac8I	GCNNGC	2 cut(s)	576, 594
CaiI	CAGNNNCTG	1 cut(s)	620
CfoI	GCGC	1 cut(s)	451
Cfr13I	GGNCC	2 cut(s)	9, 19
CseI	GACGC	2 cut(s)	126, 326
Csp6I	GTAC	4 cut(s)	283, 310, 346, 364
CviJI	RGCY	8 cut(s)	10, 20, 161, 272, 299, 536, 596, 729
CviKI_1	RGCY	8 cut(s)	10, 20, 161, 272, 299, 536, 596, 729
CviQI	GTAC	4 cut(s)	283, 310, 346, 364
DdeI	CTNAG	2 cut(s)	342, 561
DpnI	GATC	2 cut(s)	664, 705
DpnII	GATC	2 cut(s)	662, 703
Eam1104I	CTCTTC	2 cut(s)	525, 585
EarI	CTCTTC	2 cut(s)	525, 585
EciI	GGCGGA	1 cut(s)	546
Eco57I	CTGAAG	2 cut(s)	308, 552
EcoRII	CCWGG	1 cut(s)	658
FaiI	YATR	8 cut(s)	28, 96, 359, 453, 483, 506, 641, 648
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FauI	CCCGC	1 cut(s)	553
Fnu4HI	GCNGC	5 cut(s)	206, 335, 458, 537, 597
FokI	GGATG	2 cut(s)	218, 414
Fsp4HI	GCNGC	5 cut(s)	206, 335, 458, 537, 597
FspBI	CTAG	1 cut(s)	513
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	5 cut(s)	206, 335, 458, 537, 597
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	10, 20
HapII	CCGG	1 cut(s)	17
HgaI	GACGC	2 cut(s)	126, 326
HhaI	GCGC	1 cut(s)	451
Hin1I	GRCGYC	1 cut(s)	137
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HinfI	GANTC	1 cut(s)	210
HpaII	CCGG	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	2 cut(s)	108, 166
Hpy188III	TCNNGA	5 cut(s)	173, 341, 386, 472, 524
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	4 cut(s)	117, 310, 641, 719
HpyCH4III	ACNGT	2 cut(s)	494, 616
HpyCH4V	TGCA	8 cut(s)	4, 404, 419, 539, 599, 643, 674, 686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	214, 431, 457, 545, 571
HpyF3I	CTNAG	2 cut(s)	342, 561
Hsp92I	GRCGYC	1 cut(s)	137
HspAI	GCGC	1 cut(s)	449
Kzo9I	GATC	2 cut(s)	662, 703
LguI	GCTCTTC	1 cut(s)	585
LmnI	GCTCC	2 cut(s)	559, 628
Lsp1109I	GCAGC	5 cut(s)	217, 346, 469, 523, 583
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	2 cut(s)	84, 616
MalI	GATC	2 cut(s)	664, 705
MboI	GATC	2 cut(s)	662, 703
MflI	RGATCY	1 cut(s)	662
MluCI	AATT	5 cut(s)	177, 221, 353, 443, 461
MnlI	CCTC	6 cut(s)	172, 195, 378, 528, 559, 570
MseI	TTAA	2 cut(s)	57, 65
MspA1I	CMGCKG	1 cut(s)	596
MspI	CCGG	1 cut(s)	17
MspR9I	CCNGG	2 cut(s)	17, 660
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	5 cut(s)	214, 431, 457, 545, 571
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	2 cut(s)	662, 703
NlaIV	GGNNCC	1 cut(s)	52
NmuCI	GTSAC	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	585
PfeI	GAWTC	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	207, 336, 459, 538, 598
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	2 cut(s)	9, 19
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	662
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	4 cut(s)	284, 311, 347, 365
RsaNI	GTAC	4 cut(s)	283, 310, 346, 364
SapI	GCTCTTC	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	57, 65
SatI	GCNGC	5 cut(s)	206, 335, 458, 537, 597
Sau3AI	GATC	2 cut(s)	662, 703
Sau96I	GGNCC	2 cut(s)	9, 19
ScrFI	CCNGG	2 cut(s)	17, 660
SetI	ASST	9 cut(s)	52, 75, 514, 520, 532, 538, 571, 589, 598
SfaNI	GCATC	1 cut(s)	673
SfcI	CTRYAG	2 cut(s)	481, 612
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
Sse9I	AATT	5 cut(s)	177, 221, 353, 443, 461
SsiI	CCGC	3 cut(s)	546, 557, 698
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	2 cut(s)	15, 658
TaaI	ACNGT	2 cut(s)	494, 616
TaqI	TCGA	1 cut(s)	706
TasI	AATT	5 cut(s)	177, 221, 353, 443, 461
TatI	WGTACW	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	2 cut(s)	57, 65
Tru9I	TTAA	2 cut(s)	57, 65
TseFI	GTSAC	1 cut(s)	84
TseI	GCWGC	5 cut(s)	205, 334, 457, 536, 596
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	5 cut(s)	171, 220, 292, 309, 346
Van91I	CCANNNNNTGG	1 cut(s)	197
XapI	RAATTY	2 cut(s)	177, 353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.